BAC Information

Click to search

BAC

Clone NameB6Ng01-281M19
Chromosome14 (Build37)
Map Location 109,768,967 - 109,951,409
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M19.bB6Ng01-281M19.g
ACCGA081182GA081183
length1,1421,037
definitionB6Ng01-281M19.b B6Ng01-281M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,950,276 - 109,951,409)(109,768,967 - 109,769,997)
sequence
gaattcacactatcacgagtggagcatctgcagtccaagcacttataaag
ataaggcagaagactgagagatgacatattacggacatttgaaatcatgg
tttgcagggggatgctaatacaatgagctctggaataatttcaaatgata
cgttttattataaaaacatgaaaaggaaaggttaataaatttttgcaata
aaactaattatcatccctgtaagcatacactatttcttcatttaaatttt
acatatttaattagatggcccattaaatgcaaattttcacttgtaaaaat
caaaaaagagttagtgacttaatcattttgttatactgcactgtcacata
aaaatttaagaaagaaagacactctgccttgtattctctaggttttgatt
ttcctttaagcctaaggtgaaaatactttttccttgtgtggaagtaaaca
taaaattcatgttttttctctcaaataaactaaatactagttgatgttta
atcatattgccttatgcaacacagatcaacaaaggcattggatctctgta
actggagttatatgcagttgtgatgcagtagaagtgggtgcttagaatct
agccccaaggccctcttcaagagcagaaaaatgctccttattataaagcc
tgcttttagcatgattttaaacagaataagttttgatataatttatttta
ttgagagagatatatatccaatatatcagtactaagctgtagttgagatt
ttctttaaattctcacgaggcatgaattggtgttttcccttgactttatg
tgctaccaatttgacttagagatgttaaaattcgagccacacattcacag
ttggctatcttcagagagcattttgtcttattttctcctgtgtcaggcta
tgatcacaccactctgaaattcttcaagttacggatcatctgcctcatct
ttgggagactattttaccatcaaacaacagttcaccagctgtgtcaaagt
ccaagcttactggctgcgaatcggagggagaattgtatttccttctaaca
gagggcccatttccctcatttattatttttatacttggacacccatagcc
aaactggcccagtggggttggtgcaattcgcaaacaccggcc

gaattcttctggacctggctatcctgagtttacaaagataaaaatcacca
caggcttcttcaagcttcttgaagaagatgtcttctacagccttggtgtt
ggctcaggcactaaaggttttatgatctcacctcttgtaaagtgattaat
aatttccaatattttgaattggatatatatatatatatatatgttcattg
tttatgttgaattaaaaatattctataatgttaaaaaaaagagcaacata
ccatgatcaaaatgtggagaaaaggtcttctaaatcaactgagcagagct
catatggattcacagagactaaagaaagtacaggccctgcatgaatctgc
accaggtcccttgcgtatatattatagctttcagattagaatttttatgg
aactcatgagtcgtttgaaaattaatgggcctattctgccttctcttagg
tctttttccttctggtgatttgcattgttggaccttgatgttaacggttt
tgttttatcttattatatttaatactgttacattttgttggtatgtttta
gaagcccattcctttctaatgaggcaccgaagggaattggatctcgatgt
aatgggagttgtgaaggaaatgggaggaacagaagaaataactcaaatca
ggatatactgtaggaaaaaaaaaaacttttagtaaatggaaaaaataaat
atactttcaattattcacttctcaataaatgtactgtactgtattaatat
gagggaggagttggaattaaccaactggtgatatttatctgaataattgt
ttactggtagattatatgaaggaggagatttttatgagggctaaaaggag
cttttctctgcttttttctacagaacaaataactaaaaactgacattttg
aacaagttattataacccaaaattaattgcaacagccaaggcatctaggt
actttaaagaatagaacacttaagaagggtaatgtttagtgaggaatgat
atactaaactatattcatagctgaggtgtaagagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109950276_109951409
seq2: B6Ng01-281M19.b_50_1191 (reverse)

seq1  GGCC-GTGTCTGCGAA-TGCAC--AACCCACT-GGCCAGTTT-GCTAT-G  43
      |||| |||| |||||| |||||  | |||||| ||||||||| ||||| |
seq2  GGCCGGTGTTTGCGAATTGCACCAACCCCACTGGGCCAGTTTGGCTATGG  50

seq1  GTGTCCAGTAATAAAAATAATAAAATGAGGGAAATGGCCCCTCTGTTAGA  93
      |||||||   ||||||||||| ||||||||||||||| ||||||||||||
seq2  GTGTCCAAGTATAAAAATAAT-AAATGAGGGAAATGGGCCCTCTGTTAGA  99

