BAC Information

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BAC

Clone NameB6Ng01-273I04
Chromosome14 (Build37)
Map Location 65,035,761 - 65,222,637
singlet/doubletdoublet
Overlap geneMsra
Upstream geneBlk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273I04.bB6Ng01-273I04.g
ACCGA075065GA075066
length996948
definitionB6Ng01-273I04.b B6Ng01-273I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,222,071 - 65,222,637)(65,035,761 - 65,036,714)
sequence
gaattcagtttgtgaggcacatcagcaaggggccaaacatcagtggcaca
gtcttaagccactaatctagagatgggggatacaacagtggcgtggattt
tacctttaaagaattttcaatacagcaaaggtaaaacttgaataaaatgg
ctaagcacatgctgggcagggataactaacacaggctgtctttaaaaggt
catgtggttttggaaatattaaataacagagcctctgcagggaacagtat
atagaggcttctcagaaagttaaacacagaatatcacatgatttggcatc
ccaattctgcatatatatccaaaggaagaaggaatgccagcagataatac
tatgcctatgtgtgccacagcagcattctcaaatggtcagagtgcagaag
cagcctgagtatccatcattagaggaaggacacataaatgtatgcacaca
cacatacacgcacatgcatatgaacacatgcatgcacatatacacatgca
tatatatacatacacacaattctcatatgcacacacatgtacacacatgc
acacacatactcatatgtacacacatactcacatgtacacacatacatac
atgcacatacatactcacatgcacacacatgcacacacatacatgcacac
atatgcacatgcatactcacatgtacacacatgctcacatgcatacatat
acacacatgtacacacatacatacatacacacacacacacacacacacac
acacacacacacacacacacacgtacatgtcctcaccacagacgtttttg
ttttgcttttgttggcctcaaactcactatgaacccaaggatgatatctt
agttagggttttctatagcaaatgactgttcttctgaactggggtttaca
gtttcaagaagtttagtccattgtcacggcaaggaagccatggcagcgtg
cccgcagacatggatctagaaagggagctgagagtttatacacttt
gaattcaccgaccacaaacatccctgcacagacacctacccacccacctc
cccacccacctcccaaaaatggttcaagcaagacacacacacacgcacac
acgtgcacgcatacacacccacaaaaaaaaaaaaaaaaaaaaaaatgacc
aagctcacagttcctgtttgcccttcaagtgaagtcggtgtcttcagctt
gcctttctggtcttcggcaggcattgccactaattgctgggggtgtcgat
tgggatggcatgaagctgcagaaatcaaagctgtggctttaagagatcgc
tttctcaaacacatggaagaaacaactttgactcagactccctggccagg
ttgcattaaaaatcttagaaagactccttgaaaactcaatatctagaaat
ggggaggggggaattaagtaacataaaaatacttaagtctacaagctgcc
actccaaacataactccgaagatctctggtttgatctgaaatcaggtttg
tattgatgagaaagtttattttgtagaaagttacgattctctctaattag
acactctccttgccatcttctctagtaattctgtctctcacggtcatgat
catacattccaaaagaattaaatcaaatacattgtttcccgaatgcatgg
acactagactagggaggatgcctttttgaaacaggctttttttttttctt
tttcttttctttttttttttttctttttcctgcctgaatgctggtaacta
aatgtcatagtaagaaccaacactcccgaacaccccaagagacttcaaaa
gctttctaagtttgaaaaccaaaaagttgtgagttttcctgtatcccagg
acgttttctttctgaagcttcaagcaggaaacagaacaaaagagctgata
cgactgagcttctgcagtcttgccttgaagttctcagctctcctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65222071_65222637
seq2: B6Ng01-273I04.b_47_613 (reverse)

seq1  CATATGAGTATGTGTGTGCATGTGTGTACATGTGTGTGCATATGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGTATGTGTGTGCATGTGTGTACATGTGTGTGCATATGAGAATT  50

seq1  GTGTGTATGTATATATATGCATGTGTATATGTGCATGCATGTGTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTATATATATGCATGTGTATATGTGCATGCATGTGTTCATAT  100

seq1  GCATGTGCGTGTATGTGTGTGTGCATACATTTATGTGTCCTTCCTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCGTGTATGTGTGTGTGCATACATTTATGTGTCCTTCCTCTAAT  150

seq1  GATGGATACTCAGGCTGCTTCTGCACTCTGACCATTTGAGAATGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATACTCAGGCTGCTTCTGCACTCTGACCATTTGAGAATGCTGCTG  200

seq1  TGGCACACATAGGCATAGTATTATCTGCTGGCATTCCTTCTTCCTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACATAGGCATAGTATTATCTGCTGGCATTCCTTCTTCCTTTGGA  250

seq1  TATATATGCAGAATTGGGATGCCAAATCATGTGATATTCTGTGTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCAGAATTGGGATGCCAAATCATGTGATATTCTGTGTTTAACT  300

seq1  TTCTGAGAAGCCTCTATATACTGTTCCCTGCAGAGGCTCTGTTATTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAAGCCTCTATATACTGTTCCCTGCAGAGGCTCTGTTATTTAAT  350

seq1  ATTTCCAAAACCACATGACCTTTTAAAGACAGCCTGTGTTAGTTATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAACCACATGACCTTTTAAAGACAGCCTGTGTTAGTTATCCCT  400

