BAC Information

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BAC

Clone NameB6Ng01-272B23
Chromosome14 (Build37)
Map Location 24,351,213 - 24,352,369
singlet/doubletsinglet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272B23.bB6Ng01-272B23.g
ACCGA074027GA074028
length1,1511,144
definitionB6Ng01-272B23.b B6Ng01-272B23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcccctggaaatagagagcagcacatgcctctcctctctctgcc
ataggctacctgctctccctactacttgcttctcttcaatatcagatcac
gtcttagggggctcgaaagggagagacaggggaatgggctgctctgcttt
gattttccattgagaaatttgcctggagcaaggtttagtggtaacatagc
tgatgagacagggtaagcctcaaacttctgttttttcagttggcaattcc
attctctgtcagagaacttcgcttgatatgaggtgaagcacagagtgact
cattgagatgtctggaaaaggcttgaaggtcaggagttagcacaagcagc
cttgtgcttgggagtgctagcttcataccacagcatccagagccctggag
ctaaccgtatcaggtcacaaagtgggcggatatggccaattcgtatgttc
tctgagaacattctagatgtgagccatttcaattgtgtctaggcaagtgg
cagagtgactgggtcccagagggagtgacagacttttggcatatctgcac
tcaggctgtcagcttccctccttaagattctgctcctctcttcatctctt
ttgggtttgttctctggaggtcttctcaaggattgtatctgagatggatt
agaactctcttccacaaagttcctgaaactctggcaggcttctctgttgg
ctgatgttgatgttggctgaattccactggattatttagtaaaggaagtc
cttggtggacaccttggtctcccatgtcagtagctgtggggagattggtc
gttaggaagtgatgatgggcaaactacagggtaagggaaaagaggatccc
tgaggcttcctatagtgtgttcccaagctacttagatgaggcctgccact
tgtagctgtgattcccaggcaagctatctacaccccctaatgctcggttt
cctcaatagtgagtgacagtggtgttctcacctaccacctgcattagcag
aaagagtgaggagggggagacgcaagcaaatacttagtacatcaaaaagc
cccagcagtcctcaagaccacaaatggttgggtgatcctggcagggacca
gatgcccaaggatgacgtctgcctgatttgctgcatatggttcaaccccg
a
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcttgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagcattatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtagacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggaccagatgtagctgtctcttgtgagactatgccgggccctagcaaaca
cagaagtggatgcccacaagtcagctaatggacggatcacaggctcccaa
tgagggagctagagaagtacccaggagctaaagggatctgcaacctaata
gttgattcatcattattgaacttactagtaccccgagctcttgaactctt
agcttgcatattgtatcacaggatgactaattcgctatcacttgcaaaga
agctcatggcaacaccaactgttatatgctccagagaacacggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24351213_24352369
seq2: B6Ng01-272B23.b_44_1194 (reverse)

seq1  TCGGGGTTGGAAACCATATGCCAGCAAAACA-GCAGACTGTCCATCC-TG  48
      |||||||||  ||||||||| ||||||| || |||||| || ||||| ||
seq2  TCGGGGTTG--AACCATATG-CAGCAAATCAGGCAGAC-GT-CATCCTTG  45

seq1  GGCATCTTGGTCCTCGCCAGGATCACCC-ACCATTTGTGGTCCCTGAGGA  97
      |||||| ||||||  ||||||||||||| |||||||||||| | ||||||
seq2  GGCATC-TGGTCCCTGCCAGGATCACCCAACCATTTGTGGT-CTTGAGGA  93

seq1  CTGCTGGGGCTTTTTGATGTACTAAGTATTTGCTTGCGTCCTCCCCCTCT  147
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CTGCTGGGGCTTTTTGATGTACTAAGTATTTGCTTGCGT-CTCCCCCTCC  142

seq1  TCACTCTTTCTGCTAATGCAGGTGGTAGGTGAGAACACCACTGTCACTCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTCTGCTAATGCAGGTGGTAGGTGAGAACACCACTGTCACTCA  192

seq1  CTATTGAGGAAACCGAGCATTAGGGGGTGTAGATAGCTTGCCTGGGAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGGAAACCGAGCATTAGGGGGTGTAGATAGCTTGCCTGGGAATC  242

