BAC Information

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BAC

Clone NameB6Ng01-286O24
Chromosome6 (Build37)14 (Build37)
Map Location 99,220,315 - 99,221,315114,071,636 - 114,072,225
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286O24.bB6Ng01-286O24.g
ACCGA084999GA085000
length1,058936
definitionB6Ng01-286O24.b B6Ng01-286O24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,220,315 - 99,221,315)(114,071,636 - 114,072,225)
sequence
gaattcccattgctctttcttgttcaccgtgcttgacttaaagaccagat
caaatccatttttctgtcaataggcgccacttagagccagatgtgctccc
tggagctccttgcctgaatcctattgtgctatcttgagtcaggcatgctg
acttgaactgagatcgctaactctggacgcaagaagttgtgctattgaac
gacatccttggctacctcatgaattcgctgagttcgctgatacagtccta
acttttcccaagaaaaaaaattgctggagacctcagcgggtaaattcatc
tataatgtgggctaaagagactgctcagatatccaaaacactgctcttat
gctcctgtgcatcacttccttatttctaactgcccaaagctggaaacaac
ccacataccccggctgggctgaatggatacattttatgtgttacttttac
aattacccctgtggcgaaagacatttaattatgtagattttatccttcct
aagcagttcgatggacctcttgggcatcaccttgagaagcatctggaccc
ctcaacacatctgtaatttcacctgtccatactttctgccatacaaacag
aaatatctataaatataatgtaccagcatacctgtttgagaactttttaa
aaaaataaactgtagggtactctgtttaatgaccaggcagggttttgtct
atacacaagagaagcttggattttggtgctccgctgtctagcaagctctt
ggctacatagtagttgctcataatgttcttaactgtgtcaaatatgaatt
cccaacgagaggggtgatttgagttagggtagtcatgtccattactaatt
ggaggggagcagcccacagttttgtgctagaaaggaaggctctgaaatat
tataagttcagctacgttttccccacatgctgaaagctgaggttgggctt
tctagcaaaaagcataagatggcaaagagaagcttactgaagggtggcct
tccttgaaacttcaaccctagatcaccatgacaatggcattactccagtt
gaagttct
gaattcaatggcagactgggctatatcaagttttagagaaggaaggaagg
gatggacgggattacttttttctcatttataatgcactcatgtccacaac
atctaaatattttcaaactattctggtatcgatatcaatatacacattga
atgtgtgtatttggtgattgtactagcaattcacattgtactaaactcag
tatgcaactgatgcacaactggaatatcttgactttaatatggattttct
gagaggtataataaaaatataaaaagtaaagtgtcatttcagaaatttca
gagtgttaacaatcatgaagcttgtctttcctatttcaacacaactagaa
gctattattaaaattatttctcccggaccaaaaaaatagattgctgtctt
atttatttatttatttatttatttatttatttatttatttattttcaact
tgacaggagttagaatcatctgagagggaaagtctttcctttctttcctt
ttaatttaattatatttattttacttattcactttacatactgcccacta
tcccactccaaggcaccccctcctacaatccttctcccctcccacatccc
cttatcctctgagctggtagaggtccccatgagaatctcccccaccctga
cacttcaacctaggcacttaccctggcactgaggacagacaaggcaacgc
agctaaaagagcatatcctactgggcagtggtggcacacgcctttaatcc
cagcacttgggatgcagagggaagaggatttctgagttcgaggccagcct
gttctacagagtgaattccaggacagccaggactatatagagaaaccctc
aaaaattaaaaatttaaaattaaaaaaaaataaagagttagtcttaggta
agcctggtcaacatagaaagtcttaaactaccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99220315_99221315
seq2: B6Ng01-286O24.b_97_1102 (reverse)

seq1  AGAACTTC-ACTGTGATAATGCCATTGTCATGTGAATCTAGGGGTTGAGT  49
      |||||||| ||||   ||||||||||||||||   |||||||| |  |||
seq2  AGAACTTCAACTGGAGTAATGCCATTGTCATGGTGATCTAGGGTTGAAGT  50

