BAC Information

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BAC

Clone NameB6Ng01-274C17
Chromosome17 (Build37)14 (Build37)
Map Location 28,949,875 - 28,950,97418,901,906 - 18,902,665
singlet/doubletsingletsinglet
Overlap geneBrpf3
Upstream geneD17Wsu92e, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13
Downstream genePnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274C17.bB6Ng01-274C17.g
ACCGA075545GA075546
length1,094987
definitionB6Ng01-274C17.b B6Ng01-274C17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,949,875 - 28,950,974)(18,901,906 - 18,902,665)
sequence
gaattcagtgtttggctagattggctggccagcatgtcttctcctgcata
tgcagctcttagcttaccctagcaagccttcccagccaaacctctcccta
tccagacgcctctctgttttgtattctctcagcagttaaaaataaaaagg
tttagctggtggtggtggtagcacacagctttatcctatagcactggagg
cagaggcaggaaggtctttgtgagttccaggccacctggtttccagagca
agttccaggacagccagagctgttacacggagaaactcagtctaaaaaaa
caaacaaacaaacccccaaaaaggtttatttttttaaattcttttttttt
taagatttatttattttatgtatgccagtacactgtagctatacagatgg
ttctgagccttcatgtagttgttgggaattgaattttaggacctctgctc
gctctggtcaaccccactggctagggtcggccctgctctctcagtccctg
cctgctttggcccaaagatttatttattattatacataagtacactgtag
ctgacttcagacacaccagaagagggcgtcagatcccattacagatggtt
gtgagccaccatgtagttgctgggatttgaactcagaacccttttgaagc
gcagtcagtgctctaacccactgagccagccccgtttattttgtttttaa
tttgtgtgtgtattataaatgtgtggggagtgtgtgtcctgagacctggt
acctcagaggccagagggggttctctcagcattctctacttcttttatgg
cccaggttttggttcctttaagctgtcattttcctgtgttgcaaatccct
cagcaacagtgcccacttctggaacaggattcactgattttttttttttt
taaggtttattttatttatttgtttttttactctcaagtgtgtgtgcctg
tgtttaaacactaagcagtagtggctgccactgtgtgcaggtgcctgtag
agacagaggcatattcctaggagctggagttagagagtgtaaatcagtcc
tggcaagagcgtacccaccctcttagccccgcatttgctgaatt
gaattcacgcagttgaatccttctcaacagtctgtgttacgggaacactt
cattaccaccgttccccagctgaagagttctgaatccaggctggatcctt
ctcaacagtctgttttacgggaacacttcattaccatgacccgcagttct
ggttctggaatgagggatcttccttgcgctggtgatggtaaccgtcccgg
gttttctcgtcccaggttttctcgtcccaggtcttctcatcccgggtttc
agcaccaactcttacacgcgttctcgagaccggccaggaagaacgcaaca
aacctgaatcttctgcggcaaaagctttattgcttacatcttcaggagcc
agagagcaagagagcaagagagcaagagagagaacaagaacaagaaagca
agaaaaagaacaagaacaagaaagcaagagaaagaatggcaaaaccccgt
cccttttaaggagaattatcctccgcctaggacgtattactccctgattg
gctgcagcccatcggcccagttgtcatcacgagaaaggcagaacacatgg
cgggaaaactgcccctgcacgtgtgcagattatgtttaccacttagaaca
cagctgtcagcgccatcttgcaacggcgaatgtgagggcggcttcccaca
aataataactgggaattcagactttactacacggggaggggagggaggcc
agcttccggtacataagctcctctctgagaaagttcccagcagcccagtg
agttaccgcagggccacagcaggggaggcagctgagcttcagagatttat
acagagtactctggggtttttctcaaggctgtgttggagggacagggcat
tcaactccagaaaggtcaaaatcccttgtttttcagttagtacagaaccc
aagtccacattccttatggccttgctggcggcttcccaggaaattgatct
ggtcacagctcatccagtcatctctcatgaaaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28949875_28950974
seq2: B6Ng01-274C17.b_44_1137

seq1  GAATTCAGTGTTTGGCTAGATTGGCTGGCCAGCATGTCTTCTCCTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTTTGGCTAGATTGGCTGGCCAGCATGTCTTCTCCTGCATA  50

