BAC Information

Click to search

BAC

Clone NameB6Ng01-279F03
Chromosome14 (Build37)
Map Location 80,773,511 - 80,898,455
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279F03.bB6Ng01-279F03.g
ACCGA079330GA079331
length7471,073
definitionB6Ng01-279F03.b B6Ng01-279F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,897,709 - 80,898,455)(80,773,511 - 80,774,599)
sequence
gaattcaactctcatcaagtcacccctaatcataaacaagacacacttta
gattttgaacagctaacgagtgttttggcacttctctctgttgcttgcac
ggcaggttgtgtttgttgacggtgtaataaccgcacaaaggtacttcagg
tgtccaattgaaactttacagaattgatgggttttcaagtatacttaggg
ctctcaggaaagtttaactgctaaaaactaaaataaagtgttagtgtaat
tacagccttgaaatggcatctaacagggtttccaacagcattagtagcat
caacagagaggaaactgaccatctaattaggggagagacatgagccttaa
aagttcacagacagtacagaaaagagctgacaaagaagtaaatacagatc
tcttctgttatgcaactttacagtggtatccagttgagtccatggaaaaa
aattaaaaaataaaaacaaatctaagtttgttagcagttcccagatggtc
atacgtgtaattgtaacactcttacctatgctcttagcctctacctcttt
cctcactctctctgttccatgttttccgtcagatccggtcttgtactacc
tatcctatcttactggagatttgaaaaccacagaaactcctctgtggttt
tcaaaaatcagcatttaaagtaattacattcatttagtgtgtgcatttgc
acactagcaatgctgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcaaggccagcatataagttctgactgcctaagtggagtcaaaatg
ctattcctctgggatacccaccccttagctctgcttacgttatggacccc
agattaatggactttctttagctaatgttttcaaggctctgcccaacttt
ttatccctcgggtgattttttttttttttgatgaagtgagtatttactga
aatcatttatccttttttattaaaggaaattggatgatacaattttggta
acatgctctagcattagaaggagttagaaataatgagacacaacccgaat
caacaaagatcatactgtgacctttcctgtgtaggaattcttacaaatgc
cttagccatggacttctctgtgcaagcactcactctgtagaacctacgaa
cctaatgcttggttggtctaccaggaaatgaattagcactgggaaaaagt
tgagcaaaagaaaaaaaaaactcatgtcctcaaagttgaaattagttttc
actgtattttaggactgtctgtgaaccgtcatagattggagacatcagga
aggaagatggtctgaggcaagtggcagaaggaagggctggtaagctgagt
gatagaagctcaaactttagccttccagtaagtttcacttaggggagact
ttccaactgactttctgtcttggtatcagttatagtgttctttatagcag
aaaagaaaagacactctcaaccttctgtaatgtgtaaattgcttttagtc
actctctccaggacagcaagccagtgtcagtttggaagctgttaggctgc
caatcctactgtcaagcagccaggacatttgaattccgatgtgctgaaat
tccatttgtgggttttccctgctacaaatcccaaacatgtagagagaact
ctctggctagaaagcaagagaggcttcacacatcaatctcttttcaaata
ttattttaaacagctctgctcagagaagctagcacaggtacacatgagtg
tttgagagcagggcaggtggtatcttggaggagcatctcttcaagttgag
tgtcttgaattttatccagccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80897709_80898455
seq2: B6Ng01-279F03.b_45_791 (reverse)

seq1  ACACACACACACACACACACACACACACACTGCAGCATTGCTAGTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACTGCAGCATTGCTAGTGTGCA  50

seq1  AATGCACACACTAAATGAATGTAATTACTTTAAATGCTGATTTTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACACTAAATGAATGTAATTACTTTAAATGCTGATTTTTGAAAA  100

seq1  CCACAGAGGAGTTTCTGTGGTTTTCAAATCTCCAGTAAGATAGGATAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGGAGTTTCTGTGGTTTTCAAATCTCCAGTAAGATAGGATAGGT  150

