BAC Information

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BAC

Clone NameB6Ng01-279C04
Chromosome14 (Build37)
Map Location 104,842,709 - 104,956,840
singlet/doubletdoublet
Overlap genePou4f1, 2610206B13Rik
Upstream geneScel, LOC100043448, Slain1, Ednrb
Downstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279C04.bB6Ng01-279C04.g
ACCGA079193GA079194
length1,121454
definitionB6Ng01-279C04.b B6Ng01-279C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,955,712 - 104,956,840)(104,842,709 - 104,843,168)
sequence
gaattcagttattcactccacagaggtctgtgaggagccgctcagttgag
ctgatcttttattgtttttttttttttaattaatagcacgtgtcttagag
ttgtttttttttaattgatttaaatgtgccttgaatgcaaaaaaaaaata
tttttacagcatttgattttgtattctagtctctgtcagcacattttagg
ttcactggtgagctactgaatgacatgtaatgatatatcttcaatataag
gtgttctttccataaaagtatatggctgtaagctggccatataaagagtt
ggctcaggcaagaatgtccctgcacacaagcttgaggaactgagttagga
tcaccagcattcatgtaaaaactctgagcatgttgaggcatacctgcaac
cctacagcttgtggcagggaagagaagggtgggtctgaaagcttgccagc
cagccactctagctaacacacgagctctaagcccagtgagaggccctgtc
tcaaaaggtaagatggattatatttttatctcaaaaaaaggttttatttc
aaatcagtgtggatatcaatagaagacacctgatgttgaccccaggccta
cacatccatatgtaaacatgcctgtgaacactcatatgcacatatacaaa
cacaaatgtgctcacacatacactgtatgtatgacaagtaaagaaaatta
ttgggtgcaaatatatttctatctcatcatttagtttgaacaaagtatct
aaagactcctgaacaaatccaatgtacaaagtaaaaaaaaaaaaaatcta
tctgcactagtcactttgatgcaatgcagaaaagaaatcagaattttaat
catcaagaagtaccaagatataattcaacgtaaatatttgaggtattttt
aaataaaaaaaaaacctgaaagacatattggatcaatataaaggaagaat
ttaattaatgtattttatacttgggaaacatcaattctttgcaaattatt
ttatgacctaacaaatcaaggggattgtccatgaaccttttgtagacata
ataaatgatttagttcacgtaatgacacatagttagtggactttcaggat
gatggtgataatggcctatga
ctagtaaagtatttataactggattgataggcagcctttaaaatgtgttt
tgatacacgccaaacaaaaacaagcttctcttgaattgtagggatcactg
aatgccatttctctgtcagcaaaacataagaagagaaaatctgcaaaaag
caatgcatatttatttttagggaatcctggagaatggtatccaacagtcc
aagtttcagtcccacagccacttcattgtgacgtgccctctgtgtttgtg
aatcttgtccattagagcaaacatgcccatcacctgaaaggtggttagag
ccatatgggccacctggaggacaaatagagacatttccccaattctatct
tctctttaaacctcattactaaaggaaaatcagctaaaagacataagaca
tttgttttagctaaaaagaaggagaaggagaaggagaaggggaagggggg
aggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104955712_104956840
seq2: B6Ng01-279C04.b_43_1163 (reverse)

seq1  TCATAGGGCAATTATCA-CATCATTTCCTGAAAGTTCCACTTACTTATGT  49
      ||||| ||| ||||||| |||||  ||||||||| |||||| || |||||
seq2  TCATA-GGCCATTATCACCATCA--TCCTGAAAG-TCCACTAAC-TATGT  45

seq1  GTCCTTTAAGTGAACCTTAAAATCATTTTATTATGTTCTTACAAAA-GTT  98
      || | ||| ||||||    |||||| ||||||||||   ||||||| |||
seq2  GT-CATTACGTGAAC---TAAATCA-TTTATTATGT--CTACAAAAGGTT  88

seq1  CATGGACAATCCCCTTGAATTTTGTTAGGTCATAAAATAATTTGCAAAGA  148
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CATGGACAATCCCCTTGA--TTTGTTAGGTCATAAAATAATTTGCAAAGA  136

seq1  ATTGATGTTT-CCAAGTATAAAATACATTTAATTAATTCTT-CTTTATAT  196
      |||||||||| |||||||||||||||||| | | ||||||| ||||||||
seq2  ATTGATGTTTCCCAAGTATAAAATACATTAATTAAATTCTTCCTTTATAT  186

seq1  TGAT-CAATATGTCTTTCAGG-TTTTTTTTTATTTAAAAATACCTCAAAT  244
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGATCCAATATGTCTTTCAGGTTTTTTTTTTATTTAAAAATACCTCAAAT  236

seq1  ATTTTACGTTGAATTATATCTTGGTACTTCTTGATGATTAAAATTCTGAT  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTACGTTGAATTATATCTTGGTACTTCTTGATGATTAAAATTCTGAT  285

seq1  TTCTTTTCTGCATTGCATCAAAGTGACTAGTGCAGATAGA-TTTTTTTTT  343
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTTTTCTGCATTGCATCAAAGTGACTAGTGCAGATAGATTTTTTTTTT  335

seq1  TTTTACTTTGTACATTGGATTTGTTCAGGAGTCTTTAGATACTTTGTTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTGTACATTGGATTTGTTCAGGAGTCTTTAGATACTTTGTTCA  385