seq1  TGCAGCTCTTAGCTTACCCTAGCAAGCCTTCCCAGCCAAACCTCTCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTTAGCTTACCCTAGCAAGCCTTCCCAGCCAAACCTCTCCCTA  100

seq1  TCCAGACGCCTCTCTGTTTTGTATTCTCTCAGCAGTTAAAAATAAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACGCCTCTCTGTTTTGTATTCTCTCAGCAGTTAAAAATAAAAAGG  150

seq1  TTTAGCTGGTGGTGGTGGTAGCACACAGCTTTATCCTATAGCACTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGTGGTGGTGGTAGCACACAGCTTTATCCTATAGCACTGGAGG  200

seq1  CAGAGGCAGGAAGGTCTTTGTGAGTTCCAGGCCACCTGGTTTCCAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGAAGGTCTTTGTGAGTTCCAGGCCACCTGGTTTCCAGAGCA  250

seq1  AGTTCCAGGACAGCCAGAGCTGTTACACGGAGAAACTCAGTCTAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGAGCTGTTACACGGAGAAACTCAGTCTAAAAAAA  300

seq1  CAAACAAACAAACCCCCAAAAAGGTTTATTTTTTTAAATTCTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACCCCCAAAAAGGTTTATTTTTTTAAATTCTTTTTTTTT  350

seq1  TAAGATTTATTTATTTTATGTATGCCAGTACACTGTAGCTATACAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTATTTATTTTATGTATGCCAGTACACTGTAGCTATACAGATGG  400

seq1  TTCTGAGCCTTCATGTAGTTGTTGGGAATTGAATTTTAGGACCTCTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCCTTCATGTAGTTGTTGGGAATTGAATTTTAGGACCTCTGCTC  450

seq1  GCTCTGGTCAACCCCACTGGCTAGGGTCGGCCCTGCTCTCTCAGTCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTCAACCCCACTGGCTAGGGTCGGCCCTGCTCTCTCAGTCCCTG  500

seq1  CCTGCTTTGGCCCAAAGATTTATTTATTATTATACATAAGTACACTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGGCCCAAAGATTTATTTATTATTATACATAAGTACACTGTAG  550

seq1  CTGACTTCAGACACACCAGAAGAGGGCGTCAGATCCCATTACAGATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCAGACACACCAGAAGAGGGCGTCAGATCCCATTACAGATGGTT  600

seq1  GTGAGCCACCATGTAGTTGCTGGGATTTGAACTCAGAACCCTTTTGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTAGTTGCTGGGATTTGAACTCAGAACCCTTTTGAAGC  650

seq1  GCAGTCAGTGCTCTAACCCACTGAGCCAGCCCCGTTTATTTTGTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCTAACCCACTGAGCCAGCCCCGTTTATTTTGTTTTTAA  700

seq1  TTTGTGTGTGTATTATAAATGTGTGGGGAGTGTGTGTCCTGAGACCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTATTATAAATGTGTGGGGAGTGTGTGTCCTGAGACCTGGT  750

seq1  ACCTCAGAGGCCAGAGGGGGTTCTCTCAGCATTCTCTACTTCTTTTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAGGCCAGAGGGGGTTCTCTCAGCATTCTCTACTTCTTTTATGG  800

seq1  CCCAGGTTTTGGTTCCTTTAAGCTGTCATTTTCCTGTGTTGCAAATCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTTGGTTCCTTTAAGCTGTCATTTTCCTGTGTTGCAAATCCCT  850

seq1  CAGCAACAGTGCCCACTTCTGGAACAGGATTCACTGA-TTTTTTTTTTTT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCAACAGTGCCCACTTCTGGAACAGGATTCACTGATTTTTTTTTTTTT  900

seq1  TAAGGTTTATTTTATTTATTTGTTTTTTTACTTCTCAAGTGTGTGTGCCT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAGGTTTATTTTATTTATTTGTTTTTTTAC-TCTCAAGTGTGTGTGCCT  949

seq1  GTGTTTAAACACTAAGCAGGTAGTGGCTGCCACTGTGTGCAGGTGCCTGT  999
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTTTAAACACTAAGCA-GTAGTGGCTGCCACTGTGTGCAGGTGCCTGT  998