seq1  ACAGCTACAAGTGGCAGGCCTCATCTAAGTAGCTTGGGAACACACTATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAAGTGGCAGGCCTCATCTAAGTAGCTTGGGAACACACTATAG  292

seq1  GAAGCCTCAGGGATCCTCTTTTCCCTTACCCTGTAGTTTGCCCATCATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCAGGGATCCTCTTTTCCCTTACCCTGTAGTTTGCCCATCATCA  342

seq1  CTTCCTAACGACCAATCTCCCCACAGCTACTGACATGGGAGACCAAGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAACGACCAATCTCCCCACAGCTACTGACATGGGAGACCAAGGTG  392

seq1  TCCACCAAGGACTTCCTTTACTAAATAATCCAGTGGAATTCAGCCAACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAGGACTTCCTTTACTAAATAATCCAGTGGAATTCAGCCAACAT  442

seq1  CAACATCAGCCAACAGAGAAGCCTGCCAGAGTTTTCAGGAACTTTGTGGA  497
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAACATCAGCCAACAGAGAAGCCTGCCAGAG-TTTCAGGAACTTTGTGGA  491

seq1  AGAGAGTTCTAATCCATCTCAGATACAATCCTTGAGAAGACCTCCAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTCTAATCCATCTCAGATACAATCCTTGAGAAGACCTCCAGAGA  541

seq1  ACAAACCCAAAAGAGATGAAGAGAGGAGCAGAATCTTAAGGAGGGAAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAAAAGAGATGAAGAGAGGAGCAGAATCTTAAGGAGGGAAGCT  591

seq1  GACAGCCTGAGTGCAGATATGCCAAAAGTCTGTCACTCCCTCTGGGACCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTGAGTGCAGATATGCCAAAAGTCTGTCACTCCCTCTGGGACCC  641

seq1  AGTCACTCTGCCACTTGCCTAGACACAATTGAAATGGCTCACATCTAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCTGCCACTTGCCTAGACACAATTGAAATGGCTCACATCTAGAA  691

seq1  TGTTCTCAGAGAACATACGAATTGGCCATATCCGCCCACTTTGTGACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGAGAACATACGAATTGGCCATATCCGCCCACTTTGTGACCTG  741

seq1  ATACGGTTAGCTCCAGGGCTCTGGATGCTGTGGTATGAAGCTAGCACTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGTTAGCTCCAGGGCTCTGGATGCTGTGGTATGAAGCTAGCACTCC  791

seq1  CAAGCACAAGGCTGCTTGTGCTAACTCCTGACCTTCAAGCCTTTTCCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAAGGCTGCTTGTGCTAACTCCTGACCTTCAAGCCTTTTCCAGA  841

seq1  CATCTCAATGAGTCACTCTGTGCTTCACCTCATATCAAGCGAAGTTCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAATGAGTCACTCTGTGCTTCACCTCATATCAAGCGAAGTTCTCT  891

seq1  GACAGAGAATGGAATTGCCAACTGAAAAAACAGAAGTTTGAGGCTTACCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAATGGAATTGCCAACTGAAAAAACAGAAGTTTGAGGCTTACCC  941

seq1  TGTCTCATCAGCTATGTTACCACTAAACCTTGCTCCAGGCAAATTTCTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATCAGCTATGTTACCACTAAACCTTGCTCCAGGCAAATTTCTCA  991

seq1  ATGGAAAATCAAAGCAGAGCAGCCCATTCCCCTGTCTCTCCCTTTCGAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATCAAAGCAGAGCAGCCCATTCCCCTGTCTCTCCCTTTCGAGC  1041

seq1  CCCCTAAGACGTGATCTGATATTGAAGAGAAGCAAGTAGTAGGGAGAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAGACGTGATCTGATATTGAAGAGAAGCAAGTAGTAGGGAGAGCA  1091

seq1  GGTAGCCTATGGCAGAGAGAGGAGAGGCATGTGCTGCTCTCTATTTCCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCTATGGCAGAGAGAGGAGAGGCATGTGCTGCTCTCTATTTCCAG  1141

seq1  GGGAGAATTC  1157
      ||||||||||
seq2  GGGAGAATTC  1151