BAC Information

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BAC

Clone NameB6Ng01-274L22
Chromosome14 (Build37)
Map Location 21,312,810 - 21,405,666
singlet/doubletdoublet
Overlap geneZmynd17, Ppp3cb, Usp54
Upstream gene1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274L22.bB6Ng01-274L22.g
ACCGA075968GA075969
length1,1301,080
definitionB6Ng01-274L22.b B6Ng01-274L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,312,810 - 21,313,937)(21,404,595 - 21,405,666)
sequence
gaattctcaaaaattaagaaaatatattgaaaagggagaagatatttaag
tagacattttaaaaagaatatatgcaaaaggaaaataaacagaagaacac
atacccactggtttccaataaaaaaaaaattaatgaaatagaatgtcatc
cccccataaagatggctgtcaaaaaagaaggaaaaaaaaaaggacattta
tggatctcactcagaatctcaatacgtgagaggcaggaagaatgccatag
attctagacctgccaagactatacagtaattttgagactagtcaggaata
cagtgtctcaataaaagaaaagaaaggaaggaaataaaaaaaacatagaa
ttagctgggcagtggtggtacacgcctttaatcccagcacttgggaggca
gaggcaggtggatttctgagttcaagaccagcctggtcttctacagagtg
agttccagtacagccaggactatacaaagaaaccctgtctcgaaaaacca
aaaaccaaaaaaacaaaacaaaagaaaaaccatagaattactacatgtca
aagcaatttcattcttgtgtatgcacctccaaataactgaaaatggtttt
ctaaaaaaatgttctgatgtgcatgttcagaacaacactgttcagaatag
tcaacaagaaactaaaggtccaataaaaatgaacaatgaacacactggga
tttataaggagaggaaagaagagttggagaggagtaaacttggagaagga
caagtagattgatagttgtcagggactggatagaagtaaatgagggataa
ctgcctcagatgagttttcttttaggaatgaaaatgtttcagatctagat
acaaaggttatataacatcgtgaatatatttaacattttttaattaatta
aaacttttgagacaggtttcaagtatcccaaactgatatcaaacttccta
tgaggtggagaatgagtttcgtatctgattcttctgcctctatctcatga
gtgttccaattacaaatatatactactatgctggatttatgaagatgaga
tcaaaccaggctccataccacacccaggagagtaatcaacactacacaca
gaggagcacctaatggcaattttattgcta
gaattcaaaggcagtctgtgctgcatgaggctgtatctcaataaaacaac
aaatgctgatggaagagctaggcgtggtagtgcatgcctgtagtctcagc
actcagaagtctgaggcttaagcatcaccatgtttgaggctagacgagcc
tacatagtgaacatctccagcaagggctacacagtgtggtcttgttcagg
tttgggggaaggaagataagtgttggtggagtctgctgaaggattatgtg
agatggtcgaccgtgtgatggattttcccttctctttttccttcccaaag
ctgtttttcagagtgacagatgaccgggccaagcagtctgaactatactt
agtaggaatgatctgttactatggcaagcattattctacattcttttttc
aaacaaagatccgcaaatggatgtattttgatgatgctcatgtcaaggag
gtatgaatatgcaaggatcttgaagtatttggtgactgaaataaaaataa
aatcacatttatttgtcttcagttttattttgataattttgaatggttgt
tacagtgttggtaaggcatacatactttgtgactgcattggttgttttta
tttttcttagaagtgatttaattttattattttaaaagctgtgtctgtgt
gtgtgtgcacatttgtgcttgcccacttatgtgggtatgtgcatatgagt
gcaagtgcccacagagtccagaggagtcagctctccctccctgggcctga
aattacaggcgtttgtgagccacttgacatgggtgttgggaactgaactc
ccgtcatgttgagaacattaagcagtcttaactgttgagccatctctcca
acccccagtttgttctttttctgaatcaggttcctggtctgtagtccagg
ctggcctggaacttgacaatgtagtccaggctatcctcattgtagatgat
ccacattacagatagagctctaacacttgggcctttaatctgctaaatgt
agtgcatttattgtaaattcttgtaatggaataagaacagatatgcttta
ataattttcctccatcttcgtctaggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21312810_21313937
seq2: B6Ng01-274L22.b_47_1176

seq1  GAATTCTCAAAAATTAAGAAAATATATTGAAAAGGGAGAAGATATTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAATTAAGAAAATATATTGAAAAGGGAGAAGATATTTAAG  50

seq1  TAGACATTTTAAAAAGAATATATGCAAAAGGAAAATAAACAGAAGAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTTTAAAAAGAATATATGCAAAAGGAAAATAAACAGAAGAACAC  100

seq1  ATACCCACTGGTTTCCAATAAAAAAAAAATTAATGAAATAGAATGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACTGGTTTCCAATAAAAAAAAAATTAATGAAATAGAATGTCATC  150

