BAC Information

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BAC

Clone NameB6Ng01-283O18
Chromosome14 (Build37)
Map Location 23,979,888 - 24,084,859
singlet/doubletdoublet
Overlap genenone
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneKcnma1, LOC620499, Dlg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283O18.bB6Ng01-283O18.g
ACCGA082755GA082756
length1,1191,120
definitionB6Ng01-283O18.b B6Ng01-283O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,083,767 - 24,084,859)(23,979,888 - 23,981,006)
sequence
gaattcctaagtatgggcctagaatttactagtctattgactttctatct
aaaccagaggtgtataaatcatggctgtggagtaactgtagtaggtctta
tttttgagatttattttaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtacacatgcatgcacttgagtccagttgtccatagagcccaga
agagaatttgtatcccctgtatctagagttacaggctattgtaagtcacc
tgacttggggctgggaactgaatttgggccctcgacaagagcagtttgct
ctctttcatgattgggccatctctttagccatctacatgtaactactctt
atatattgtgcattatctgtggctcttgaaaaaagacatgtggaatttgc
tttcgaaacatttatattttggctgaaggaaatgcaatatttaaacatta
cccagagccaagaatggttgtcatgactgttctgaacggaagagacagga
tggtcagtatcccaggacagaggggatttgtcgtagataaagctgtttta
gctgggaatcctgttattgaagataaaacattttaatataaaacatggaa
acaaaaaaagtatgaaatgatcctctcaaaaagaacaggcagagagcttt
ccaggaagtgtggaagtgtggcagtcatcctcgagctcccatgtgtgctg
aataaggacagttgtgcagaaataaatatgagtgtgcaaatttctctgtg
gcaaggttttaagtccttgggttataaaccaaggaatggtataccttggt
aggtattcagtattctaatttcttttccttttttcctcctctttttctct
tcctcctcttcttttctcctccttctttccttagaaacttctcacaggtg
ggctacaccacccataaaaatcccatcagaatttgaattaggctaccttt
taatccttcaggtccctaactaagaatttatgtgctaatttattttaatt
ttttcttgttaatcaattctggccagaatgtgagaattaaatcctcaaat
aggttttaaattttaaaaattcccgatttttttaaaagaattgttcccat
ccataaactatcctggttg
gaattcaaagtcagcatggggcagggggagtttaggtctagccccagact
ttgtaggaatggtaatttcagggcaggatcccacccaactatctcaaggt
ctgtgtctaacaaaggcaggcagatctttaaattcttttgtgatgttaaa
aaatgtgcttggtgtcttttttttttttttttttttaggaatcctggaac
ttgggttataggatgctgattcatgagataattaaaagggaaccccaagt
aattaccgaattaatatgtaaataaaagattggacttttgtctgcaagat
atgagctacccagagaatgtttagataagctgtctcaatcagaacagagg
aagagagcagtctgaaagctgactcaggcagaacataagccattagcttg
taacccacaacttgacttcaaattgttggtttagctgttctcaaacaccc
cttcctcagaaaccctctccaagccaagggtggtccttggcaatgtcctg
aggatatttcctctgcaaaacacagagctcttctgggtgtgtaaatagga
acttgctcactggttggatatttgattgaaacttgtagagactctctgct
ggtactcttcctgctcatctcttagtcccaccccaggccccatccttcct
caccttagctactacttggcttttgtttataagagagccctcttttggtg
cctgttttctacaacctctgtgttttctccaatcaccttgatgtggtcac
ttactttggaaataggacatatcttccaagcatctgagaaactgaagccc
ccatccattatcctttgcctagctgtcttccctgaaccagggctcctttc
tcactccagagcctatgtggctgcagaaataaaaaaagggtgaacattgt
cagctgtaggaaggtgcagcaagggaaggacagtccccaaaaggcctgac
accctctgactttcaagctccatctgtttggtttgggggaagaaaaaact
cagctagaagaaacagtgtatttcctttctcaaggtaataggctgatgtt
atgaacaatgaaaggaaagactactctgacaaccccctaaataaagctaa
ttcgttgtcatgcaacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24083767_24084859
seq2: B6Ng01-283O18.b_47_1165 (reverse)

