BAC Information

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BAC

Clone NameB6Ng01-283I11
Chromosome14 (Build37)
Map Location 84,623,693 - 84,738,560
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283I11.bB6Ng01-283I11.g
ACCGA082467GA082468
length1,1291,132
definitionB6Ng01-283I11.b B6Ng01-283I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,737,408 - 84,738,560)(84,623,693 - 84,624,829)
sequence
gaattctatgtcagttttctagggcctgactctagcaagtgtgtgctgta
tattatttagagtgtaatgagaaaacttcagaaggcttcaatagacaaac
tacctagtgcttgacacaccatgagctggaaactgacaccagctcccccc
tacagcctcttatcatcatttttgtcttcctcattttgatcagaacattt
gtggtcacttatattcataaatagattactctggacaatcatattcccac
attcacaaagaaacctagcagtatcacaataagcagaaaaaataagtact
gttctgaaagtttcttttatttttaaaaaaacaagaaagcatggatttca
cagtagatattttatgaatcactgatgggccaaatatacttcatatttcc
atcagttagctttgtataagtatttttagccctcacacagatttcctatt
ctaacgtcagaattcattcccatcttcaaaatagctttgtgagaaagttt
gacaagattatatctaattattgttctgcaaaaactggcaccaggcagga
aaaaaatttttttcttcagaaaatttaaagaataaatgagagaacataca
ttgtaaaaaaaaaaagtcatttgtaaaatcaagaacaacaatatagccac
aaagaaaactatttagattcaagaaacaactgtgaaagccactacaagaa
ctctccaatatgcttgctttatatataaaaaaaaaaactatttatgtttt
tctctaacaacaaaagaagcatcattaattttatgataggtctgagagct
taggtggcagataacttcttacacttttaatgtaagttgcattgtcacat
ctgagtgttaaaaggaatatgtaatttttctgaagccgctgttctcaacc
tgtgggttgcaacccttttgggggtcagttgaccctttcagaggggtcac
ctaagactatgagaaatcaaaatatctacatataatgcaaacaagcaaac
tggtgtgaaatagcacaaaaatatattattgatggtattacacagcatca
gcaaatctaagggtcacagcaatagaagataagaccacgtgagagatgaa
tcatgattgacaaatgagcgtatcaatca

gaattctcctgagatcctgacagtggtggctgttgtggacacttaggtac
agggataggttaggaggggatgctcagctgttctataataggggggaaag
caaaacagtctatgagcatctgtttagtcccctcggaatgaagtcagagg
gtgaggagaagctacatcaggtgtctctgttggacttggggatgagacta
ggggatctgtcatagaggagaggaaagaaagcaatcatctgaagctagcc
ttcctgttttgttagcctacttgcttcttagtcaggcttgattggtgatt
tcccacaggaaccctgctggagcttggggctgtcatgaaaggatgactgt
ggaggaaggttcgagatctgatagatctgctagttttctaaaatatatgc
atacatacatatatgtgtgtgtgtgggtccatgtataattctcttgttta
tctacaactgttttgtttcttcccttgcttgtatcagattgggttttcag
cagctaaagctgccagggaactgttgctaaaactaaggatgacattgaaa
tttctctacctgcccattgctcagattatttgcaggcactataatgaaat
ttgtgctgtgatgtgatgagagaaactcgagacttcatgtgtgctaatca
aacattttactaattgaaatacttctctaaccctaaaatgaacagttttg
aaaaaattaaatttcttctatgaggaaatgaaacttagttcataataatc
ctgaaaattcaaactcctcattactatacatatttttaataagcacaaat
gaataacaggtttatttgtcctctataaagtattctcctgtgtagtaacc
actaattaactctcccaatacataactaggaaatacaattttctatctct
tattctttgtgatataatgatgttataagcataattttatactgtactta
tttaagatccatcagtgcatgatattgtttataatattaataattagatg
gcattttgtgtacatttcttttgagacttttcccttctatggataaagct
gggataaaataaatgagaacattcaacttacaggtacttaataataagtt
tatagtttctagtattagtttggaatcttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84737408_84738560
seq2: B6Ng01-283I11.b_43_1171 (reverse)

seq1  TGATTGATAGTGTTTTATTTTGTCAATCCATGAAATCAATCTCTTCAACC  50
      |||||||||      |  ||||||||| ||||  ||  ||||| |||  |
seq2  TGATTGATA---CGCTCATTTGTCAAT-CATG--ATTCATCTC-TCA--C  41

seq1  GTGGTTCTTATCCTTTCTAATGCTGTGACCCTTTAAGATTTTCCCTGATG  100
      |||| |||||||  ||||| |||||||||||||  ||||||   ||||||
seq2  GTGG-TCTTATC--TTCTATTGCTGTGACCCTT--AGATTT--GCTGATG  84

seq1  CTGTGGTAATTCCCATCAATAATATATTTTTGTTGCTATTTCACAACCAG  150
      |||| |||| | |||||||||||||||||||| ||||||||||| |||||
seq2  CTGT-GTAA-TACCATCAATAATATATTTTTG-TGCTATTTCAC-ACCAG  130