seq1  GCCCAGCATGTGCTTAGCCATTTTATTCAAGTTTTACCTTTGCTGTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATGTGCTTAGCCATTTTATTCAAGTTTTACCTTTGCTGTATTG  450

seq1  AAAATTCTTTAAAGGTAAAATCCACGCCACTGTTGTATCCCCCATCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTTAAAGGTAAAATCCACGCCACTGTTGTATCCCCCATCTCTA  500

seq1  GATTAGTGGCTTAAGACTGTGCCACTGATGTTTGGCCCCTTGCTGATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGGCTTAAGACTGTGCCACTGATGTTTGGCCCCTTGCTGATGTG  550

seq1  CCTCACAAACTGAATTC  567
      |||||||||||||||||
seq2  CCTCACAAACTGAATTC  567

seq1: chr14_65035761_65036714
seq2: B6Ng01-273I04.g_66_1013

seq1  GAATTCACCGACCACAAACATCCCTGCACAGACACCTACCCACCCACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGACCACAAACATCCCTGCACAGACACCTACCCACCCACCTC  50

seq1  CCCACCCACCTCCCAAAAATGGTTCAAGCAAGACACACACACACGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCTCCCAAAAATGGTTCAAGCAAGACACACACACACGCACAC  100

seq1  ACGTGCACGCATACACACCCACAAAAAAAAAAAAAAAAAAAAAAATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCACGCATACACACCCACAAAAAAAAAAAAAAAAAAAAAAATGACC  150

seq1  AAGCTCACAGTTCCTGTTTGCCCTTCAAGTGAAGTCGGTGTCTTCAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACAGTTCCTGTTTGCCCTTCAAGTGAAGTCGGTGTCTTCAGCTT  200

seq1  GCCTTTCTGGTCTTC----GGCATTGCCACTAATTGCTGGGGGTGTCGAT  246
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  GCCTTTCTGGTCTTCGGCAGGCATTGCCACTAATTGCTGGGGGTGTCGAT  250

seq1  TGGGATGGCATGAAGCTGCAGAAATCAAAGCTGTGGCTTTAAGAGATCGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGCATGAAGCTGCAGAAATCAAAGCTGTGGCTTTAAGAGATCGC  300

seq1  TTTCTCAAACACATGGAAGAAACAACTTTGACTCAGACTCCCTGGCCAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAACACATGGAAGAAACAACTTTGACTCAGACTCCCTGGCCAGG  350

seq1  TTGCATTAAAAATCTTAGAAAGACTCCTTGAAAACTCAATATCTAGAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAAAAATCTTAGAAAGACTCCTTGAAAACTCAATATCTAGAAAT  400

seq1  GGGGAGGGGGGAATTAAGTAACATAAAAATACTTAAGTCTACAAGCTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGGGAATTAAGTAACATAAAAATACTTAAGTCTACAAGCTGCC  450

seq1  ACTCCAAACATAACTCCGAAGATCTCTGGTTTGATCTGAAATCAGGTTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAACATAACTCCGAAGATCTCTGGTTTGATCTGAAATCAGGTTTG  500

seq1  TATTGATGAGAAAGTTTATTTTGTAGAAAGTTACGATTCTCTCTAATTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGAGAAAGTTTATTTTGTAGAAAGTTACGATTCTCTCTAATTAG  550

seq1  ACACTCTCCTTGCCATCTTCTCTAGTAATTCTGTCTCTCACGGTCATGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCTTGCCATCTTCTCTAGTAATTCTGTCTCTCACGGTCATGAT  600

seq1  CATACATTCCAAAAGAATTAAATCAAATACATTGTTTCCCGAATGCATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCCAAAAGAATTAAATCAAATACATTGTTTCCCGAATGCATGG  650

seq1  ACACTAGACTAGGGAGGATGCCTTTTTGAAACAGGCTTTTTTTTTTTCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGACTAGGGAGGATGCCTTTTTGAAACAGGCTTTTTTTTTTTCTT  700

seq1  TTTTCTTTTTCTTTTTTTTTTTTTCTTTTTTCCTGCCTGAATGCTGGTAA  746
      |||   ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTT--CTTTTCTTTTTTTTTTTTTC-TTTTTCCTGCCTGAATGCTGGTAA  747

seq1  CTAAATGTCATAGTAAGAACCAACACTCCCGAACACCCCAAGAGACTTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTCATAGTAAGAACCAACACTCCCGAACACCCCAAGAGACTTCA  797

seq1  AAAGCTTTCTAAGTTTGAAAACCAAAAAGTTGTGAGTTTTCCTGTATCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTCTAAGTTTGAAAACCAAAAAGTTGTGAGTTTTCCTGTATCCC  847

seq1  AGGACGGTTTTCTTTCTGAAGC-TCAAGCAGGGAAACAG-ACAAAAGAGG  894
      ||||| |||||||||||||||| ||||||| |||||||| |||||||| |
seq2  AGGAC-GTTTTCTTTCTGAAGCTTCAAGCA-GGAAACAGAACAAAAGA-G  894

seq1  CTGATACGACTGAGC-TCTGCCAAGTCTTGCCTTTTAAAATTTCCTCAGC  943
      ||||||||||||||| |||||  |||||||||||    || || ||||||
seq2  CTGATACGACTGAGCTTCTGC--AGTCTTGCCTT---GAAGTT-CTCAGC  938

seq1  TCTCCCTCTGC  954
      ||| |||||||
seq2  TCT-CCTCTGC  948