BAC Information

Click to search

BAC

Clone NameB6Ng01-276I14
Chromosome14 (Build37)
Map Location 75,847,523 - 76,061,791
singlet/doubletdoublet
Overlap geneGm912, Spert, 4930564B18Rik
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
Downstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276I14.bB6Ng01-276I14.g
ACCGA077295GA077296
length1,2011,105
definitionB6Ng01-276I14.b B6Ng01-276I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,847,523 - 75,848,686)(76,060,692 - 76,061,791)
sequence
gaattctgtacaagattcacgctgtccccttaaagataacacttgaatcc
tacagaaggaatttcacagcttttctgtaaccagcctcctgagcaagcct
atctcccctctcttgttctgcaactataaaggctcatgtctggtggatgt
catccagacaacagtgcccctcagagaaacttgactccacattctccaga
tcgtggtcactcatatttctatttttcctttagagcagaatggctatctt
atagttacacacaaaaggtaagatgcatgcttcatttttaattctattta
tttgccagttactaaaacaatacatttacgtgccaaacataacctaaagg
gagccaagtagtttctagtgtcatcgtgagtgcagggatttaaatacaca
tgacacattgaccccagtgcagttaggatgttcagtggtgcacctgtggc
ctctttccagcagggacctctttgtgttggcttctgagtctctaataagg
ccacgccattgtggtcttcttttcttttttcttctgctttactttctggg
atgatgagatgaaccaagctcaccttacacctctccattgcttaagagct
ctctactctattggtatcttgtttcaaatgggaagatggttgagaaacca
ccccctggcctccgtggtactcctttcctgaggtcttctcactacacaga
gctaaatgcacgtctcctcttctctttcctgctccctcctgtgctttctc
cctcctctcactcctcccctccctcttccttttcccatctctctcatctc
ctttttcttctcatctacctgctctttttatgtccccacctttttctctc
ccttaacataaaacacagcattttgtgtttatttcatgttattctgtatt
attgataggggttattcaaatctaaccctcatcagcctcacacccacggt
cccattgtttttattactaacgaccaccaacaataaattatcccattgcc
ctcatctacaatacaacacattcgagtaactttcaaaaccctagaaggcg
taagggccagggttaaacactaaattattattcaacaagtttcttagaag
ggtgagcacaatctgttctgggttcagaagtctttcccagggagatgaca
aggtgaaatgttgttcaagggtttcattcatctgaagttcttgacgtggg
c
gaattctcttgttaacccccctgcccctgtaacgtgttttacatattcta
gtgtggcattggagtttgcccggtccaagaagctcttctctgtgccttta
aaattgttccaacatctccctgcagggtttctagtgctttttcacttttt
ttttttttttgctagcaggtcgtttattttcaacgcctcgtgctttatac
acagttccattcgcttgacagcattgtgtttgtcctactccagtgggtaa
tatatttacacagatccagcacatggaggggacatgttaagaatacttga
tccatactgtgccgaagaaaagcaagagctgctatttttcagtattagca
ttacactcggtatttggacagcggagatcttaggatcccaagagggagcc
tgatggtagaggcacacagagaagaatttgctggccatagagcagtcatt
tctgcaatgctcagcttccacaagggtagcaggaattgaggatgctatag
ctgaagagatccaagagaatgtaaggataaacgctgagggtaacaaaacc
agtcccaggaatatagtttagttcttaatttaggtccgcatcaagatgat
tcagatgactcggggcttttagtttctctacctgattggatatgatcatg
cattcaggacatcctgggaagatgccacatgaatctctatgccaggacac
attagctagagctcgcaaatagcgcagtggccgttgttgccaaagtaaaa
cccaacgcaaggtgatgctgacaattccaagaatgggactgtaaaaaaat
gtcagtccttggctgagagccatcactcagcagtgtggtaagaaatatcc
cttctagtgggggctgcatctgggaagcagtgtctggtggcctagtgcca
gactgtaggccctgtgttctaaggaaataccccttcttacgtgtttgagg
atgggccttgggtctctgctctactttcctgagtgctggatcaccgggca
tgcaccaccaccatccagtttatggtgggtaggggcacctctaggccctc
atgggtgctacagccactctaccaactaagctactccaagtctctacggc
ctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75847523_75848686
seq2: B6Ng01-276I14.b_47_1247

seq1  GAATTCTGTACAAGATTCACGCTGTCCCCTTAAAGATAACACTTGAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACAAGATTCACGCTGTCCCCTTAAAGATAACACTTGAATCC  50

seq1  TACAGAAGGAATTTCACAGCTTTTCTGTAACCAGCCTCCTGAGCAAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGAATTTCACAGCTTTTCTGTAACCAGCCTCCTGAGCAAGCCT  100