seq1  AGTACAAGACCGGATCTGACGGAAAACATGGAACAGAGAGAGTGAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGACCGGATCTGACGGAAAACATGGAACAGAGAGAGTGAGGAAA  200

seq1  GAGGTAGAGGCTAAGAGCATAGGTAAGAGTGTTACAATTACACGTATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAGGCTAAGAGCATAGGTAAGAGTGTTACAATTACACGTATGAC  250

seq1  CATCTGGGAACTGCTAACAAACTTAGATTTGTTTTTATTTTTTAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGAACTGCTAACAAACTTAGATTTGTTTTTATTTTTTAATTTTT  300

seq1  TTCCATGGACTCAACTGGATACCACTGTAAAGTTGCATAACAGAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGACTCAACTGGATACCACTGTAAAGTTGCATAACAGAAGAGAT  350

seq1  CTGTATTTACTTCTTTGTCAGCTCTTTTCTGTACTGTCTGTGAACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTACTTCTTTGTCAGCTCTTTTCTGTACTGTCTGTGAACTTTTA  400

seq1  AGGCTCATGTCTCTCCCCTAATTAGATGGTCAGTTTCCTCTCTGTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCATGTCTCTCCCCTAATTAGATGGTCAGTTTCCTCTCTGTTGATG  450

seq1  CTACTAATGCTGTTGGAAACCCTGTTAGATGCCATTTCAAGGCTGTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATGCTGTTGGAAACCCTGTTAGATGCCATTTCAAGGCTGTAATT  500

seq1  ACACTAACACTTTATTTTAGTTTTTAGCAGTTAAACTTTCCTGAGAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAACACTTTATTTTAGTTTTTAGCAGTTAAACTTTCCTGAGAGCCC  550

seq1  TAAGTATACTTGAAAACCCATCAATTCTGTAAAGTTTCAATTGGACACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATACTTGAAAACCCATCAATTCTGTAAAGTTTCAATTGGACACCT  600

seq1  GAAGTACCTTTGTGCGGTTATTACACCGTCAACAAACACAACCTGCCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACCTTTGTGCGGTTATTACACCGTCAACAAACACAACCTGCCGTG  650

seq1  CAAGCAACAGAGAGAAGTGCCAAAACACTCGTTAGCTGTTCAAAATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACAGAGAGAAGTGCCAAAACACTCGTTAGCTGTTCAAAATCTAA  700

seq1  AGTGTGTCTTGTTTATGATTAGGGGTGACTTGATGAGAGTTGAATTC  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTTGTTTATGATTAGGGGTGACTTGATGAGAGTTGAATTC  747

seq1: chr14_80773511_80774599
seq2: B6Ng01-279F03.g_64_1136

seq1  GAATTCAAGGCCAGCATATAAGTTCTGACTGCCTAAGTGGAGTCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCATATAAGTTCTGACTGCCTAAGTGGAGTCAAAATG  50

seq1  CTATTCCTCTGGGATACCCACCCCTTAGCTCTGCTTACGTTATGGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTCTGGGATACCCACCCCTTAGCTCTGCTTACGTTATGGACCCC  100

seq1  AGATTAATGGACTTTCTTTAGCTAATGTTTTCAAGGCTCTGCCCAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATGGACTTTCTTTAGCTAATGTTTTCAAGGCTCTGCCCAACTTT  150

seq1  TTATCCCTCGGGTGATTTTTTTTTTTTTTGATGAAGTGAGTATTTACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTCGGGTGATTTTTTTTTTTTTTGATGAAGTGAGTATTTACTGA  200

seq1  AATCATTTATCCTTTTTTATTAAAGGAAATTGGATGATACAATTTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTATCCTTTTTTATTAAAGGAAATTGGATGATACAATTTTGGTA  250

seq1  ACATGCTCTAGCATTAGAAGGAGTTAGAAATAATGAGACACAACCCGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCTAGCATTAGAAGGAGTTAGAAATAATGAGACACAACCCGAAT  300

