BAC Information

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BAC

Clone NameB6Ng01-278J18
Chromosome14 (Build37)
Map Location 99,594,604 - 99,724,142
singlet/doubletdoublet
Overlap geneD14Ertd581e, LOC100043395, LOC100043397, Klf5
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278J18.bB6Ng01-278J18.g
ACCGA078807GA078808
length1,164654
definitionB6Ng01-278J18.b B6Ng01-278J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,594,604 - 99,595,738)(99,723,489 - 99,724,142)
sequence
gaattctgtgaattctccattcataggttaaattgataggctaactaata
tagaacatgaaaatacagtgcaggtcttgagaacagcatgatttctcggc
attactggtacttcttaaaaaaacattgtttcctttcagtccttggaatt
gtttacctagagagcaaaggctacacagagaaaccctgtcttgaaaaacc
ataaccaaccaaacaaaccaagggcagttatagagtgcacagcacggtgg
gctgtgggtatgtgcctgttatcctaacacttggactaatgtacggggag
cagggattgaggccagcctaggatacagacttaagaccctgccagggatg
gggacataaaacactggcaggaagggggttcctttagtacagactctgcc
tgtactgtggtcattctccgcatgttattacacgcctcttccacctccac
atgcagtaggaaacctgttggattatgttttgtattacaaaattcataat
attgactaggataaacactttccaaaatgtaagcttttgcacataatatt
caagtaatttcaaataataattttaataattcaaataatttttgcacaca
gtattcaaataattccaggtaataattttaagtaatttgtaatttggaaa
cttttgttaaaatgagaaagctataaatggctctcttttctggcaagcta
gtaacataatgtaattctgcctcaatggggcagagctaaaaaccatagtc
aagtaatcagtataccacacttaccatatggaaatgtcagggttgctaaa
gtcttgctcgtgtggcgttctttgctttgtattgccattgccttctgtta
ctatgtgtgttgctaggaaaggatgggtccacctttctagcattacaaat
acctgttgtgtgtttaggcagcattctactttggtgtaaaataaagtgct
tttcattttatttacctagtgtccacttggcaaagaagagtttcttcagt
tagaaaaaacaaaaatttcattaatttttaaaagaattcttggaccaatc
aaaagaaccaaagtaagaacaggctttcacaaaggaggtggagttagctg
ggatcgggaagaacccagaagcaggcgctcgctttgccttctgcaatggc
cctgtttaccaccg

gaattcctactgaaatacttaggaatggaagaataaagtgtttgagacac
acttttgaataataaaagggtaggaagcaggaagccagcggaagaacagg
ccaattaaagttgcaagtgaggtggtcattgttgaggcctggaaatgtgc
ttggaaatctgagggatcagtatgccagcaatggtgatgagtcagtaccc
aagagcgctgacagacccaggtgatgtcaccacttcctgcctcaggaagt
ctcaggtgggggaggagggctggtggcccatagatcagatcaaaggcctg
ggcacttttctcccttcctctctaagtccgagcagcagacatgccattcg
gtggcacagagcttttttttcagttggtggacagagcacttcctgggtgg
cttctccagctctggagtctggtcctctgcccgacagctcaagtcctccc
tgggtcctctagggataggtgggatctgtagttccttctccaagcagata
gacccacttacatcgtcttctccaggctaacatctataggctggccaagg
tttgctgaacggcaaaggagcctgggaaagcctgtgcataaactgaaagc
tgtcttggggtccagcctccttagcttcttggttatgataggatgaccta
cacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99594604_99595738
seq2: B6Ng01-278J18.b_46_1209

seq1  GAATTCTGTGAATTCTCCATTCATAGGTTAAATTGATAGGCTAACTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATTCTCCATTCATAGGTTAAATTGATAGGCTAACTAATA  50

seq1  TAGAACATGAAAATACAGTGCAGGTCTTGAGAACAGCATGATTTCTCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATGAAAATACAGTGCAGGTCTTGAGAACAGCATGATTTCTCGGC  100