seq1  ATCTCCCCTCTCTTGTTCTGCAACTATAAAGGCTCATGTCTGGTGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCTCTCTTGTTCTGCAACTATAAAGGCTCATGTCTGGTGGATGT  150

seq1  CATCCAGACAACAGTGCCCCTCAGAGAAACTTGACTCCACATTCTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGACAACAGTGCCCCTCAGAGAAACTTGACTCCACATTCTCCAGA  200

seq1  TCGTGGTCACTCATATTTCTATTTTTCCTTTAGAGCAGAATGGCTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTCACTCATATTTCTATTTTTCCTTTAGAGCAGAATGGCTATCTT  250

seq1  ATAGTTACACACAAAAGGTAAGATGCATGCTTCATTTTTAATTCTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACACACAAAAGGTAAGATGCATGCTTCATTTTTAATTCTATTTA  300

seq1  TTTGCCAGTTACTAAAACAATACATTTACGTGCCAAACATAACCTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGTTACTAAAACAATACATTTACGTGCCAAACATAACCTAAAGG  350

seq1  GAGCCAAGTAGTTTCTAGTGTCATCGTGAGTGCAGGGATTTAAATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGTAGTTTCTAGTGTCATCGTGAGTGCAGGGATTTAAATACACA  400

seq1  TGACACATTGACCCCAGTGCAGTTAGGATGTTCAGTGGTGCACCTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTGACCCCAGTGCAGTTAGGATGTTCAGTGGTGCACCTGTGGC  450

seq1  CTCTTTCCAGCAGGGACCTCTTTGTGTTGGCTTCTGAGTCTCTAATAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGCAGGGACCTCTTTGTGTTGGCTTCTGAGTCTCTAATAAGG  500

seq1  CCACGCCATTGTGGTCTTCTTTTCTTTTTTCTTCTGCTTTACTTTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCATTGTGGTCTTCTTTTCTTTTTTCTTCTGCTTTACTTTCTGGG  550

seq1  ATGATGAGATGAACCAAGCTCACCTTACACCTCTCCATTGCTTAAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGATGAACCAAGCTCACCTTACACCTCTCCATTGCTTAAGAGCT  600

seq1  CTCTACTCTATTGGTATCTTGTTTCAAATGGGAAGATGGTTGAGAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCTATTGGTATCTTGTTTCAAATGGGAAGATGGTTGAGAAACCA  650

seq1  CCCCCTGGCCTCCGTGGTACTCCTTTCCTGAGGTCTTCTCACTACACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGCCTCCGTGGTACTCCTTTCCTGAGGTCTTCTCACTACACAGA  700

seq1  GCTAAATGCACGTCTCCTCTTCTCTTTCCTGCTCCCTCCTGTGCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGCACGTCTCCTCTTCTCTTTCCTGCTCCCTCCTGTGCTTTCTC  750

seq1  CCTCCTCTCACTCCTCCCCTCCCTCTTCCTTTTCCCATCTCTCTCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCACTCCTCCCCTCCCTCTTCCTTTTCCCATCTCTCTCATCTC  800

seq1  CTTTTTCTTCTCATCTACCTGCTCTTTTTATGTCCCCACC-TTTTCTCTC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTTTTCTTCTCATCTACCTGCTCTTTTTATGTCCCCACCTTTTTCTCTC  850

seq1  CCTTAACAT-AAACACAGCA-TTTGTGTTTA-TTCATGTTATTCTGTATT  896
      ||||||||| |||||||||| |||||||||| ||||||||||||||||||
seq2  CCTTAACATAAAACACAGCATTTTGTGTTTATTTCATGTTATTCTGTATT  900

seq1  ATTGATA-GGGTTATTCAAATCTAA-CCTCATCAGCCTCACACCCACGGT  944
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTGATAGGGGTTATTCAAATCTAACCCTCATCAGCCTCACACCCACGGT  950

seq1  CCCATTGTTTT--ATACTAACGA-CACCAACA--TAATTAT-CCATTGCC  988
      |||||||||||   ||||||||| ||||||||   |||||| ||||||||
seq2  CCCATTGTTTTTATTACTAACGACCACCAACAATAAATTATCCCATTGCC  1000

seq1  CTCATCTACAATAC-ACACA-TCGAGTAAC-TTCAAAA-CCTAG-AGGCG  1033
      |||||||||||||| ||||| ||||||||| ||||||| ||||| |||||
seq2  CTCATCTACAATACAACACATTCGAGTAACTTTCAAAACCCTAGAAGGCG  1050

seq1  TAAAGGCCAGGG-TAAACACTA----ATTATATCAC-AGTTTC-TAGA--  1074
      ||| |||||||| |||||||||    |||||   || |||||| ||||  
seq2  TAAGGGCCAGGGTTAAACACTAAATTATTATTCAACAAGTTTCTTAGAAG  1100