seq1  CAACCAAGATATTTTAT-GAT-GGAACACTTCTTTT-TAAAAATCTGGAA  47
      |||||| |||| ||||| ||| |||||| |||||||  ||||||| ||||
seq2  CAACCAGGATAGTTTATGGATGGGAACAATTCTTTTAAAAAAATCGGGAA  50

seq1  -TTTTAAAATT--AAAACTATTTTGAGATTTAA---TCTCATTCTAGCCA  91
       ||||||||||  ||| ||||||   |||||||   || |||||| ||||
seq2  TTTTTAAAATTTAAAACCTATTTGAGGATTTAATTCTCACATTCTGGCCA  100

seq1  GAA-TGATTAACAAGAAAAAAT--AAATAAA-TAGCA-ATAAATTC-TAG  135
      ||| ||||||||||||||||||  ||||||| ||||| |||||||| |||
seq2  GAATTGATTAACAAGAAAAAATTAAAATAAATTAGCACATAAATTCTTAG  150

seq1  TTA-GGACCTG-AGGA-TAAAAGTAAGCCTTATTC-AATTCTGATGGGA-  180
      ||| ||||||| |||| ||||||  ||||| |||| ||||||||||||| 
seq2  TTAGGGACCTGAAGGATTAAAAGGTAGCCTAATTCAAATTCTGATGGGAT  200

seq1  TTTTAT-GGTGGTGTAGCC--ACTGTGAG-AGTTTCTAAAGAAAGAAGGA  226
      |||||| ||||||||||||   ||||||| ||||||||| ||||||||||
seq2  TTTTATGGGTGGTGTAGCCCACCTGTGAGAAGTTTCTAAGGAAAGAAGGA  250

seq1  GGAG-AAAGAAGAGGAGGAAGAGAAAAAGAGGAGGAAAAAAGG-AAAGAA  274
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGAAAAGAAGAGGAGGAAGAGAAAAAGAGGAGGAAAAAAGGAAAAGAA  300

seq1  ATTAGAATTACTGAATACCTACCAA-GTATACCATTCCTTGGTTTATAAC  323
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTAGAA-TACTGAATACCTACCAAGGTATACCATTCCTTGGTTTATAAC  349

seq1  CCAAGGACTTTAAACCTTGCCACAGAGAAATTTGCACACTCATATTTATT  373
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACTTAAAACCTTGCCACAGAGAAATTTGCACACTCATATTTATT  399

seq1  TCTGCACAACTGTCCTTATTCAGCACACATGGGAGCTCGAGGATGACTGC  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAACTGTCCTTATTCAGCACACATGGGAGCTCGAGGATGACTGC  449

seq1  CACACTTCCACACTTCCTGGAAAGCTCTCTGCCTGTTCTTTTTGAGAGGA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCACACTTCCTGGAAAGCTCTCTGCCTGTTCTTTTTGAGAGGA  499

seq1  TCATTTCATACTTTTTTTGTTTCCATGTTTTATATTAAAATGTTTTATCT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATACTTTTTTTGTTTCCATGTTTTATATTAAAATGTTTTATCT  549

seq1  TCAATAACAGGATTCCCAGCTAAAACAGCTTTATCTACGACAAATCCCCT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACAGGATTCCCAGCTAAAACAGCTTTATCTACGACAAATCCCCT  599

seq1  CTGTCCTGGGATACTGACCATCCTGTCTCTTCCGTTCAGAACAGTCATGA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGGATACTGACCATCCTGTCTCTTCCGTTCAGAACAGTCATGA  649