seq1  AGGAAATACAATTCT-CCTCCGATTCGCAGCCAGTAAGCTTGGACTTTGA  142
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGAAATACAATTCTCCCTCCGATTCGCAGCCAGTAAGCTTGGACTTTGA  149

seq1  CACAGCTGGTGAACTG-TGTTTGATGGTAAAATAGTCTCCCAAAGATGAG  191
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACAGCTGGTGAACTGTTGTTTGATGGTAAAATAGTCTCCCAAAGATGAG  199

seq1  GCAGATGATCCGTAACTTGAAGAATTTCAGAGTGGTGTGATCATAGCCTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGATCCGTAACTTGAAGAATTTCAGAGTGGTGTGATCATAGCCTG  249

seq1  ACACAGGAGAAAATAAGACAAAATGCTCTCTGAAGATAGCCAACTGTGAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGAAAATAAGACAAAATGCTCTCTGAAGATAGCCAACTGTGAA  299

seq1  TGTGTGGCTCGAATTTTAACATCTCTAAGTCAAATTGGTAGCACATAAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTCGAATTTTAACATCTCTAAGTCAAATTGGTAGCACATAAAG  349

seq1  TCAAGGGAAAACACCAATTCATGCCTCGTGAGAATTTAAAGAAAATCTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAAAACACCAATTCATGCCTCGTGAGAATTTAAAGAAAATCTCA  399

seq1  ACTACAGCTTAGTACTGATATATTGGATATATATCTCTCTCAATAAAATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCTTAGTACTGATATATTGGATATATATCTCTCTCAATAAAATA  449

seq1  AATTATATCAAAACTTATTCTGTTTAAAATCATGCTAAAAGCAGGCTTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATCAAAACTTATTCTGTTTAAAATCATGCTAAAAGCAGGCTTTA  499

seq1  TAATAAGGAGCATTTTTCTGCTCTTGAAGAGGGCCTTGGGGCTAGATTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGAGCATTTTTCTGCTCTTGAAGAGGGCCTTGGGGCTAGATTCT  549

seq1  AAGCACCCACTTCTACTGCATCACAACTGCATATAACTCCAGTTACAGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCACTTCTACTGCATCACAACTGCATATAACTCCAGTTACAGAG  599

seq1  ATCCAATGCCTTTGTTGATCTGTGTTGCATAAGGCAATATGATTAAACAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGCCTTTGTTGATCTGTGTTGCATAAGGCAATATGATTAAACAT  649

seq1  CAACTAGTATTTAGTTTATTTGAGAGAAAAAACATGAATTTTATGTTTAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTATTTAGTTTATTTGAGAGAAAAAACATGAATTTTATGTTTAC  699

seq1  TTCCACACAAGGAAAAAGTATTTTCACCTTAGGCTTAAAGGAAAATCAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACAAGGAAAAAGTATTTTCACCTTAGGCTTAAAGGAAAATCAAA  749

seq1  ACCTAGAGAATACAAGGCAGAGTGTCTTTCTTTCTTAAATTTTTATGTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGAATACAAGGCAGAGTGTCTTTCTTTCTTAAATTTTTATGTGA  799

seq1  CAGTGCAGTATAACAAAATGATTAAGTCACTAACTCTTTTTTGATTTTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTATAACAAAATGATTAAGTCACTAACTCTTTTTTGATTTTTA  849

seq1  CAAGTGAAAATTTGCATTTAATGGGCCATCTAATTAAATATGTAAAATTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAAATTTGCATTTAATGGGCCATCTAATTAAATATGTAAAATTT  899

seq1  AAATGAAGAAATAGTGTATGCTTACAGGGATGATAATTAGTTTTATTGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAATAGTGTATGCTTACAGGGATGATAATTAGTTTTATTGCA  949

seq1  AAAATTTATTAACCTTTCCTTTTCATGTTTTTATAATAAAACGTATCATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTAACCTTTCCTTTTCATGTTTTTATAATAAAACGTATCATT  999

seq1  TGAAATTATTCCAGAGCTCATTGTATTAGCATCCCCCTGCAAACCATGAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTCCAGAGCTCATTGTATTAGCATCCCCCTGCAAACCATGAT  1049

seq1  TTCAAATGTCCGTAATATGTCATCTCTCAGTCTTCTGCCTTATCTTTATA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTCCGTAATATGTCATCTCTCAGTCTTCTGCCTTATCTTTATA  1099

seq1  AGTGCTTGGACTGCAGATGCTCCACTCGTGATAGTGTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGACTGCAGATGCTCCACTCGTGATAGTGTGAATTC  1142


seq1: chr14_109768967_109769997
seq2: B6Ng01-281M19.g_69_1105

seq1  GAATTCTTCTGGACCTGGCTATCCTGAGTTTACAAAGATAAAAATCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGACCTGGCTATCCTGAGTTTACAAAGATAAAAATCACCA  50

