BAC Information

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BAC

Clone NameB6Ng01-273E04
Chromosome14 (Build37)
Map Location 117,664,333 - 117,826,161
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E04.bB6Ng01-273E04.g
ACCGA074879GA074880
length1,147449
definitionB6Ng01-273E04.b B6Ng01-273E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,824,999 - 117,826,161)(117,664,333 - 117,664,787)
sequence
gaattcttacaaattagatgttggtggaaaatataatcaataatttagat
tttcaaaaacataattaaacatttagcaatcatataatagtatgctaatt
tattattaaggatgtcaattaatgtacaactaatattgtaataatgcata
tttaatgcattattcaggtcaactaactctgccattttatattttcccaa
tttatctaatcgactagacttttccatgaagacatctttaacgataaatc
atcagtttacaaccataagtgttcattaaatttggtcaataccttgcacc
aaagtccctccatttattaccattaatgtaaagtcagcgaaaagatttaa
tggcagacaatttttcagaatctagtgtgcaatgcagagccatctgacaa
gggcagatttgtgataacaaagcaggaaattgttgactagaattcagact
tcaggaggtgaaaagttttctatactcagcgagcttcccacagtggagtg
ctcgtgtctaggcagcttgtttttcccagatacttctttaaagtaagcgc
ggctgattagggcttctgcattctctaggcgctacaggcaactcttaatt
cccacaatcatgaattaagtttgaaatttgctgacagttcctgccctaag
ccaacactgttctgagccatggcaagtgcttcgctgtccctccaggcact
gcaggaaatcagcagatggcttcacagtttctttgcatcgttatagtttt
gtagttttgttccacaaataccctttaggtcctgcccacaaggctgcttc
atttttctcttaaagaagaaattagtcacagctttagataaatcctaaag
tagaacaacttaaaaacattcctatttgttttgctcacagaaagaagtga
tgaactttccaaatgaaagtggtagttacagatggagtggttcattcatt
gatgagtgttcagggttcacaaacctaatttttccaagtcactgtccttt
gttcacgaacactctctggaggagaaagacttccacatcaaacctgcaag
gagtgagctgcacatgagtaaacttcgtgtcaagtcgccagtggatacga
cacaggacactgactgcttcatctgtctcctttgcctcattcagttt

cagatcaaatattgaatgtgaagctgttgtttctgtcttcttctcctggg
tcagaaccttcaacgcatcaagtaggtttttcatctaaaatcaaacaagt
ctatttgtgaataattagctcttgaatgatgagtgacagctagtagggaa
acttggaaccccctcccttccctttaatgagttagcaattttttcttaat
ttgataagaaatagcactattcagagcctaaagaacttgagcaatactgg
tgatattacttagtaaacaagtgacatgatcttataaagtgtattttatt
ttataaatataataatatatatccacatgaatgatttaataccactgaca
ggaaagataccttgcttaatagtccaataaagtttttttcaagatgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117824999_117826161
seq2: B6Ng01-273E04.b_44_1190 (reverse)

seq1  AAACTGAATGAAGGCAAAGGAGACAGATGAAGCAAGTTCAGTGTCCTGTG  50
      |||||||||| |||||||||||||||||||||||   |||||||||||||
seq2  AAACTGAATG-AGGCAAAGGAGACAGATGAAGCA--GTCAGTGTCCTGTG  47

seq1  TCCGTAATCCCACTGGGCCGACTTGAACACGAAGTTTACCTCCATGTTCC  100
      | ||||   |||||||  ||||||| |||||||||||||   ||||| | 
seq2  T-CGTA--TCCACTGG--CGACTTG-ACACGAAGTTTAC--TCATGTGC-  88

seq1  AAGCTCACT-CTTGCAGGTTTGATGGTGGAGTCTTTCTCCTCCAGAGAGT  149
       |||||||| |||||||||||||||  | |||||||||||||||||||||
seq2  -AGCTCACTCCTTGCAGGTTTGATGTGGAAGTCTTTCTCCTCCAGAGAGT  137

seq1  GTTCGGTGAACAAAGGACAGTGACCTTGGGAAAAATTAGGTTTGTGAACC  199
      |||| |||||||||||||||||||  | ||||||||||||||||||||||
seq2  GTTC-GTGAACAAAGGACAGTGAC--TTGGAAAAATTAGGTTTGTGAACC  184

seq1  CTGAACACTCATCAATGAATGAACCACTCCATCTGTAACTACCACTTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTCATCAATGAATGAACCACTCCATCTGTAACTACCACTTTCA  234

seq1  TTTGGAAAGTTCATCACTTCTTTCTGTTGAGCAAAACAAATAGGAATGTT  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGGAAAGTTCATCACTTCTTTCTG-TGAGCAAAACAAATAGGAATGTT  283

seq1  TTTAAGTTGTTCTACTTTAGGATTTATCTAAAGCTGTGACTAATTTCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTGTTCTACTTTAGGATTTATCTAAAGCTGTGACTAATTTCTTC  333

seq1  TTTAAGAGAAAAATGAAGCAGCCTTGTGGGCAGGACCTAAAGGGTATTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAAAAATGAAGCAGCCTTGTGGGCAGGACCTAAAGGGTATTTG  383