seq1  AACTAAATGATGAGATAGAAATATATTTGCACCCAATAATTTTCTTTACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGATGAGATAGAAATATATTTGCACCCAATAATTTTCTTTACT  435

seq1  TGTCATACATACAGTGTATGTGTGAGCACATTTGTGTTTGTATATGTGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATACATACAGTGTATGTGTGAGCACATTTGTGTTTGTATATGTGCA  485

seq1  TATGAGTGTTCACAGGCATGTTTACATATGGATGTGTAGGCCTGGGGTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGTTCACAGGCATGTTTACATATGGATGTGTAGGCCTGGGGTCA  535

seq1  ACATCAGGTGTCTTCTATTGATATCCACACTGATTTGAAATAAAACCTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGTGTCTTCTATTGATATCCACACTGATTTGAAATAAAACCTTT  585

seq1  TTTTGAGATAAAAATATAATCCATCTTACCTTTTGAGACAGGGCCTCTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATAAAAATATAATCCATCTTACCTTTTGAGACAGGGCCTCTCA  635

seq1  CTGGGCTTAGAGCTCGTGTGTTAGCTAGAGTGGCTGGCTGGCAAGCTTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTAGAGCTCGTGTGTTAGCTAGAGTGGCTGGCTGGCAAGCTTTC  685

seq1  AGACCCACCCTTCTCTTCCCTGCCACAAGCTGTAGGGTTGCAGGTATGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACCCTTCTCTTCCCTGCCACAAGCTGTAGGGTTGCAGGTATGCC  735

seq1  TCAACATGCTCAGAGTTTTTACATGAATGCTGGTGATCCTAACTCAGTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGCTCAGAGTTTTTACATGAATGCTGGTGATCCTAACTCAGTTC  785

seq1  CTCAAGCTTGTGTGCAGGGACATTCTTGCCTGAGCCAACTCTTTATATGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTTGTGTGCAGGGACATTCTTGCCTGAGCCAACTCTTTATATGG  835

seq1  CCAGCTTACAGCCATATACTTTTATGGAAAGAACACCTTATATTGAAGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTACAGCCATATACTTTTATGGAAAGAACACCTTATATTGAAGAT  885

seq1  ATATCATTACATGTCATTCAGTAGCTCACCAGTGAACCTAAAATGTGCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTACATGTCATTCAGTAGCTCACCAGTGAACCTAAAATGTGCTG  935

seq1  ACAGAGACTAGAATACAAAATCAAATGCTGTAAAAATATTTTTTTTTTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTAGAATACAAAATCAAATGCTGTAAAAATATTTTTTTTTTGC  985

seq1  ATTCAAGGCACATTTAAATCAATTAAAAAAAAACAACTCTAAGACACGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGCACATTTAAATCAATTAAAAAAAAACAACTCTAAGACACGTG  1035

seq1  CTATTAATTAAAAAAAAAAAAACAATAAAAGATCAGCTCAACTGAGCGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATTAAAAAAAAAAAAACAATAAAAGATCAGCTCAACTGAGCGGC  1085

seq1  TCCTCACAGACCTCTGTGGAGTGAATAACTGAATTC  1129
      ||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGACCTCTGTGGAGTGAATAACTGAATTC  1121

seq1: chr14_104842709_104843168
seq2: B6Ng01-279C04.g_63_522

seq1  GAATTCCTAGTAAAGTATTTATAACTGGATTGATAGGCAGCCTTTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAAAGTATTTATAACTGGATTGATAGGCAGCCTTTAAAAT  50

seq1  GTGTTTTGATACACGCCAAACAAAAACAAGCTTCTCTTGAATTGTAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGATACACGCCAAACAAAAACAAGCTTCTCTTGAATTGTAGGGA  100

seq1  TCACTGAATGCCATTTCTCTGTCAGCAAAACATAAGAAGAGAAAATCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATGCCATTTCTCTGTCAGCAAAACATAAGAAGAGAAAATCTGC  150

seq1  AAAAAGCAATGCATATTTATTTTTAGGGAATCCTGGAGAATGGTATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAATGCATATTTATTTTTAGGGAATCCTGGAGAATGGTATCCAA  200

seq1  CAGTCCAAGTTTCAGTCCCACAGCCACTTCATTGTGACGTGCCCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGTTTCAGTCCCACAGCCACTTCATTGTGACGTGCCCTCTGTG  250

seq1  TTTGTGAATCTTGTCCATTAGAGCAAACATGCCCATCACCTGAAAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATCTTGTCCATTAGAGCAAACATGCCCATCACCTGAAAGGTGG  300

seq1  TTAGAGCCATATGGGCCACCTGGAGGACAAATAGAGACATTTCCCCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCATATGGGCCACCTGGAGGACAAATAGAGACATTTCCCCAATT  350

seq1  CTATCTTCTCTTTAAACCTCATTACTAAAGGAAAATCAGCTAAAAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCTCTTTAAACCTCATTACTAAAGGAAAATCAGCTAAAAGACAT  400

seq1  AAGACATTTGTTTTAGCTAAAAAGAAGGAGAAGGAGAAGGAGAAGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTGTTTTAGCTAAAAAGAAGGAGAAGGAGAAGGAGAAGGGGAA  450

seq1  GGGGGGAGGG  460
      ||||||||||
seq2  GGGGGGAGGG  460