seq1  TTCAA-GAAAGCCACCCTTCAG-AAACTTTACTTCTGCCATCTTATGCTT  97
      ||||| ||| |||||||||||| || |||  ||| |||||||||||||||
seq2  TTCAAGGAAGGCCACCCTTCAGTAAGCTTCTCTT-TGCCATCTTATGCTT  99

seq1  TCTGCTAGAAA--CCAACCTCAGCTCTAAGCATGTGGGG-AAACGTTGCT  144
      | |||||||||  |||||||||||| | ||||||||||| |||||| |||
seq2  TTTGCTAGAAAGCCCAACCTCAGCTTTCAGCATGTGGGGAAAACGTAGCT  149

seq1  GAACTTATAATA-TTCAGAGCCTTTCCTTTTCTAGCACAAAACTGTGGGC  193
      |||||||||||| |||||||||||  | ||||||||||||||||||||||
seq2  GAACTTATAATATTTCAGAGCCTT--CCTTTCTAGCACAAAACTGTGGGC  197

seq1  TGCTCCCCTCCAATTAGTAATGGACATGACTACCCTAACTCAAATCACCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCTCCAATTAGTAATGGACATGACTACCCTAACTCAAATCACCC  247

seq1  CTCTCGTTGGGAATTCATATTTGACACAGTTAAGAACATTATGAGCAACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTGGGAATTCATATTTGACACAGTTAAGAACATTATGAGCAACT  297

seq1  ACTATGTAGCCAAGAGCTTGCTAGACAGCGGAGCACCAAAATCCAAGCTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAGCCAAGAGCTTGCTAGACAGCGGAGCACCAAAATCCAAGCTT  347

seq1  CTCCTGTGTATAGACAAAACCCTGCCTGGTCATTAAACAGAGTACCCTAC  393
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGTATAGACAAAACCCTGCCTGGTCATTAAACAGAGTACCCTAC  397

seq1  AGTTTATTTTTTTAAAAAGTTCTCAAACAGGTATGCTGGTACATTATATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTTTTAAAAAGTTCTCAAACAGGTATGCTGGTACATTATATT  447

seq1  TATAGATATTTCTGTTTGTATGGCAGAAAGTATGGACAGGTGAAATTACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATATTTCTGTTTGTATGGCAGAAAGTATGGACAGGTGAAATTACA  497

seq1  GATGTGTTGAGGGGTCCAGATGCTTCCAAAGGTGGAAATTAAGACGTTAG  543
      ||||||||||||||||||||||||||  ||||||      |||| ||   
seq2  GATGTGTTGAGGGGTCCAGATGCTTCTCAAGGTGATGCCCAAGAGGTCCA  547

seq1  ACGAACACTTCTATTTGGATAAAATCAACATAATAAAATGTCTTTCACCA  593
       |||||   |      |||||||||| ||||||| ||||||||||| |||
seq2  TCGAACTGCTTAGGAAGGATAAAATCTACATAATTAAATGTCTTTCGCCA  597

seq1  CAGGGGTAA-TAAGAAAGTAAGATAATAAAATAGGCTTCA--CAGCCCAG  640
      ||||||||| |   ||||||| |  ||||||| |  | ||  ||||||||
seq2  CAGGGGTAATTGTAAAAGTAACA-CATAAAAT-GTATCCATTCAGCCCAG  645

seq1  CCCTACTCTGCTCCTGGCTTTCCTAC-CTGGGCAGCTGGAATCAAGAAAC  689
      ||    | ||    | | |||||  |  ||||||| | |||  ||| || 
seq2  CCGGGGTATGTGGGTTG-TTTCCAGCTTTGGGCAGTTAGAAATAAGGAAG  694

seq1  TGAGCCA----AGGGTAAGAACTGTCAGTAATTAGGTTCTCAACAGAGTC  735
      |||  ||    ||  |||||     ||||  || || | ||     ||||
seq2  TGATGCACAGGAGCATAAGA----GCAGTGTTTTGGATATCTGAGCAGTC  740

