BAC Information

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BAC

Clone NameB6Ng01-284D14
Chromosome6 (Build37)14 (Build37)
Map Location 70,169,463 - 70,170,60323,443,694 - 23,443,791
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneGm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24
Downstream geneIgkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D14.bB6Ng01-284D14.g
ACCGA082982GA082983
length1,149473
definitionB6Ng01-284D14.b B6Ng01-284D14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,169,463 - 70,170,603)(23,443,694 - 23,443,791)
sequence
gaattcccctaggcctataggcatgacagatgaatggaaaaggaggaaat
tcatctgtgttattttgagtcagctggtttgtagtgtattttgaaccaca
gtccaaggaactgaaagccctgggacatattgtggaaaacatatttgtgg
gaaaagcagtaaataaggttgtcaggcttttgtggttatacacagaagaa
catggaaattttaccttccaagtccctatgctctccccttatatattatg
agaagctcatgtttaactgcaggagtctttggatttgttagacccctgtc
tccatgtgtccaatctgaatgagcagcagtaaatgacatgagaacacagt
ctgagatcactgggctatcacaaaggaaagtataaagtttatcgaggatt
gagaagacatgacatcttattagacattgatggggattgttgctcatctg
gtatattcttcagtttgtgattgggaactattttgttcattaattaatta
attaattaagtttacatcccaatctcagactcctcacctcccagagtcca
ccttacacagcttcttctcccatatacccatccctttctcctctgagaaa
ggggaggtccttaacacaccctgcgtaccaagccactataacacatcaag
tcacaggactaggcacatcctctctcaatgagctcagacaaggcagacca
gttaagggaacagggtttatagtcaggcaacagagtcagggagagttctt
gctgcagttgttggggtacttagaaatacaaagctatacatctgctacat
atgtgtgtgggatgcttaggaaggtgctaggttcagcccatgagtgctgt
ttcgatgtctattcagtctctgggagctccccaacggacaagtttagttg
actctgttggtctttcttatggagtcctgatcgcctctgggttccctttt
tcccttcctctaattctttcacaagactctgaacctgtgtctaatgtttg
tttactggtctctgcatctgttttgttcagctgctgggtggatcctcctc
agagacagtcatgctaggcctcctccctcctacccctatcctcttccaat
cccctgggtcctcttagcatgcctagtagctatgagatctgtacctttc
cctcacataagattcagtaattattttggaaaagggggtgggaagaatat
aaaacctagagaaaaaggaaaactgcaatgggattatatctcatagaaag
gtcagaatctgtacccataaagtctcaccatcttgattgtcaaaacatga
tcttaacatggagaataatatgctttgcaatgtggatagaggaagaacca
taagagtcaattttacataaacaacaactactggttaactaaagaatgaa
gagagttgaagaaattgtcttctctagagaagaccacaacaattagttat
ctggtcagctctgaaagcataccatgcatacaagtaacattagtaagact
aagcaggttgtatttatgtgtttatatgtatattcctaagtgcataatac
atatatgtgtatatatatgcatatattattatatatacatgttttgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70169463_70170603
seq2: B6Ng01-284D14.b_49_1197 (reverse)

seq1  GAAAAGTACAGATCTCATAGCTACTAGGCATGCT-AGAGGACCCAGGGGA  49
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAAGGTACAGATCTCATAGCTACTAGGCATGCTAAGAGGACCCAGGGGA  50

seq1  TGGGAAAGAGGATAGGGGTA-----GAGGAGAGCCTAGCATGACTGTCCT  94
      | || |||||||||||||||     |||||| ||||||||||||||| ||
seq2  TTGG-AAGAGGATAGGGGTAGGAGGGAGGAG-GCCTAGCATGACTGT-CT  97

seq1  CTGA-GAGGATCCACCCAGCAGCTGAACAAAACAGATGCAGAGACCAGTA  143
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGATCCACCCAGCAGCTGAACAAAACAGATGCAGAGACCAGTA  147

seq1  AACAAACATTAGACACA-GTTCAGAGTCTTGTGAAAGAATTAGAGGAA-G  191
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AACAAACATTAGACACAGGTTCAGAGTCTTGTGAAAGAATTAGAGGAAGG  197

seq1  GAAAAAGGGAA-CCAGAGGCGATCAGGACTCCATAAG-AAGACCAACAGA  239
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  GAAAAAGGGAACCCAGAGGCGATCAGGACTCCATAAGAAAGACCAACAGA  247