seq1  TTTTGCTTTGTTTTGCATTATATTGTAGATATTTTTGATTTCTCATAGTC  200
       |||||||   ||||||||||| |||||||| ||||||||||||||||||
seq2  -TTTGCTT--GTTTGCATTATA-TGTAGATA-TTTTGATTTCTCATAGTC  175

seq1  TTAGGTGACCCCTCTGAAAGGGTCAACTGACCCCC-AAAGGGTTGCAACC  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAGGTGACCCCTCTGAAAGGGTCAACTGACCCCCAAAAGGGTTGCAACC  225

seq1  CACAGGTTGAGAACAGCGGCTTCAGAAAAATTACATATTCCTTTTAACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTGAGAACAGCGGCTTCAGAAAAATTACATATTCCTTTTAACAC  275

seq1  TCAGATGTGACAATGCAACTTACATTAAAAGTGTAAGAAGTTATCTGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTGACAATGCAACTTACATTAAAAGTGTAAGAAGTTATCTGCCA  325

seq1  CCTAAGCTCTCAGACCTATCATAAAATTAATGATGCTTCTTTTGTTGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTCTCAGACCTATCATAAAATTAATGATGCTTCTTTTGTTGTTA  375

seq1  GAGAAAAACATAAATAGTTTTTTTTTTTATATATAAAGCAAGCATATTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACATAAATAGTTTTTTTTTTTATATATAAAGCAAGCATATTGG  425

seq1  AGAGTTCTTGTAGTGGCTTTCACAGTTGTTTCTTGAATCTAAATAGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTTGTAGTGGCTTTCACAGTTGTTTCTTGAATCTAAATAGTTTT  475

seq1  CTTTGTGGCTATATTGTTGTTCTTGATTTTACAAATGACTTTTTTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGCTATATTGTTGTTCTTGATTTTACAAATGACTTTTTTTTTTT  525

seq1  ACAATGTATGTTCTCTCATTTATTCTTTAAATTTTCTGAAGAAAAAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTATGTTCTCTCATTTATTCTTTAAATTTTCTGAAGAAAAAAATT  575

seq1  TTTTTCCTGCCTGGTGCCAGTTTTTGCAGAACAATAATTAGATATAATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGCCTGGTGCCAGTTTTTGCAGAACAATAATTAGATATAATCT  625

seq1  TGTCAAACTTTCTCACAAAGCTATTTTGAAGATGGGAATGAATTCTGACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACTTTCTCACAAAGCTATTTTGAAGATGGGAATGAATTCTGACG  675

seq1  TTAGAATAGGAAATCTGTGTGAGGGCTAAAAATACTTATACAAAGCTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATAGGAAATCTGTGTGAGGGCTAAAAATACTTATACAAAGCTAAC  725

seq1  TGATGGAAATATGAAGTATATTTGGCCCATCAGTGATTCATAAAATATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAATATGAAGTATATTTGGCCCATCAGTGATTCATAAAATATCT  775

seq1  ACTGTGAAATCCATGCTTTCTTGTTTTTTTAAAAATAAAAGAAACTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAATCCATGCTTTCTTGTTTTTTTAAAAATAAAAGAAACTTTCA  825

seq1  GAACAGTACTTATTTTTTCTGCTTATTGTGATACTGCTAGGTTTCTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTACTTATTTTTTCTGCTTATTGTGATACTGCTAGGTTTCTTTGT  875

seq1  GAATGTGGGAATATGATTGTCCAGAGTAATCTATTTATGAATATAAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGAATATGATTGTCCAGAGTAATCTATTTATGAATATAAGTGA  925

seq1  CCACAAATGTTCTGATCAAAATGAGGAAGACAAAAATGATGATAAGAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATGTTCTGATCAAAATGAGGAAGACAAAAATGATGATAAGAGGC  975

seq1  TGTAGGGGGGAGCTGGTGTCAGTTTCCAGCTCATGGTGTGTCAAGCACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGGGAGCTGGTGTCAGTTTCCAGCTCATGGTGTGTCAAGCACTA  1025

seq1  GGTAGTTTGTCTATTGAAGCCTTCTGAAGTTTTCTCATTACACTCTAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTGTCTATTGAAGCCTTCTGAAGTTTTCTCATTACACTCTAAAT  1075

seq1  AATATACAGCACACACTTGCTAGAGTCAGGCCCTAGAAAACTGACATAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGCACACACTTGCTAGAGTCAGGCCCTAGAAAACTGACATAGA  1125

seq1  ATTC  1153
      ||||
seq2  ATTC  1129


seq1: chr14_84623693_84624829
seq2: B6Ng01-283I11.g_64_1195

seq1  GAATTCTCCTGAGATCCTGACAGTGGTGGCTGTTGTGGACACTTAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAGATCCTGACAGTGGTGGCTGTTGTGGACACTTAGGTAC  50