seq1  ACGTTAGGTTCTGTTCTGGGTGTTTCTACCCACAGAGGGCCCCAGC-CTG  784
       | ||||      || | | ||  | ||||| | |||| | |||||  | 
seq2  TCTTTAGCCCACATTATAGATGAATTTACCCGCTGAGGTCTCCAGCAATT  790

seq1  CATGACACTGGTCATCTGAAGGACACACACAGCGAACCCAGCCGCCGGAT  834
        |     |||  |     |||||     |||||||| ||||      ||
seq2  TTTTTTCTTGGGAAAAGTTAGGACTGTATCAGCGAACTCAGCGAATTCAT  840

seq1  GAGGCATATCAACTAACT-GTTTAAGCCTGCACCAGTGTCTG-GGCCATA  882
      |||| |   |||  |  | ||| ||    |||| | |   || | ||| |
seq2  GAGGTA-GCCAAGGATGTCGTTCAA--TAGCACAACTTCTTGCGTCCAGA  887

seq1  GTTGGCAGACACAGCTCATGGCTGCCTACCAGACACAGGCTAGCACAGCT  932
      ||| ||   | ||| ||| | | || | || ||| || | |||||||   
seq2  GTTAGCGATCTCAGTTCAAGTCAGCATGCCTGACTCAAGATAGCACAATA  937

seq1  GGAGCCTGGCAAGGAGCTCCAGGGAGCACATCTGGCTCTTAGTGGCGCCC  982
      |||  | |||||||||||||||||||||||||||||||| ||||||||| 
seq2  GGATTCAGGCAAGGAGCTCCAGGGAGCACATCTGGCTCTAAGTGGCGCCT  987

seq1  ATCTGCAGTGAAATGGATT  1001
      ||   |||  |||||||||
seq2  ATTGACAGAAAAATGGATT  1006

seq1: chr14_114071636_114072225
seq2: B6Ng01-286O24.g_125_714 (reverse)

seq1  AGGGTGGGGGAGATTCTCATGGGGACCTCTACCAGCTCAGAGGATAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGGAGATTCTCATGGGGACCTCTACCAGCTCAGAGGATAAGGG  50

seq1  GATGTGGGAGGGGAGAAGGATTGTAGGAGGGGGTGCCTTGGAGTGGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGAGGGGAGAAGGATTGTAGGAGGGGGTGCCTTGGAGTGGGATA  100

seq1  GTGGGCAGTATGTAAAGTGAATAAGTAAAATAAATATAATTAAATTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTATGTAAAGTGAATAAGTAAAATAAATATAATTAAATTAAAA  150

seq1  GGAAAGAAAGGAAAGACTTTCCCTCTCAGATGATTCTAACTCCTGTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGGAAAGACTTTCCCTCTCAGATGATTCTAACTCCTGTCAAG  200

seq1  TTGAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  250

seq1  GACAGCAATCTATTTTTTTGGTCCGGGAGAAATAATTTTAATAATAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAATCTATTTTTTTGGTCCGGGAGAAATAATTTTAATAATAGCTT  300

seq1  CTAGTTGTGTTGAAATAGGAAAGACAAGCTTCATGATTGTTAACACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTGTTGAAATAGGAAAGACAAGCTTCATGATTGTTAACACTCTG  350

seq1  AAATTTCTGAAATGACACTTTACTTTTTATATTTTTATTATACCTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGAAATGACACTTTACTTTTTATATTTTTATTATACCTCTCAG  400

seq1  AAAATCCATATTAAAGTCAAGATATTCCAGTTGTGCATCAGTTGCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATATTAAAGTCAAGATATTCCAGTTGTGCATCAGTTGCATACT  450

seq1  GAGTTTAGTACAATGTGAATTGCTAGTACAATCACCAAATACACACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGTACAATGTGAATTGCTAGTACAATCACCAAATACACACATTC  500

seq1  AATGTGTATATTGATATCGATACCAGAATAGTTTGAAAATATTTAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATATTGATATCGATACCAGAATAGTTTGAAAATATTTAGATGT  550

seq1  TGTGGACATGAGTGCATTATAAATGAGAAAAAAGTAATCC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACATGAGTGCATTATAAATGAGAAAAAAGTAATCC  590