BAC Information

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BAC

Clone NameB6Ng01-276A06
Chromosome14 (Build37)
Map Location 89,237,713 - 89,238,903
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A06.bB6Ng01-276A06.g
ACCGA076899GA076900
length1,186954
definitionB6Ng01-276A06.b B6Ng01-276A06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatggaggaaagtggggaggaactaggaagaatataggtaaga
ggaacaaaaatctgcatatattatataataaaaattttattttcaagaac
aagaaaaataaaatctaaaaagcaatcaatcaataaataataataaaaac
agtaacaacgacctctttctatagtttgctaaaattactcttttaaactc
cttaaaaaactttcaaatcttcaaaatatttgtttctaaattaaaagtat
tttcttatcgattatatgtactgattgctttttataaaaccccttttgta
ttacaaatctcactttaattgactgcaacatgaaatgaccttgtacctat
atctccacatcttcttggatagtttcctttctttcttgttttaagtattt
atttaattttttttaggtgtgtagacttggacttctctatttgaccctgg
acatagaagtttatcatagatcttattaagagagagccttgtaatgaaag
cagcaacctatacccagaggctcctgagacaggaattagattttttggaa
aaatgagtttctctctattaatttctcatactgagcagtgtgaccgctag
tgacaggagcgttgggcagcagtgaccaggagatatgatcaatcaggctt
gatggactccttaccttcagtgatttcattccacctctggggacacaact
tcaaagatgagcattgggtatttttcatttattttaggtgtcctctgtaa
ctccaaatgggatttcactttgtgtcttttcctctccgatacttatataa
gacagcagactgcaatagttgtcaccagttgaatgatggcaatttgattt
atgtgtcattttacattgtgctagatagggaaggaactctttaaaaaatt
atgtgaaacaattttaggtatatcatggtaaagtcattttaaatttcttc
acatgaaaacatgataataaacattaactatcaatgttatgtttcaatcc
tcctacaatatatattagtatagttcatatcatatgttcttttcagtact
atctttccacattagatactaactatacctattgcccttttcatactttg
taatcttagttcacaaggctaacacattaacgaatttattaataaaaatt
tctcttgtcagtatcacacgttatacaagctcaaga

gaattcagtaaaatcatgaatctgactaatgctgaaagaagcacaagtct
atggactaaaaatataaatattttgaaggtaattggagccaggcagcggt
ggcaaaagcctttaatcccagcacttgggaggcagaggcaggcagatttc
tgagtttgaggctattcaggacagccagggctacacagagaaatcctgtc
tcaaaaaaaaaaaaaaaaggtaattgggtgtccccattcctccactggac
actctatctactggaggtgttttcttcaggttccatctagcctctattgg
tatttcggttaaggtactttctagatgttcccccagtcacaaacttccca
cagctgtatatttccattcattcacatggacaccctaggcttctctcctg
tctctttctcatacctgatcctgtccactatttctctctccctcccatat
cccatctaggtccgtgtctcaggtctcttatgattattttgttcctcctt
ctaaacaagaaagaaatactctgccttgggccttctttcttgttaaacta
agtctgtgatttgtatcatgggttttctgtactacctaatttttttgtcc
cagaattgttctggtctaaaagaactgcagagacaaaaatggagcagaga
ttgaaggaaaggccacacagtaaccagctcaatttggaatccatctcatg
ggcaggcaccaaaccctgaaactattactaatgccatgctgtgcttcaaa
caggagcctagcatggctgtcatctgagagtgtctaccagcaactgactg
agacagatgtaaccaaccattgttctgatatctcggacccctatagaaga
gttaggggaaggactgaaggagctgaaagcaatagcaactccttaggaat
aacatatcaactgggcaacatgggctggtcagatgcatatgtagcagaga
ggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89237713_89238903
seq2: B6Ng01-276A06.b_48_1233

seq1  GAATTCACATGGAGGAAAGTGGGGAGGAACTAGGAAGAATATAGGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGAGGAAAGTGGGGAGGAACTAGGAAGAATATAGGTAAGA  50

seq1  GGAACAAAAATCTGCATATATTATATAATAAAAATTTTATTTTCAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAATCTGCATATATTATATAATAAAAATTTTATTTTCAAGAAC  100

seq1  AAGAAAAATAAAATCTAAAAAGCAATCAATCAATAAATAATAATAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATAAAATCTAAAAAGCAATCAATCAATAAATAATAATAAAAAC  150

seq1  AGTAACAACGACCTCTTTCTATAGTTTGCTAAAATTACTCTTTTAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAACGACCTCTTTCTATAGTTTGCTAAAATTACTCTTTTAAACTC  200