seq1  CAGGCTTCTTCAAGCTTCTTGAAGAAGATGTCTTCTACAGCCTTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTTCAAGCTTCTTGAAGAAGATGTCTTCTACAGCCTTGGTGTT  100

seq1  GGCTCAGGCACTAAAGGTTTTATGATCTCACCTCTTGTAAAGTGATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGCACTAAAGGTTTTATGATCTCACCTCTTGTAAAGTGATTAAT  150

seq1  AATTTCCAATATTTTGAATTGGATATATATATATATATATATGTTCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAATATTTTGAATTGGATATATATATATATATATATGTTCATTG  200

seq1  TTTATGTTGAATTAAAAATATTCTATAATGTTAAAAAAAAGAGCAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTGAATTAAAAATATTCTATAATGTTAAAAAAAAGAGCAACATA  250

seq1  CCATGATCAAAATGTGGAGAAAAGGTCTTCTAAATCAACTGAGCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATCAAAATGTGGAGAAAAGGTCTTCTAAATCAACTGAGCAGAGCT  300

seq1  CATATGGATTCACAGAGACTAAAGAAAGTACAGGCCCTGCATGAATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGATTCACAGAGACTAAAGAAAGTACAGGCCCTGCATGAATCTGC  350

seq1  ACCAGGTCCCTTGCGTATATATTATAGCTTTCAGATTAGAATTTTTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCCCTTGCGTATATATTATAGCTTTCAGATTAGAATTTTTATGG  400

seq1  AACTCATGAGTCGTTTGAAAATTAATGGGCCTATTCTGCCTTCTCTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGAGTCGTTTGAAAATTAATGGGCCTATTCTGCCTTCTCTTAGG  450

seq1  TCTTTTTCCTTCTGGTGATTTGCATTGTTGGACCTTGATGTTAACGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTTCTGGTGATTTGCATTGTTGGACCTTGATGTTAACGGTTT  500

seq1  TGTTTTATCTTATTATATTTAATACTGTTACATTTTGTTGGTATGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCTTATTATATTTAATACTGTTACATTTTGTTGGTATGTTTTA  550

seq1  GAAGCCCATTCCTTTCTAATGAGGCACCGAAGGGAATTGGATCTCGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCATTCCTTTCTAATGAGGCACCGAAGGGAATTGGATCTCGATGT  600

seq1  AATGGGAGTTGTGAAGGAAATGGGAGGAACAGAAGAAATAACTCAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGTTGTGAAGGAAATGGGAGGAACAGAAGAAATAACTCAAATCA  650

seq1  GGATATACTGTAGGAAAAAAAAAAACTTTTAGTAAATGGAAAAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATACTGTAGGAAAAAAAAAAACTTTTAGTAAATGGAAAAAATAAAT  700

seq1  ATACTTTCAATTATTCACTTCTCAATAAATGTACTGTACTGTATTAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAATTATTCACTTCTCAATAAATGTACTGTACTGTATTAATAT  750

seq1  GAGGGAGGAGTTGGAATTAACCAACTGGTGATATTTATCTGAATAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAGTTGGAATTAACCAACTGGTGATATTTATCTGAATAATTGT  800

seq1  TTACTGGTAGATTATATGAA-GAGGAGATTTTTATGAGGGCTAAAA-GAG  848
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTACTGGTAGATTATATGAAGGAGGAGATTTTTATGAGGGCTAAAAGGAG  850

seq1  C-TTTCTCTGC-TTTTTCTACAGAAC-AATTACTAAAAACTGACA-TTTG  894
      | ||||||||| |||||||||||||| ||| |||||||||||||| ||||
seq2  CTTTTCTCTGCTTTTTTCTACAGAACAAATAACTAAAAACTGACATTTTG  900

seq1  AACAAGTTATTATAA-CCAAAATTAAATGCAACAGCCAAGGCATCTTAGG  943
      ||||||||||||||| |||||||||| |||||||||||||||||| ||||
seq2  AACAAGTTATTATAACCCAAAATTAATTGCAACAGCCAAGGCATC-TAGG  949

seq1  TTACTTAAAGAATAGAACACTTAAGAAGGGTAATGTTTAGTGAGGAATGA  993
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAAGAATAGAACACTTAAGAAGGGTAATGTTTAGTGAGGAATGA  999

seq1  TATATAAAAGTATATTCATAGCTGAGGTGTAAGAGTGG  1031
      ||||  ||| ||||||||||||||||||||||||||||
seq2  TATACTAAACTATATTCATAGCTGAGGTGTAAGAGTGG  1037


| Home | SequenceCutter | Blast | Download |