seq1  CAACAAAGATCATACTGTGACCTTTCCTGTGTAGGAATTCTTACAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGATCATACTGTGACCTTTCCTGTGTAGGAATTCTTACAAATGC  350

seq1  CTTAGCCATGGACTTCTCTGTGCAAGCACTCACTCTGTAGAACCTACGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCATGGACTTCTCTGTGCAAGCACTCACTCTGTAGAACCTACGAA  400

seq1  CCTAATGCTTGGTTGGTCTACCAGGAAATGAATTAGCACTGGGAAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCTTGGTTGGTCTACCAGGAAATGAATTAGCACTGGGAAAAAGT  450

seq1  TGAGCAAAAGAAAAAAAAAACTCATGTCCTCAAAGTTGAAATTAGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAAGAAAAAAAAAACTCATGTCCTCAAAGTTGAAATTAGTTTTC  500

seq1  ACTGTATTTTAGGACTGTCTGTGAACCGTCATAGATTGGAGACATCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTTAGGACTGTCTGTGAACCGTCATAGATTGGAGACATCAGGA  550

seq1  AGGAAGATGGTCTGAGGCAAGTGGCAGAAGGAAGGGCTGGTAAGCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGGTCTGAGGCAAGTGGCAGAAGGAAGGGCTGGTAAGCTGAGT  600

seq1  GATAGAAGCTCAAACTTTAGCCTTCCAGTAAGTTTCACTTAGGGGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGCTCAAACTTTAGCCTTCCAGTAAGTTTCACTTAGGGGAGACT  650

seq1  TTCCAACTGACTTTCTGTCTTGGTATCAGTTATAGTGTTCTTTATAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTGACTTTCTGTCTTGGTATCAGTTATAGTGTTCTTTATAGCAG  700

seq1  AAAAGAAAAGACACTCTCAACCTTCTGTAATGTGTAAATTGCTTTTAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGACACTCTCAACCTTCTGTAATGTGTAAATTGCTTTTAGTC  750

seq1  ACTCTCTCCAGGACAGCAAGCCAGTGTCAGTTTGGAAGCTGTTAGGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCCAGGACAGCAAGCCAGTGTCAGTTTGGAAGCTGTTAGGCTGC  800

seq1  CAATCCTACTGTCAAGCAGCCAGGACATTTGAATTCCGATGTGCTGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTACTGTCAAGCAGCCAGGACATTTGAATTCCGATGTGCTGAAAT  850

seq1  TCCATTTGTGGGTTTTCCCTGCTACAAATCCCAAACATGTAGAGAGAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGTGGGTTTTCCCTGCTACAAATCCCAAACATGTAGAGAGAACT  900

seq1  CTCTGGCTAGAAAGCAAGAGAGGCTTCACACATCAAATCTCTTTTCAAAT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGGCTAGAAAGCAAGAGAGGCTTCACACATC-AATCTCTTTTCAAAT  949

seq1  A-TATTTTAAACAGCTCTGCTCAGAGAAGCCTAGCAACAGGTTACACATT  999
      | ||||||||||||||||||||||||||| ||||| ||||| |||||| |
seq2  ATTATTTTAAACAGCTCTGCTCAGAGAAG-CTAGC-ACAGG-TACACA-T  995

seq1  GAGGTGTTTGAGAAGCAAGGGCAGGTGGTTATCTTTGGAGGAGCCATCTC  1049
      || ||||||||| ||| ||||||||||| |||| ||||||||| ||||||
seq2  GA-GTGTTTGAG-AGC-AGGGCAGGTGG-TATC-TTGGAGGAG-CATCTC  1039

seq1  CTTTCACAGTGGAGTTGGTCTTTGATTTTTATCCAGCCAA  1089
        |||| ||| ||||  ||| |||| ||||||||||||||
seq2  --TTCA-AGTTGAGT--GTC-TTGAATTTTATCCAGCCAA  1073