seq1  CCCCCATAAAGATGGCTGTCAAAAAAGAAGGAAAAAAAAAAGGACATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATAAAGATGGCTGTCAAAAAAGAAGGAAAAAAAAAAGGACATTTA  200

seq1  TGGATCTCACTCAGAATCTCAATACGTGAGAGGCAGGAAGAATGCCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCACTCAGAATCTCAATACGTGAGAGGCAGGAAGAATGCCATAG  250

seq1  ATTCTAGACCTGCCAAGACTATACAGTAATTTTGAGACTAGTCAGGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGACCTGCCAAGACTATACAGTAATTTTGAGACTAGTCAGGAATA  300

seq1  CAGTGTCTCAATAAAAGAAAAGAAAGGAAGGAAATAAAAAAAACATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCAATAAAAGAAAAGAAAGGAAGGAAATAAAAAAAACATAGAA  350

seq1  TTAGCTGGGCAGTGGTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGGCAGTGGTGGTACACGCCTTTAATCCCAGCACTTGGGAGGCA  400

seq1  GAGGCAGGTGGATTTCTGAGTTCAAGACCAGCCTGGTCTTCTACAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATTTCTGAGTTCAAGACCAGCCTGGTCTTCTACAGAGTG  450

seq1  AGTTCCAGTACAGCCAGGACTATACAAAGAAACCCTGTCTCGAAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTACAGCCAGGACTATACAAAGAAACCCTGTCTCGAAAAACCA  500

seq1  AAAACCAAAAAAACAAAACAAAAGAAAAACCATAGAATTACTACATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAAACAAAACAAAAGAAAAACCATAGAATTACTACATGTCA  550

seq1  AAGCAATTTCATTCTTGTGTATGCACCTCCAAATAACTGAAAATGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTTCATTCTTGTGTATGCACCTCCAAATAACTGAAAATGGTTTT  600

seq1  CTAAAAAAATGTTCTGATGTGCATGTTCAGAACAACACTGTTCAGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAATGTTCTGATGTGCATGTTCAGAACAACACTGTTCAGAATAG  650

seq1  TCAACAAGAAACTAAAGGTCCAATAAAAATGAACAATGAACACACTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGAAACTAAAGGTCCAATAAAAATGAACAATGAACACACTGGGA  700

seq1  TTTATAAGGAGAGGAAAGAAGAGTTGGAGAGGAGTAAACTTGGAGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGGAGAGGAAAGAAGAGTTGGAGAGGAGTAAACTTGGAGAAGGA  750

seq1  CAAGTAGATTGATAGTTGTCAGGGACTGGATAGAAGTAAATGAGGGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGATTGATAGTTGTCAGGGACTGGATAGAAGTAAATGAGGGATAA  800

seq1  CTGCCTCAGATGAGTTTTCTTTTAGGAATGAAAATGTTTCAGATCTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGATGAGTTTTCTTTTAGGAATGAAAATGTTTCAGATCTAGAT  850

seq1  ACAAAGGTTATATAACATCGTGAATATATTTAACATTTTTTAATTAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTATATAACATCGTGAATATATTTAACATTTTTTAATTAATTA  900

seq1  AAACTTTTGAGACAGGGTTTCAAGTATCCCAAACTGATATCAAACTTCCT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGAGACA-GGTTTCAAGTATCCCAAACTGATATCAAACTTCCT  949

seq1  ATGAGGT-GAGAATGAGTTTCGTATCTGATTCTTCTGCCTCTATCTCATG  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTGGAGAATGAGTTTCGTATCTGATTCTTCTGCCTCTATCTCATG  999

seq1  AGTGTTCCAATTACAAATATATACTACTATGCTGGATTTATGAAGGATGA  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGTTCCAATTACAAATATATACTACTATGCTGGATTTATGAA-GATGA  1048

seq1  GAATCAAACCAGGGCTCCATA-CACA-CCAGGAGAGT-ATCAACACTACA  1096
      | ||||||||| ||||||||| |||| |||||||||| ||||||||||||
seq2  G-ATCAAACCA-GGCTCCATACCACACCCAGGAGAGTAATCAACACTACA  1096

seq1  CACAGA-GAGCA-CTAAATGCCATTTTATTGCTA  1128
      |||||| ||||| ||||  || ||||||||||||
seq2  CACAGAGGAGCACCTAATGGCAATTTTATTGCTA  1130

seq1: chr14_21404595_21405666
seq2: B6Ng01-274L22.g_69_1143 (reverse)

seq1  AATGCCTAGAAAGGAGACTGAG--AAAATAATAAAGCATATCCTGTTCTT  48
      ||||||||| | | |||  |||  ||| || |||||||||| ||||||||
seq2  AATGCCTAG-ACGAAGATGGAGGAAAATTATTAAAGCATAT-CTGTTCTT  48

