BAC Information

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BAC

Clone NameB6Ng01-280P12
Chromosome14 (Build37)
Map Location 73,140,544 - 73,279,366
singlet/doubletdoublet
Overlap geneLOC100043721
Upstream geneLOC668477, LOC668482, LOC675957, Fndc3a
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280P12.bB6Ng01-280P12.g
ACCGA080567GA080568
length1,1201,038
definitionB6Ng01-280P12.b B6Ng01-280P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,278,263 - 73,279,366)(73,140,544 - 73,141,583)
sequence
gaattcagtaaaattcttcacatcttgcatcttttcagatgaagtggtta
aaactctgtagctgacaaagagtcctgcagcatgcagcaaataggagcat
ctttgcctgaattctcatgctgagcttgggctgagaatccagtcaaactc
agatccaaggtcatgtgtgttctatatacctacctcttagaatgagaatc
aaggaccctcttgatctgtcagtgctcatgtaaagtgtagcatcccattt
tacaaattggatctcagaatacactgtaaattagttgcttacttccagtt
ccaacaatcccgtgcaatggtctccaccccaagggttggtatgctgaata
attaacactccaaagatcctcgtgtcctactatgggaatcctgagaatat
gctaccctacatggcaaagaatgctttgtagttgtgataacatgcattat
cttgaaatggagataacataagtcatcctgatgggatcaatgtaattatg
acgagttcttatatcaggaggcagaaggttgtaactgaaggagatacagc
aatagatgcctgagactggaatggttagaggaagggggttacagccaaac
agtgcaggtggcctctagaggctgaaggtttcaaaataaacagcagcttt
cttctgaagctgtagaaggagccagcctgggtgaccctgactttaggtta
gtgaaatggattttagacttctaaaacctccagaactgtaatggaaatct
gtgctgtgttaaagttgcatttgttacagcagcaacaggagattcatatg
attagtgtcttccagacagctgtgctttaacttaggccatgcaatcaatc
ccttctcagatcttgtctttaaataccacagtgctcttccaggtgaggtg
aatgctttctccaccctatgtggtcatggtttattctctgtcctcctaat
gaattcccttgtgagctacattttccaatatctggagtgcctggtttcca
gctaagtctgattatgaaaggttgtgggaataggttccccttccattccc
ttccccttccttccacataccatacagacatacttcaacattatcattct
cctctttccttccatctccc
gaattctcacaaaccaaacacgctcattaacaagagcaatttgagaaaca
cttctctcaatgtttgcttttacagtttagttttcagggaccattctctg
attcactgaatcagaaactcaagagctggaagctcatgccacgtgtttac
gtaaattcccccagcaagccttttgcacccacgcaggcaacctgttttat
ttgtaaactctgctcagctcacaggactcatggcttgggtagggtgagac
actagggaaagtctcagtctgggaggaaggtggactaaggtattgccctt
tttagagaaatgttctaacagtagtttgagaagggacagatggcaatccc
cctctagttgccacttagccttcatttctcttttactgttttctcacttg
gtaatagaaccccagtttcagcgaagtaaatagtcaccaagcacacacat
atatggcctcatttgaggtcaaatgtgactgtgaaactaacttttagcca
ttcaggctttccgtggaaatgtcatgtgtgaactggaaaagtagttaaag
gtgtagttaaaggtgaagtacactcttcctgatctttcctgccttgctga
ccaatggagggtggccatgtctgggactagagagaccatctagggtcaga
tgtatgaaggccatctatcatgaatgggagatcagaaaacctgaagaagt
gtacattcccttaggaaaaattttaaaggatttcaccctaaatctatata
ccaactgtgaattttgaacaagaaaaaccatttgtagtttagtggagtac
taaaatttgagttttataataccataataaagtgtcaatttattctaatt
gagaataaggtattctcttctatttggtatgtctgaaggatcctcaaata
agaagtagcatctccctagaacctaagtgtttctggtttgccctcctcgt
tcctcctcctcctcctggcctaaagaatgcttagagaaaattggtaacga
gtattcactctaaggaacaatgtgtctttgtactgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73278263_73279366
seq2: B6Ng01-280P12.b_48_1167 (reverse)

seq1  GGGAGA------GAAAGAGGAGAAGGAAAA----GGAGAGGAGCCGAAGG  40
      ||||||      |||||||||||| || ||    | ||     | | | |
seq2  GGGAGATGGAAGGAAAGAGGAGAATGATAATGTTGAAGTATGTCTGTATG  50

seq1  G--AGGGGAAGGAAGGGGAAGGGATGGGAAGGGGACCCTTATTCCACA--  86
      |   | ||||||||||||||||||  ||||||||| |||  | |||||  
seq2  GTATGTGGAAGGAAGGGGAAGGGAATGGAAGGGGAACCTATTCCCACAAC  100

seq1  CTTTCATAATCAGACTTAGCTGGAAACCAGGCACT-CAGAATATGGAAAA  135
      ||||||||||||||||||||||||||||||||||| ||||   |||||||
seq2  CTTTCATAATCAGACTTAGCTGGAAACCAGGCACTCCAGATATTGGAAAA  150