seq1  ATTACTGGTACTTCTTAAAAAAACATTGTTTCCTTTCAGTCCTTGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGGTACTTCTTAAAAAAACATTGTTTCCTTTCAGTCCTTGGAATT  150

seq1  GTTTACCTAGAGAGCAAAGGCTACACAGAGAAACCCTGTCTTGAAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTAGAGAGCAAAGGCTACACAGAGAAACCCTGTCTTGAAAAACC  200

seq1  ATAACCAACCAAACAAACCAAGGGCAGTTATAGAGTGCACAGCACGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAACCAAACAAACCAAGGGCAGTTATAGAGTGCACAGCACGGTGG  250

seq1  GCTGTGGGTATGTGCCTGTTATCCTAACACTTGGACTAATGTACGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGTATGTGCCTGTTATCCTAACACTTGGACTAATGTACGGGGAG  300

seq1  CAGGGATTGAGGCCAGCCTAGGATACAGACTTAAGACCCTGCCAGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTGAGGCCAGCCTAGGATACAGACTTAAGACCCTGCCAGGGATG  350

seq1  GGGACATAAAACACTGGCAGGAAGGGGGTTCCTTTAGTACAGACTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATAAAACACTGGCAGGAAGGGGGTTCCTTTAGTACAGACTCTGCC  400

seq1  TGTACTGTGGTCATTCTCCGCATGTTATTACACGCCTCTTCCACCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGGTCATTCTCCGCATGTTATTACACGCCTCTTCCACCTCCAC  450

seq1  ATGCAGTAGGAAACCTGTTGGATTATGTTTTGTATTACAAAATTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTAGGAAACCTGTTGGATTATGTTTTGTATTACAAAATTCATAAT  500

seq1  ATTGACTAGGATAAACACTTTCCAAAATGTAAGCTTTTGCACATAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAGGATAAACACTTTCCAAAATGTAAGCTTTTGCACATAATATT  550

seq1  CAAGTAATTTCAAATAATAATTTTAATAATTCAAATAATTTTTGCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATTTCAAATAATAATTTTAATAATTCAAATAATTTTTGCACACA  600

seq1  GTATTCAAATAATTCCAGGTAATAATTTTAAGTAATTTGTAATTTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAATAATTCCAGGTAATAATTTTAAGTAATTTGTAATTTGGAAA  650

seq1  CTTTTGTTAAAATGAGAAAGCTATAAATGGCTCTCTTTTCTGGCAAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTAAAATGAGAAAGCTATAAATGGCTCTCTTTTCTGGCAAGCTA  700

seq1  GTAACATAATGTAATTCTGCCTCAAT-GGGCAGAGCTAAAAACCATAGTC  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAACATAATGTAATTCTGCCTCAATGGGGCAGAGCTAAAAACCATAGTC  750

seq1  AAGTAATCAGTATACCACACTTACCATATGGAAATGTCAGGGTTGCTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCAGTATACCACACTTACCATATGGAAATGTCAGGGTTGCTAAA  800

seq1  GTCTTGCTCGTGTGGCGTTCTTTGCTTTGTATTGCCATTGCCTTCTGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTCGTGTGGCGTTCTTTGCTTTGTATTGCCATTGCCTTCTGTTA  850

seq1  CTATGTGTGTTGCTAGGAAAGGATGGGTCCACC-TTCTAGCA-TACAAAT  897
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  CTATGTGTGTTGCTAGGAAAGGATGGGTCCACCTTTCTAGCATTACAAAT  900

seq1  ACCTGTTGTGTGTTTAGGCAGCATTCTACTTTGGTGTACA--TAAGTGCT  945
      |||||||||||||||||||||||||||||||||||||| |   |||||||
seq2  ACCTGTTGTGTGTTTAGGCAGCATTCTACTTTGGTGTAAAATAAAGTGCT  950

seq1  TTTCATTTTATTTACCTAGTGTCCACTTGGC-AAGAAGAG-TTCTTCAGT  993
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TTTCATTTTATTTACCTAGTGTCCACTTGGCAAAGAAGAGTTTCTTCAGT  1000