seq1  A-TCCATTAC-AGAATTTACAATAAATGCACTTACATTTAGCAGA-TAAA  95
      | |||||||| |||||||||||||||||||| ||||||||||||| ||||
seq2  ATTCCATTACAAGAATTTACAATAAATGCAC-TACATTTAGCAGATTAAA  97

seq1  GG-CCAAGTGTAAGAGCTCTTATCTGTAATGT-GATCATCTACAATTGAG  143
      || |||||||| ||||||| |||||||||||| |||||||||||| ||||
seq2  GGCCCAAGTGTTAGAGCTC-TATCTGTAATGTGGATCATCTACAA-TGAG  145

seq1  GATAGCCTGGACTACATTGTC-AGTTCCAGGCCAGCCTGGACTACAGACC  192
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATAGCCTGGACTACATTGTCAAGTTCCAGGCCAGCCTGGACTACAGACC  195

seq1  AGGACCCTGATTCAGAAAAAGAACAAACTGGGGGTTGGAGAGATGGCTCA  242
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGATTCAGAAAAAGAACAAACTGGGGGTTGGAGAGATGGCTCA  245

seq1  ACAGTTAAGACTGCTTAATGTTCTCAACATGACGGGAGTTCAGTTCCCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAGACTGCTTAATGTTCTCAACATGACGGGAGTTCAGTTCCCAA  295

seq1  CACCCATGTCAAGTGGCTCACAAACGCCTGTAATTTCAGGCCCAGGGAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGTCAAGTGGCTCACAAACGCCTGTAATTTCAGGCCCAGGGAGG  345

seq1  GAGAGCTGACTCCTCTGGACTCTGTGGGCACTTGCACTCATATGCACATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGACTCCTCTGGACTCTGTGGGCACTTGCACTCATATGCACATA  395

seq1  CCCACATAAGTGGGCAAGCACAAATGTGCACACACACACAGACACAGCTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATAAGTGGGCAAGCACAAATGTGCACACACACACAGACACAGCTT  445

seq1  TTAAAATAATAAAATTAAATCACTTCTAAGAAAAATAAAAACAACCAATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATAAAATTAAATCACTTCTAAGAAAAATAAAAACAACCAATG  495

seq1  CAGTCACAAAGTATGTATGCCTTACCAACACTGTAACAACCATTCAAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAAAGTATGTATGCCTTACCAACACTGTAACAACCATTCAAAAT  545

seq1  TATCAAAATAAAACTGAAGACAAATAAATGTGATTTTATTTTTATTTCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATAAAACTGAAGACAAATAAATGTGATTTTATTTTTATTTCAG  595

seq1  TCACCAAATACTTCAAGATCCTTGCATATTCATACCTCCTTGACATGAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAATACTTCAAGATCCTTGCATATTCATACCTCCTTGACATGAGC  645

seq1  ATCATCAAAATACATCCATTTGCGGATCTTTGTTTGAAAAAAGAATGTAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAAATACATCCATTTGCGGATCTTTGTTTGAAAAAAGAATGTAG  695

seq1  AATAATGCTTGCCATAGTAACAGATCATTCCTACTAAGTATAGTTCAGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTTGCCATAGTAACAGATCATTCCTACTAAGTATAGTTCAGAC  745

seq1  TGCTTGGCCCGGTCATCTGTCACTCTGAAAAACAGCTTTGGGAAGGAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCCCGGTCATCTGTCACTCTGAAAAACAGCTTTGGGAAGGAAAA  795

seq1  AGAGAAGGGAAAATCCATCACACGGTCGACCATCTCACATAATCCTTCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGAAAATCCATCACACGGTCGACCATCTCACATAATCCTTCAG  845

seq1  CAGACTCCACCAACACTTATCTTCCTTCCCCCAAACCTGAACAAGACCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCACCAACACTTATCTTCCTTCCCCCAAACCTGAACAAGACCAC  895

seq1  ACTGTGTAGCCCTTGCTGGAGATGTTCACTATGTAGGCTCGTCTAGCCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAGCCCTTGCTGGAGATGTTCACTATGTAGGCTCGTCTAGCCTC  945

seq1  AAACATGGTGATGCTTAAGCCTCAGACTTCTGAGTGCTGAGACTACAGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGTGATGCTTAAGCCTCAGACTTCTGAGTGCTGAGACTACAGGC  995

seq1  ATGCACTACCACGCCTAGCTCTTCCATCAGCATTTGTTGTTTTATTGAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTACCACGCCTAGCTCTTCCATCAGCATTTGTTGTTTTATTGAGA  1045

seq1  TACAGCCTCATGCAGCACAGACTGCCTTTG  1072
      ||||||||||||||||||||||||||||||
seq2  TACAGCCTCATGCAGCACAGACTGCCTTTG  1075