seq1  GGTGAGCAC-ATCTGTTCTGG--TCAG-AGTC--TCCCA-GGAGATGGC-  1116
      ||||||||| |||||||||||  |||| ||||  ||||| ||||||| | 
seq2  GGTGAGCACAATCTGTTCTGGGTTCAGAAGTCTTTCCCAGGGAGATGACA  1150

seq1  AGGTGAAATGTTG-TCCAGGGTTTCA-TCATCTGAAG-TCCTGACGTGGG  1163
      ||||||||||||| || ||||||||| |||||||||| || |||||||||
seq2  AGGTGAAATGTTGTTCAAGGGTTTCATTCATCTGAAGTTCTTGACGTGGG  1200

seq1  C  1164
      |
seq2  C  1201

seq1: chr14_76060692_76061791
seq2: B6Ng01-276I14.g_69_1173 (reverse)

seq1  AACAGCCCGTAGAGACTGGGAAGTAGCTTAGTTGGTAGAGTGCTTGGTAG  50
      ||||| ||||||||||| || |||||||||||||||||||||  | ||||
seq2  AACAGGCCGTAGAGACTTGG-AGTAGCTTAGTTGGTAGAGTGGCT-GTAG  48

seq1  CACCCATGAGGCCCTAGGGTTGGCCCCTTACACCACATAAACTGGAT-GT  99
      ||||||||||| ||||| | ||  ||| ||| |  |||||||||||| ||
seq2  CACCCATGAGGGCCTAGAGGTG--CCCCTACCCACCATAAACTGGATGGT  96

seq1  GGTGGTGCATG-CCGGTGATCCCAGCACTCAGG-AAGTAGAGCAGAGACC  147
      ||||||||||| |||||||| |||||||||||| ||||||||||||||||
seq2  GGTGGTGCATGCCCGGTGAT-CCAGCACTCAGGAAAGTAGAGCAGAGACC  145

seq1  CAAGG-CCATCCTCAAACACGT-AGA--GGGTATTTCC-TAGAACACA-G  191
      ||||| |||||||||||||||| |||  |||||||||| ||||||||| |
seq2  CAAGGCCCATCCTCAAACACGTAAGAAGGGGTATTTCCTTAGAACACAGG  195

seq1  GCCTACAGTCTGGCACTAGGCCACCAGACACTGCTTCCCAGATGCAGCCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGTCTGGCACTAGGCCACCAGACACTGCTTCCCAGATGCAGCCC  245

seq1  CCACTAGAAGGGATA-TTCTTACCACACTGCTGAGTGATGGCTCTCAGCC  290
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACTAGAAGGGATATTTCTTACCACACTGCTGAGTGATGGCTCTCAGCC  295

seq1  AAGGACTGACATTTTTTTACAGTCCCATTCTTGGAATTGTCAGCATCACC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGACATTTTTTTACAGTCCCATTCTTGGAATTGTCAGCATCACC  345

seq1  TTGCGTTGGGTTTTACTTTGGCAACAACGGCCACTGCGCTATTTGCGAGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTGGGTTTTACTTTGGCAACAACGGCCACTGCGCTATTTGCGAGC  395

seq1  TCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATCTTCCCAGGAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATCTTCCCAGGAT  445

seq1  GTCCTGAATGCATGATCATATCCAATCAGGTAGAGAAACTAAAAGCCCCG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAATGCATGATCATATCCAATCAGGTAGAGAAACTAAAAGCCCCG  495

seq1  AGTCATCTGAATCATCTTGATGCGGACCTAAATTAAGAACTAAACTATAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAATCATCTTGATGCGGACCTAAATTAAGAACTAAACTATAT  545

seq1  TCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTACATTCTCTTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTACATTCTCTTGG  595

seq1  ATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTGTGGAAGCTGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTGTGGAAGCTGA  645

seq1  GCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTCTCTGTGTGCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTCTCTGTGTGCC  695

seq1  TCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGCTGTCCAAATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGCTGTCCAAATA  745

seq1  CCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCTTTTCTTCGGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCTTTTCTTCGGC  795

seq1  ACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGTGCTGGATCTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGTGCTGGATCTG  845

seq1  TGTAAATATATTACCCACTGGAGTAGGACAAACACAATGCTGTCAAGCGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATATTACCCACTGGAGTAGGACAAACACAATGCTGTCAAGCGA  895

seq1  ATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACGACCTGCTAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACGACCTGCTAGC  945

seq1  AAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCAGGGAGATGTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCAGGGAGATGTT  995

seq1  GGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCGGGCAAACTCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCGGGCAAACTCC  1045

seq1  AATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAGGGGGGTTAAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAGGGGGGTTAAC  1095

seq1  AAGAGAATTC  1100
      ||||||||||
seq2  AAGAGAATTC  1105