seq1  AGAGACCAGAGGCATATTCCTAGGAGCTGGAGTTAGAGGAAGTTGTAAAT  1049
      ||||| ||||||||||||||||||||||||||||||||  || |||||||
seq2  AGAGA-CAGAGGCATATTCCTAGGAGCTGGAGTTAGAG--AG-TGTAAAT  1044

seq1  CAGTCCTGTGCAAGAGCGGTACCCACCCTC-TAGCCCCGCATTTGCTGAT  1098
      |||||||| |||||||| |||||||||||| |||||||||||||||||| 
seq2  CAGTCCTG-GCAAGAGC-GTACCCACCCTCTTAGCCCCGCATTTGCTGAA  1092

seq1  TT  1100
      ||
seq2  TT  1094

seq1: chr14_18901906_18902665
seq2: B6Ng01-274C17.g_64_706 (reverse)

seq1  AGCCGCCCTCACATTTGCCATTACAAGATGGCGCTGACAGCTGTGTTCTA  50
      ||||||||||||||| ||| || |||||||||||||||||||||||||||
seq2  AGCCGCCCTCACATTCGCCGTTGCAAGATGGCGCTGACAGCTGTGTTCTA  50

seq1  AGTAGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTG  100

seq1  TTCTGCCTTTCTCATGATGACAACTGGGCCAATGGGCTGCAGCCAATCAG  150
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAG  150

seq1  GGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGT  200

seq1  TTTGCCATTCTTTCTCT--CTCTCTTGTTCTTGCTTTTTCTCTCTCTTGC  248
      |||||||||||||||||  || |||||||||||           ||||  
seq2  TTTGCCATTCTTTCTCTTGCTTTCTTGTTCTTG----------TTCTTTT  240

seq1  TCTTGCTTTCTTGTTCTTGTTCTTTTTCTTGCTTTCTTGCTCTCTCTTGC  298
      |||||||||||||||||||||                  |||||||||||
seq2  TCTTGCTTTCTTGTTCTTGTT------------------CTCTCTCTTGC  272

seq1  TCTTGCTCTTGCTCTCTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAA  348
      |    ||||||||||||||| |||| ||||||||||||||||||||||||
seq2  T----CTCTTGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAA  318

seq1  G-TTTTGCCGCAGAAGATTCTGGTTTGCTGCGTCTTTCCTGGCCGG--TC  395
      | |||||||||||||||||| |||||| |||||  |||||||||||  ||
seq2  GCTTTTGCCGCAGAAGATTCAGGTTTGTTGCGTTCTTCCTGGCCGGTCTC  368

seq1  GAGAACGCGTGTAAGAGTTGGTGCTGAGACCCGGGATGAGAAGACCTGGG  445
      ||||||||||||||||||||||||||| |||||||||             
seq2  GAGAACGCGTGTAAGAGTTGGTGCTGAAACCCGGGAT-------------  405

seq1  ACGAGAAGACCTGGGACGAGAAGACCTGGGACGAGAAGACCCGGGACGAG  495
                                                        
seq2  --------------------------------------------------  405

seq1  AAGACCTGGGACGAGAAGACCCGGGACGAGAAGACCTGGGACGAGAAAAC  545
                                 |||||||||||||||||||||||
seq2  ---------------------------GAGAAGACCTGGGACGAGAAAAC  428

seq1  CCGGGACGAGAAAACCTGGGACGGTTACCACCACCGGCGCAAGGAAGATC  595
      | |||||||||||||| ||||||||||||| |||| ||||||||||||||
seq2  CTGGGACGAGAAAACCCGGGACGGTTACCATCACCAGCGCAAGGAAGATC  478

seq1  CCTCATTCCGGAACCAGAACTGCAGGTCATGGTAATGAAGTGTTCCTGTA  645
      ||||||||| ||||||||||||| |||||||||||||||||||||| |||
seq2  CCTCATTCCAGAACCAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTA  528

seq1  AAACAGACTGTTGAGAAGGATCCAGCCTGGATTCAGAACTCCTCAGCTGG  695
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACAGACTGTTGAGAAGGATCCAGCCTGGATTCAGAACTCTTCAGCTGG  578

seq1  GGAACAGTGGTAATGAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATT  745
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAACGGTGGTAATGAAGTGTTCCCGTAACACAGACTGTTGAGAAGGATT  628

seq1  CAACTGCGTGGATTC  760
      |||||||||| ||||
seq2  CAACTGCGTGAATTC  643