seq1  TGGAACAAAACTACAAAACTATAACGATGCAAAGAAACTGTGAAGCCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAAACTACAAAACTATAACGATGCAAAGAAACTGTGAAGCCATC  433

seq1  TGCTGATTTCCTGCAGTGCCTGGAGGGACAGCGAAGCACTTGCCATGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTTCCTGCAGTGCCTGGAGGGACAGCGAAGCACTTGCCATGGCT  483

seq1  CAGAACAGTGTTGGCTTAGGGCAGGAACTGTCAGCAAATTTCAAACTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGTGTTGGCTTAGGGCAGGAACTGTCAGCAAATTTCAAACTTAA  533

seq1  TTCATGATTGTGGGAATTAAGAGTTGCCTGTAGCGCCTAGAGAATGCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTGTGGGAATTAAGAGTTGCCTGTAGCGCCTAGAGAATGCAGA  583

seq1  AGCCCTAATCAGCCGCGCTTACTTTAAAGAAGTATCTGGGAAAAACAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAATCAGCCGCGCTTACTTTAAAGAAGTATCTGGGAAAAACAAGC  633

seq1  TGCCTAGACACGAGCACTCCACTGTGGGAAGCTCGCTGAGTATAGAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACACGAGCACTCCACTGTGGGAAGCTCGCTGAGTATAGAAAAC  683

seq1  TTTTCACCTCCTGAAGTCTGAATTCTAGTCAACAATTTCCTGCTTTGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTCCTGAAGTCTGAATTCTAGTCAACAATTTCCTGCTTTGTTA  733

seq1  TCACAAATCTGCCCTTGTCAGATGGCTCTGCATTGCACACTAGATTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATCTGCCCTTGTCAGATGGCTCTGCATTGCACACTAGATTCTGA  783

seq1  AAAATTGTCTGCCATTAAATCTTTTCGCTGACTTTACATTAATGGTAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTCTGCCATTAAATCTTTTCGCTGACTTTACATTAATGGTAATA  833

seq1  AATGGAGGGACTTTGGTGCAAGGTATTGACCAAATTTAATGAACACTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGGACTTTGGTGCAAGGTATTGACCAAATTTAATGAACACTTAT  883

seq1  GGTTGTAAACTGATGATTTATCGTTAAAGATGTCTTCATGGAAAAGTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAAACTGATGATTTATCGTTAAAGATGTCTTCATGGAAAAGTCTA  933

seq1  GTCGATTAGATAAATTGGGAAAATATAAAATGGCAGAGTTAGTTGACCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATTAGATAAATTGGGAAAATATAAAATGGCAGAGTTAGTTGACCTG  983

seq1  AATAATGCATTAAATATGCATTATTACAATATTAGTTGTACATTAATTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCATTAAATATGCATTATTACAATATTAGTTGTACATTAATTGA  1033

seq1  CATCCTTAATAATAAATTAGCATACTATTATATGATTGCTAAATGTTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAATAATAAATTAGCATACTATTATATGATTGCTAAATGTTTAA  1083

seq1  TTATGTTTTTGAAAATCTAAATTATTGATTATATTTTCCACCAACATCTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTGAAAATCTAAATTATTGATTATATTTTCCACCAACATCTA  1133

seq1  ATTTGTAAGAATTC  1163
      ||||||||||||||
seq2  ATTTGTAAGAATTC  1147


seq1: chr14_117664333_117664787
seq2: B6Ng01-273E04.g_66_520

seq1  GAATTCCAGATCAAATATTGAATGTGAAGCTGTTGTTTCTGTCTTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCAAATATTGAATGTGAAGCTGTTGTTTCTGTCTTCTTCT  50

seq1  CCTGGGTCAGAACCTTCAACGCATCAAGTAGGTTTTTCATCTAAAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCAGAACCTTCAACGCATCAAGTAGGTTTTTCATCTAAAATCAA  100

seq1  ACAAGTCTATTTGTGAATAATTAGCTCTTGAATGATGAGTGACAGCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCTATTTGTGAATAATTAGCTCTTGAATGATGAGTGACAGCTAGT  150

seq1  AGGGAAACTTGGAACCCCCTCCCTTCCCTTTAATGAGTTAGCAATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTTGGAACCCCCTCCCTTCCCTTTAATGAGTTAGCAATTTTTT  200

seq1  CTTAATTTGATAAGAAATAGCACTATTCAGAGCCTAAAGAACTTGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTGATAAGAAATAGCACTATTCAGAGCCTAAAGAACTTGAGCAA  250

seq1  TACTGGTGATATTACTTAGTAAACAAGTGACATGATCTTATAAAGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGATATTACTTAGTAAACAAGTGACATGATCTTATAAAGTGTAT  300

seq1  TTTATTTTATAAATATAATAATATATATCCACATGAATGATTTAATACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATAAATATAATAATATATATCCACATGAATGATTTAATACCA  350

seq1  CTGACAGGAAAGATACCTTGCTTAATAGTCCAATAAAGTTTTTTTCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGAAAGATACCTTGCTTAATAGTCCAATAAAGTTTTTTTCAAGA  400

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTAGTGTGAG  450
      ||||||||||||||||||||||||||||||||||||| |||  |||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAG  450

seq1  TGTGT  455
      |||||
seq2  TGTGT  455


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