seq1  TGTAGCTCACAAGGGAATTCATTAGGA-GACAGAGAATAAACCATGACCA  184
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTAGCTCACAAGGGAATTCATTAGGAGGACAGAGAATAAACCATGACCA  200

seq1  CATAGGGTGGAGAAAGCATTCACCTCACCTGGAAGAGCACTGTGGTATTT  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGTGGAGAAAGCATTCACCTCACCTGGAAGAGCACTGTGGTATTT  250

seq1  AAAGACAAGATCTGAGAAGGGATTGATTGCATGGCCTAAGTTAAAGCACA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGATCTGAGAAGGGATTGATTGCATGGCCTAAGTTAAAGCACA  300

seq1  GCTGTCTGGAAGACACTAATCATATGAATCTCCTGTTGCTGCTGTAACAA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGGAAGACACTAATCATATGAATCTCCTGTTGCTGCTGTAACAA  350

seq1  ATGCAACTTTAACACAGCACAGATTTCCATTACAGTTCTGGAGGTTTTAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTTTAACACAGCACAGATTTCCATTACAGTTCTGGAGGTTTTAG  400

seq1  AAGTCTAAAATCCATTTCACTAACCTAAAGTCAGGGTCACCCAGGCTGGC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAAATCCATTTCACTAACCTAAAGTCAGGGTCACCCAGGCTGGC  450

seq1  TCCTTCTACAGCTTCAGAAGAAAGCTGCTGTTTATTTTGAAACCTTCAGC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTACAGCTTCAGAAGAAAGCTGCTGTTTATTTTGAAACCTTCAGC  500

seq1  CTCTAGAGGCCACCTGCACTGTTTGGCTGTAACCCCCTTCCTCTAACCAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGCCACCTGCACTGTTTGGCTGTAACCCCCTTCCTCTAACCAT  550

seq1  TCCAGTCTCAGGCATCTATTGCTGTATCTCCTTCAGTTACAACCTTCTGC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCAGGCATCTATTGCTGTATCTCCTTCAGTTACAACCTTCTGC  600

seq1  CTCCTGATATAAGAACTCGTCATAATTACATTGATCCCATCAGGATGACT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATATAAGAACTCGTCATAATTACATTGATCCCATCAGGATGACT  650

seq1  TATGTTATCTCCATTTCAAGATAATGCATGTTATCACAACTACAAAGCAT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATCTCCATTTCAAGATAATGCATGTTATCACAACTACAAAGCAT  700

seq1  TCTTTGCCATGTAGGGTAGCATATTCTCAGGATTCCCATAGTAGGACACG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCATGTAGGGTAGCATATTCTCAGGATTCCCATAGTAGGACACG  750

seq1  AGGATCTTTGGAGTGTTAATTATTCAGCATACCAACCCTTGGGGTGGAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTGGAGTGTTAATTATTCAGCATACCAACCCTTGGGGTGGAGA  800

seq1  CCATTGCACGGGATTGTTGGAACTGGAAGTAAGCAACTAATTTACAGTGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCACGGGATTGTTGGAACTGGAAGTAAGCAACTAATTTACAGTGT  850

seq1  ATTCTGAGATCCAATTTGTAAAATGGGATGCTACACTTTACATGAGCACT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGATCCAATTTGTAAAATGGGATGCTACACTTTACATGAGCACT  900

seq1  GACAGATCAAGAGGGTCCTTGATTCTCATTCTAAGAGGTAGGTATATAGA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCAAGAGGGTCCTTGATTCTCATTCTAAGAGGTAGGTATATAGA  950

seq1  ACACACATGACCTTGGATCTGAGTTTGACTGGATTCTCAGCCCAAGCTCA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGACCTTGGATCTGAGTTTGACTGGATTCTCAGCCCAAGCTCA  1000

seq1  GCATGAGAATTCAGGCAAAGATGCTCCTATTTGCTGCATGCTGCAGGACT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGAATTCAGGCAAAGATGCTCCTATTTGCTGCATGCTGCAGGACT  1050

seq1  CTTTGTCAGCTACAGAGTTTTAACCACTTCATCTGAAAAGATGCAAGATG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAGCTACAGAGTTTTAACCACTTCATCTGAAAAGATGCAAGATG  1100

seq1  TGAAGAATTTTACTGAATTC  1104
      ||||||||||||||||||||
seq2  TGAAGAATTTTACTGAATTC  1120

seq1: chr14_73140544_73141583
seq2: B6Ng01-280P12.g_69_1106

seq1  GAATTCTCACAAACCAAACACGCTCATTAACAAGAGCAATTTGAGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAAACCAAACACGCTCATTAACAAGAGCAATTTGAGAAACA  50

seq1  CTTCTCTCAATGTTTGCTTTTACAGTTTAGTTTTCAGGGACCATTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCAATGTTTGCTTTTACAGTTTAGTTTTCAGGGACCATTCTCTG  100