seq1  CTTAAAAAACTTTCAAATCTTCAAAATATTTGTTTCTAAATTAAAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAACTTTCAAATCTTCAAAATATTTGTTTCTAAATTAAAAGTAT  250

seq1  TTTCTTATCGATTATATGTACTGATTGCTTTTTATAAAACCCCTTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCGATTATATGTACTGATTGCTTTTTATAAAACCCCTTTTGTA  300

seq1  TTACAAATCTCACTTTAATTGACTGCAACATGAAATGACCTTGTACCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATCTCACTTTAATTGACTGCAACATGAAATGACCTTGTACCTAT  350

seq1  ATCTCCACATCTTCTTGGATAGTTTCCTTTCTTTCTTGTTTTAAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACATCTTCTTGGATAGTTTCCTTTCTTTCTTGTTTTAAGTATTT  400

seq1  ATTTAATTTTTTTTAGGTGTGTAGACTTGGACTTCTCTATTTGACCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTTTTTAGGTGTGTAGACTTGGACTTCTCTATTTGACCCTGG  450

seq1  ACATAGAAGTTTATCATAGATCTTATTAAGAGAGAGCCTTGTAATGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAGTTTATCATAGATCTTATTAAGAGAGAGCCTTGTAATGAAAG  500

seq1  CAGCAACCTATACCCAGAGGCTCCTGAGACAGGAATTAGATTTTTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCTATACCCAGAGGCTCCTGAGACAGGAATTAGATTTTTTGGAA  550

seq1  AAATGAGTTTCTCTCTATTAATTTCTCATACTGAGCAGTGTGACCGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTTTCTCTCTATTAATTTCTCATACTGAGCAGTGTGACCGCTAG  600

seq1  TGACAGGAGCGTTGGGCAGCAGTGACCAGGAGATATGATCAATCAGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGCGTTGGGCAGCAGTGACCAGGAGATATGATCAATCAGGCTT  650

seq1  GATGGACTCCTTACCTTCAGTGATTTCATTCCACCTCTGGGGACACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTCCTTACCTTCAGTGATTTCATTCCACCTCTGGGGACACAACT  700

seq1  TCAAAGATGAGCATTGGGTATTTTTCATTTATTTTAGGTGTCCTCTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATGAGCATTGGGTATTTTTCATTTATTTTAGGTGTCCTCTGTAA  750

seq1  CTCCAAATGGGATTTCACTTTGTGTCTTTTCCTCTCCGATACTTATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATGGGATTTCACTTTGTGTCTTTTCCTCTCCGATACTTATATAA  800

seq1  GACAGCAGACTGCAATAGTTGTCACCAGTTGAATGATGGCAATTTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGACTGCAATAGTTGTCACCAGTTGAATGATGGCAATTTGATTT  850

seq1  ATGTGTCATTTTACATTGTGCTAGATAGGGAAGGAACTCTTTAAAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATTTTACATTGTGCTAGATAGGGAAGGAACTCTTTAAAAAATT  900

seq1  ATGTGAAACAATTTTAGGTATATCATGGTAAAGTCATTTTAAATTTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACAATTTTAGGTATATCATGGTAAAGTCATTTTAAATTTCTTC  950

seq1  ACATGAAAACATGATAATAAACATTAACTATCAATGTTATGTTTCAATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAACATGATAATAAACATTAACTATCAATGTTATGTTTCAATCC  1000

seq1  TCCTACAAATTATATTATTAGTTATAGTTCATATCATTATGTTCCTTTTC  1050
      ||||||||  |||| |||||| |||||||||||||| |||||| ||||||
seq2  TCCTACAA--TATA-TATTAG-TATAGTTCATATCA-TATGTT-CTTTTC  1044

seq1  AGTAACTATCTTTTCACATTAGAATACTAACTTATACCTA-TGCCC-TTT  1098
      ||| ||||||||| |||||||| |||||||| |||||||| ||||| |||
seq2  AGT-ACTATCTTTCCACATTAG-ATACTAAC-TATACCTATTGCCCTTTT  1091

seq1  CATACTTTGTAATTCTTAAGTCACAAAGGCTTACACATTACAGA--TTA-  1145
      |||||||||||| |||||  |||| |||||| ||||||||  ||  ||| 
seq2  CATACTTTGTAA-TCTTAGTTCAC-AAGGCTAACACATTAACGAATTTAT  1139

seq1  TAATAAAAA-TTCTC-TGTCAGTTATCA-ACATTATACAAGCCACAAGA  1191
      ||||||||| ||||| |||||| ||||| || ||||||||| | |||||
seq2  TAATAAAAATTTCTCTTGTCAG-TATCACACGTTATACAAG-CTCAAGA  1186


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