seq1  AGGGATAGGTTAGGAGGGGATGCTCAGCTGTTCTATAATAGGGGGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGGTTAGGAGGGGATGCTCAGCTGTTCTATAATAGGGGGGAAAG  100

seq1  CAAAACAGTCTATGAGCATCTGTTTAGTCCCCTCGGAATGAAGTCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGTCTATGAGCATCTGTTTAGTCCCCTCGGAATGAAGTCAGAGG  150

seq1  GTGAGGAGAAGCTACATCAGGTGTCTCTGTTGGACTTGGGGATGAGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGAAGCTACATCAGGTGTCTCTGTTGGACTTGGGGATGAGACTA  200

seq1  GGGGATCTGTCATAGAGGAGAGGAAAGAAAGCAATCATCTGAAGCTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCTGTCATAGAGGAGAGGAAAGAAAGCAATCATCTGAAGCTAGCC  250

seq1  TTCCTGTTTTGTTAGCCTACTTGCTTCTTAGTCAGGCTTGATTGGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTGTTAGCCTACTTGCTTCTTAGTCAGGCTTGATTGGTGATT  300

seq1  TCCCACAGGAACCCTGCTGGAGCTTGGGGCTGTCATGAAAGGATGACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGGAACCCTGCTGGAGCTTGGGGCTGTCATGAAAGGATGACTGT  350

seq1  GGAGGAAGGTTCGAGATCTGATAGATCTGCTAGTTTTCTAAAATATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGTTCGAGATCTGATAGATCTGCTAGTTTTCTAAAATATATGC  400

seq1  ATACATACATATATGTGTGTGTGTGGGTCCATGTATAATTCTCTTGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATATATGTGTGTGTGTGGGTCCATGTATAATTCTCTTGTTTA  450

seq1  TCTACAACTGTTTTGTTTCTTCCCTTGCTTGTATCAGATTGGGTTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACTGTTTTGTTTCTTCCCTTGCTTGTATCAGATTGGGTTTTCAG  500

seq1  CAGCTAAAGCTGCCAGGGAACTGTTGCTAAAACTAAGGATGACATTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAGCTGCCAGGGAACTGTTGCTAAAACTAAGGATGACATTGAAA  550

seq1  TTTCTCTACCTGCCCATTGCTCAGATTATTTGCAGGCACTATAATGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTACCTGCCCATTGCTCAGATTATTTGCAGGCACTATAATGAAAT  600

seq1  TTGTGCTGTGATGTGATGAGAGAAACTCGAGACTTCATGTGTGCTAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTGTGATGTGATGAGAGAAACTCGAGACTTCATGTGTGCTAATCA  650

seq1  AACATTTTACTAATTGAAATACTTCTCTAACCCTAAAATGAACAGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTACTAATTGAAATACTTCTCTAACCCTAAAATGAACAGTTTTG  700

seq1  AAAAAATTAAATTTCTTCTATGAGGAAATGAAACTTAGTTCATAATAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAATTTCTTCTATGAGGAAATGAAACTTAGTTCATAATAATC  750

seq1  CTGAAAATTCAAACTCCTCATTACTATACATATTTTTAATAAGCACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATTCAAACTCCTCATTACTATACATATTTTTAATAAGCACAAAT  800

seq1  GAATAACAGGTTTATTTGTCCTCTATAAAGTATTCTCCTGTGTAGTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAGGTTTATTTGTCCTCTATAAAGTATTCTCCTGTGTAGTAACC  850

seq1  ACTAATTAACTCTCCCAATACATAACTAGGAAATACAAATTTTCTATCTC  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTAATTAACTCTCCCAATACATAACTAGGAAATAC-AATTTTCTATCTC  899

seq1  TTATTCTTTGTGATATAATGATGTTATAAGCATAATTTTATACTGTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTGTGATATAATGATGTTATAAGCATAATTTTATACTGTACTT  949

seq1  ATTAAAGATCCATCAGGTGCATGATATTGTTTATAATATT-ATAATTAGA  999
      ||| ||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ATTTAAGATCCATCA-GTGCATGATATTGTTTATAATATTAATAATTAGA  998

seq1  TGGCAATTTTGTGTACA-TTCTTTTGAAAAACTTTTCCC-TCTATGGATA  1047
      |||| |||||||||||| ||||||||  | ||||||||| ||||||||| 
seq2  TGGC-ATTTTGTGTACATTTCTTTTG--AGACTTTTCCCTTCTATGGAT-  1044

seq1  AAAGCTGGATAAAAATAAATAGAGAACAATACATTAACAGTTACCTAATA  1097
      ||||||||   ||||||||| ||||||| |  | | |||| ||| |||| 
seq2  AAAGCTGGGATAAAATAAAT-GAGAACATTCAACTTACAGGTACTTAAT-  1092

seq1  AATAAGTTTATAGTTTCTAAATATTTAGTTTG--ATCTTATG  1137
      |||||||||||||||||| | || ||||||||  ||||||||
seq2  AATAAGTTTATAGTTTCT-AGTA-TTAGTTTGGAATCTTATG  1132


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