seq1  CAACCATTCTTGGCTCTGGGTAATGTTTAAATATTGCATTTCCTTCAGCC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTCTTGGCTCTGGGTAATGTTTAAATATTGCATTTCCTTCAGCC  699

seq1  AAAATATAAATGTTTCGAAAGCAAATTCCACATGTCTTTTTTCAAGAGCC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAATGTTTCGAAAGCAAATTCCACATGTCTTTTTTCAAGAGCC  749

seq1  ACAGATAATGCACAATATATAAGAGTAGTTACATGTAGATGGCTAAAGAG  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATGCACAATATATAAGAGTAGTTACATGTAGATGGCTAAAGAG  799

seq1  ATGGCCCAATCATGAAAGAGAGCAAACTGCTCTTGTCGAGGGCCCAAATT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCAATCATGAAAGAGAGCAAACTGCTCTTGTCGAGGGCCCAAATT  849

seq1  CAGTTCCCAGCCCCAAGTCAGGTGACTTACAATAGCCTGTAACTCTAGAT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAGCCCCAAGTCAGGTGACTTACAATAGCCTGTAACTCTAGAT  899

seq1  ACAGGGGATACAAATTCTCTTCTGGGCTCTATGGACAACTGGACTCAAGT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGATACAAATTCTCTTCTGGGCTCTATGGACAACTGGACTCAAGT  949

seq1  GCATGCATGTGTACACACACACACACACACACACACACACACACACACAC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGTGTACACACACACACACACACACACACACACACACACACAC  999

seq1  TTTAAAATAAATCTCAAAAATAAGACCTACTACAGTTACTCCACAGCCAT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAAATCTCAAAAATAAGACCTACTACAGTTACTCCACAGCCAT  1049

seq1  GATTTATACACCTCTGGTTTAGATAGAAAGTCAATAGACTAGTAAATTCT  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATACACCTCTGGTTTAGATAGAAAGTCAATAGACTAGTAAATTCT  1099

seq1  AGGCCCATACTTAGGAATTC  1093
      ||||||||||||||||||||
seq2  AGGCCCATACTTAGGAATTC  1119

seq1: chr14_23979888_23981006
seq2: B6Ng01-283O18.g_66_1185

seq1  GAATTCAAAGTCAGCATGGGGCAGGGGGAGTTTAGGTCTAGCCCCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCAGCATGGGGCAGGGGGAGTTTAGGTCTAGCCCCAGACT  50

seq1  TTGTAGGAATGGTAATTTCAGGGCAGGATCCCACCCAACTATCTCAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGAATGGTAATTTCAGGGCAGGATCCCACCCAACTATCTCAAGGT  100

seq1  CTGTGTCTAACAAAGGCAGGCAGATCTTTAAATTCTTTTGTGATGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTAACAAAGGCAGGCAGATCTTTAAATTCTTTTGTGATGTTAAA  150

seq1  AAATGTGCTTGGTGTCTTTTTTTTTTTTTTTTTTTTAGGAATCCTGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTTGGTGTCTTTTTTTTTTTTTTTTTTTTAGGAATCCTGGAAC  200

seq1  TTGGGTTATAGGATGCTGATTCATGAGATAATTAAAAGGGAACCCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTATAGGATGCTGATTCATGAGATAATTAAAAGGGAACCCCAAGT  250

seq1  AATTACCGAATTAATATGTAAATAAAAGATTGGACTTTTGTCTGCAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCGAATTAATATGTAAATAAAAGATTGGACTTTTGTCTGCAAGAT  300

seq1  ATGAGCTACCCAGAGAATGTTTAGATAAGCTGTCTCAATCAGAACAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTACCCAGAGAATGTTTAGATAAGCTGTCTCAATCAGAACAGAGG  350

seq1  AAGAGAGCAGTCTGAAAGCTGACTCAGGCAGAACATAAGCCATTAGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGTCTGAAAGCTGACTCAGGCAGAACATAAGCCATTAGCTTG  400