seq1  GTCAACTAAACTTGTCCGTTGGGGAGCTCCCAGAGACTGAATAGACATCG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTAAACTTGTCCGTTGGGGAGCTCCCAGAGACTGAATAGACATCG  297

seq1  AAACAGCACTCATGGGCTGAACCTAGCACCTTCCTAAGCATCCCACACAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCACTCATGGGCTGAACCTAGCACCTTCCTAAGCATCCCACACAC  347

seq1  ATATGTAGCAGATGTATAGCTTTGTATTTCTAAGTACCCCAACAACTGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCAGATGTATAGCTTTGTATTTCTAAGTACCCCAACAACTGCA  397

seq1  GCAAGAACTCTCCCTGACTCTGTTGCCTGACTATAAACCCTGTTCCCTTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACTCTCCCTGACTCTGTTGCCTGACTATAAACCCTGTTCCCTTA  447

seq1  ACTGGTCTGCCTTGTCTGAGCTCATTGAGAGAGGATGTGCCTAGTCCTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTGCCTTGTCTGAGCTCATTGAGAGAGGATGTGCCTAGTCCTGT  497

seq1  GACTTGATGTGTTATAGTGGCTTGGTACGCAGGGTGTGTTAAGGACCTCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATGTGTTATAGTGGCTTGGTACGCAGGGTGTGTTAAGGACCTCC  547

seq1  CCTTTCTCAGAGGAGAAAGGGATGGGTATATGGGAGAAGAAGCTGTGTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCAGAGGAGAAAGGGATGGGTATATGGGAGAAGAAGCTGTGTAA  597

seq1  GGTGGACTCTGGGAGGTGAGGAGTCTGAGATTGGGATGTAAACTTAATTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTCTGGGAGGTGAGGAGTCTGAGATTGGGATGTAAACTTAATTA  647

seq1  ATTAATTAATTAATGAACAAAATAGTTCCCAATCACAAACTGAAGAATAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAATTAATGAACAAAATAGTTCCCAATCACAAACTGAAGAATAT  697

seq1  ACCAGATGAGCAACAATCCCCATCAATGTCTAATAAGATGTCATGTCTTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGAGCAACAATCCCCATCAATGTCTAATAAGATGTCATGTCTTC  747

seq1  TCAATCCTCGATAAACTTTATACTTTCCTTTGTGATAGCCCAGTGATCTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTCGATAAACTTTATACTTTCCTTTGTGATAGCCCAGTGATCTC  797

seq1  AGACTGTGTTCTCATGTCATTTACTGCTGCTCATTCAGATTGGACACATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGTTCTCATGTCATTTACTGCTGCTCATTCAGATTGGACACATG  847

seq1  GAGACAGGGGTCTAACAAATCCAAAGACTCCTGCAGTTAAACATGAGCTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGGTCTAACAAATCCAAAGACTCCTGCAGTTAAACATGAGCTT  897

seq1  CTCATAATATATAAGGGGAGAGCATAGGGACTTGGAAGGTAAAATTTCCA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATATATAAGGGGAGAGCATAGGGACTTGGAAGGTAAAATTTCCA  947

seq1  TGTTCTTCTGTGTATAACCACAAAAGCCTGACAACCTTATTTACTGCTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTGTGTATAACCACAAAAGCCTGACAACCTTATTTACTGCTTT  997

seq1  TCCCACAAATATGTTTTCCACAATATGTCCCAGGGCTTTCAGTTCCTTGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAATATGTTTTCCACAATATGTCCCAGGGCTTTCAGTTCCTTGG  1047

seq1  ACTGTGGTTCAAAATACACTACAAACCAGCTGACTCAAAATAACACAGAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTTCAAAATACACTACAAACCAGCTGACTCAAAATAACACAGAT  1097

seq1  GAATTTCCTCCTTTTCCATTCATCTGTCATGCCTATAGGCCTAGGGGAAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTCCTTTTCCATTCATCTGTCATGCCTATAGGCCTAGGGGAAT  1147

seq1  TC  1141
      ||
seq2  TC  1149

seq1: chr14_23443694_23443791
seq2: B6Ng01-284D14.g_476_543 (reverse)

seq1  ACACACACACACACACACACACACACACATATGTGTGTGTATACATGTAT  50
      |||||||||||||||||||||||||||||           | ||||||||
seq2  ACACACACACACACACACACACACACACA-----------AAACATGTAT  39

seq1  ATATAATATATATTATATATAGAGTATATATATATGTGTATATACACA  98
      ||||||||      ||||||   | |||          ||||||||||
seq2  ATATAATA------ATATAT---GCATA----------TATATACACA  68