seq1  ATTCACTGAATCAGAAACTCAAGAGCTGGAAGCTCATGCCACGTGTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGAATCAGAAACTCAAGAGCTGGAAGCTCATGCCACGTGTTTAC  150

seq1  GTAAATTCCCCCAGCAAGCCTTTTGCACCCACGCAGGCAACCTGTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCCCCCAGCAAGCCTTTTGCACCCACGCAGGCAACCTGTTTTAT  200

seq1  TTGTAAACTCTGCTCAGCTCACAGGACTCATGGCTTGGGTAGGGTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTCTGCTCAGCTCACAGGACTCATGGCTTGGGTAGGGTGAGAC  250

seq1  ACTAGGGAAAGTCTCAGTCTGGGAGGAAGGTGGACTAAGGTATTGCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAAAGTCTCAGTCTGGGAGGAAGGTGGACTAAGGTATTGCCCTT  300

seq1  TTTAGAGAAATGTTCTAACAGTAGTTTGAGAAGGGACAGATGGCAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAAATGTTCTAACAGTAGTTTGAGAAGGGACAGATGGCAATCCC  350

seq1  CCTCTAGTTGCCACTTAGCCTTCATTTCTCTTTTACTGTTTTCTCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGTTGCCACTTAGCCTTCATTTCTCTTTTACTGTTTTCTCACTTG  400

seq1  GTAATAGAACCCCAGTTTCAGCGAAGTAAATAGTCACCAAGCACACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAACCCCAGTTTCAGCGAAGTAAATAGTCACCAAGCACACACAT  450

seq1  ATATGGCCTCATTTGAGGTCAAATGTGACTGTGAAACTAACTTTTAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCTCATTTGAGGTCAAATGTGACTGTGAAACTAACTTTTAGCCA  500

seq1  TTCAGGCTTTCCGTGGAAATGTCATGTGTGAACTGGAAAAGTAGTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTTTCCGTGGAAATGTCATGTGTGAACTGGAAAAGTAGTTAAAG  550

seq1  GTGTAGTTAAAGGTGAAGTACACTCTTCCTGATCTTTCCTGCCTTGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTAAAGGTGAAGTACACTCTTCCTGATCTTTCCTGCCTTGCTGA  600

seq1  CCAATGGAGGGTGGCCATGTCTGGGACTAGAGAGACCATCTAGGGTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGAGGGTGGCCATGTCTGGGACTAGAGAGACCATCTAGGGTCAGA  650

seq1  TGTATGAAGGCCATCTATCATGAATGGGAGATCAGAAAACCTGAAGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAAGGCCATCTATCATGAATGGGAGATCAGAAAACCTGAAGAAGT  700

seq1  GTACATT-CCTTAGGAAAAATTTT-AAGGATTTCACCCTAAATCTATAAT  748
      ||||||| |||||||||||||||| |||||||||||||||||||||| ||
seq2  GTACATTCCCTTAGGAAAAATTTTAAAGGATTTCACCCTAAATCTAT-AT  749

seq1  ACCAACTGTGAATTTTGAACA--GAAAACCATTTGTAGTTTAGT-GAGTA  795
      |||||||||||||||||||||   |||||||||||||||||||| |||||
seq2  ACCAACTGTGAATTTTGAACAAGAAAAACCATTTGTAGTTTAGTGGAGTA  799

seq1  CTAAAATTTGAGTTTTATAATACCATATAAAAGTGTCAATATA-TCTAAT  844
      |||||||||||||||||||||||||||  ||||||||||| || ||||||
seq2  CTAAAATTTGAGTTTTATAATACCATAATAAAGTGTCAATTTATTCTAAT  849

seq1  TGAGATAAAGGTATCCTCTTCTATTTGGGTATGTCTGAAGGAT-CTC-AA  892
      |||||  ||||||| ||||||||||| |||||||||||||||| ||| ||
seq2  TGAGAATAAGGTATTCTCTTCTATTT-GGTATGTCTGAAGGATCCTCAAA  898

seq1  TTAGAAGTAGCCATCTCCCTAGAA-CTTAGTG-TTCTGGTTTGCCCTCCT  940
      | |||||||| ||||||||||||| || |||| |||||||||||||||||
seq2  TAAGAAGTAG-CATCTCCCTAGAACCTAAGTGTTTCTGGTTTGCCCTCCT  947

seq1  CCTTTTCCTCCTCCTCCTCCTTGGCTAAAGAAATGCTTAAGAGAAAATTT  990
      |   ||||||||||||||||| | |||||| ||||||| ||||||||  |
seq2  C--GTTCCTCCTCCTCCTCCTGGCCTAAAG-AATGCTT-AGAGAAAA--T  991

seq1  TGGTTACGATAATCAACTCTTAAGGAAAACAAATGTG-CTTTGTACTGTA  1039
      |||| ||||  ||  |||| |||||||    |||||| ||||||||||||
seq2  TGGTAACGAGTATTCACTC-TAAGGAA---CAATGTGTCTTTGTACTGTA  1037

seq1  G  1040
      |
seq2  G  1038