seq1  TAACCCACAACTTGACTTCAAATTGTTGGTTTAGCTGTTCTCAAACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACAACTTGACTTCAAATTGTTGGTTTAGCTGTTCTCAAACACCC  450

seq1  CTTCCTCAGAAACCCTCTCCAAGCCAAGGGTGGTCCTTGGCAATGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGAAACCCTCTCCAAGCCAAGGGTGGTCCTTGGCAATGTCCTG  500

seq1  AGGATATTTCCTCTGCAAAACACAGAGCTCTTCTGGGTGTGTAAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTCCTCTGCAAAACACAGAGCTCTTCTGGGTGTGTAAATAGGA  550

seq1  ACTTGCTCACTGGTTGGATATTTGATTGAAACTTGTAGAGACTCTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCACTGGTTGGATATTTGATTGAAACTTGTAGAGACTCTCTGCT  600

seq1  GGTACTCTTCCTGCTCATCTCTTAGTCCCACCCCAGGCCCCATCCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTTCCTGCTCATCTCTTAGTCCCACCCCAGGCCCCATCCTTCCT  650

seq1  CACCTTAGCTACTACTTGGCTTTTGTTTATAAGAGAGCCCTCTTTTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAGCTACTACTTGGCTTTTGTTTATAAGAGAGCCCTCTTTTGGTG  700

seq1  CCTGTTTTCTACAACCTCTGTGTTTTCTCCAATCACCTTGATGTGGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCTACAACCTCTGTGTTTTCTCCAATCACCTTGATGTGGTCAC  750

seq1  TTACTTTGG-AATAGGACATATCTTCCAAGCATCTGAGAAACTGAAGCCC  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGGAAATAGGACATATCTTCCAAGCATCTGAGAAACTGAAGCCC  800

seq1  CCATCCATTATCCTTTGCCTAGCTGTCTTCCCTGAACCAGGGCTCCTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATTATCCTTTGCCTAGCTGTCTTCCCTGAACCAGGGCTCCTTTC  850

seq1  TCACTCCAGAGCCTATGTGGCTGCAGAA--TAAAAAAGGGTGACATTTGT  897
      ||||||||||||||||||||||||||||   ||||||||||||   ||||
seq2  TCACTCCAGAGCCTATGTGGCTGCAGAAATAAAAAAAGGGTGAACATTGT  900

seq1  CAGCTGTAGGAA-GTGCAGC-AGGGAAGGACAGTCCCC-AAAGGCCTGAC  944
      |||||||||||| ||||||| ||||||||||||||||| |||||||||||
seq2  CAGCTGTAGGAAGGTGCAGCAAGGGAAGGACAGTCCCCAAAAGGCCTGAC  950

seq1  ACCCTCTGACTTTCAGGCTCCATCTGTTTGGTTTGGGG--AG-AAAGACT  991
      ||||||||||||||| ||||||||||||||||||||||  || ||| |||
seq2  ACCCTCTGACTTTCAAGCTCCATCTGTTTGGTTTGGGGGAAGAAAAAACT  1000

seq1  CAGCCTAGA--GAACAGTGTATTTTCCCTTTCTCAAGTTTATAGGCCTGA  1039
      ||| |||||   ||||||||||||  ||||||||||| | ||||| ||||
seq2  CAG-CTAGAAGAAACAGTGTATTT--CCTTTCTCAAGGTAATAGG-CTGA  1046

seq1  TGTTTATGACAATTGAAGGGGAAGGACTTTACTCTGACAACCCCCTAATA  1089
      || ||||||  | ||||  |||| |||  |||||||||||||||||||  
seq2  TG-TTATGAACAATGAA-AGGAAAGAC--TACTCTGACAACCCCCTAAAT  1092

seq1  TAAGCTAATTCTGTTGTCATGGACACATCT  1119
       |||||||||| ||||||||| | ||||||
seq2  AAAGCTAATTC-GTTGTCATGCA-ACATCT  1120