seq1  TAG-AAAAACAAAA--TTCATTAA-TTTTAAAAGA--TC-TGGACC-ATC  1035
      ||| ||||||||||  |||||||| ||||||||||  || |||||| |||
seq2  TAGAAAAAACAAAAATTTCATTAATTTTTAAAAGAATTCTTGGACCAATC  1050

seq1  AAAAGAACC-AAGTAAG-ACA-GCTTTCACAA--GAGGT-GAG-TAGCTG  1078
      ||||||||| ||||||| ||| ||||||||||  ||||| ||| ||||||
seq2  AAAAGAACCAAAGTAAGAACAGGCTTTCACAAAGGAGGTGGAGTTAGCTG  1100

seq1  GG-TC-GGAAG-ACCCAGAAGCAAGGCGCTCGC-TTGCC-TCTGCA--TG  1121
      || || ||||| |||||||||| |||||||||| ||||| ||||||   |
seq2  GGATCGGGAAGAACCCAGAAGC-AGGCGCTCGCTTTGCCTTCTGCAATGG  1149

seq1  CCCTG-TTACCACCG  1135
      ||||| |||||||||
seq2  CCCTGTTTACCACCG  1164


seq1: chr14_99723489_99724142
seq2: B6Ng01-278J18.g_71_724 (reverse)

seq1  CGTGTAGGTCATCCTATCATAACCAAGAAGCTAAGGAGGCTGGACCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGGTCATCCTATCATAACCAAGAAGCTAAGGAGGCTGGACCCCAA  50

seq1  GACAGCTTTCAGTTTATGCACAGGCTTTCCCAGGCTCCTTTGCCGTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTTCAGTTTATGCACAGGCTTTCCCAGGCTCCTTTGCCGTTCAG  100

seq1  CAAACCTTGGCCAGCCTATAGATGTTAGCCTGGAGAAGACGATGTAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTGGCCAGCCTATAGATGTTAGCCTGGAGAAGACGATGTAAGTG  150

seq1  GGTCTATCTGCTTGGAGAAGGAACTACAGATCCCACCTATCCCTAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATCTGCTTGGAGAAGGAACTACAGATCCCACCTATCCCTAGAGGA  200

seq1  CCCAGGGAGGACTTGAGCTGTCGGGCAGAGGACCAGACTCCAGAGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAGGACTTGAGCTGTCGGGCAGAGGACCAGACTCCAGAGCTGGA  250

seq1  GAAGCCACCCAGGAAGTGCTCTGTCCACCAACTGAAAAAAAAGCTCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACCCAGGAAGTGCTCTGTCCACCAACTGAAAAAAAAGCTCTGTG  300

seq1  CCACCGAATGGCATGTCTGCTGCTCGGACTTAGAGAGGAAGGGAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGAATGGCATGTCTGCTGCTCGGACTTAGAGAGGAAGGGAGAAAAG  350

seq1  TGCCCAGGCCTTTGATCTGATCTATGGGCCACCAGCCCTCCTCCCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGCCTTTGATCTGATCTATGGGCCACCAGCCCTCCTCCCCCACC  400

seq1  TGAGACTTCCTGAGGCAGGAAGTGGTGACATCACCTGGGTCTGTCAGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTCCTGAGGCAGGAAGTGGTGACATCACCTGGGTCTGTCAGCGC  450

seq1  TCTTGGGTACTGACTCATCACCATTGCTGGCATACTGATCCCTCAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTACTGACTCATCACCATTGCTGGCATACTGATCCCTCAGATTT  500

seq1  CCAAGCACATTTCCAGGCCTCAACAATGACCACCTCACTTGCAACTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACATTTCCAGGCCTCAACAATGACCACCTCACTTGCAACTTTAA  550

seq1  TTGGCCTGTTCTTCCGCTGGCTTCCTGCTTCCTACCCTTTTATTATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGTTCTTCCGCTGGCTTCCTGCTTCCTACCCTTTTATTATTCAA  600

seq1  AAGTGTGTCTCAAACACTTTATTCTTCCATTCCTAAGTATTTCAGTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCTCAAACACTTTATTCTTCCATTCCTAAGTATTTCAGTAGGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654


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