BAC Information

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BAC

Clone NameB6Ng01-287L06
Chromosome14 (Build37)
Map Location 117,801,688 - 117,802,692
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287L06.bB6Ng01-287L06.g
ACCGA085553GA085554
length1,1921,004
definitionB6Ng01-287L06.b B6Ng01-287L06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgcgccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggaggagctagagaaagtagccaaggagctaagggatctgcaaccta
taggtggaacaacattacgactaacagtacccggagctcttgactctagc
tgcatatatatcaaagatgctagtcgcaatcactggaaagagagtccatt
gactgcaacttaattgcccagttacaggaacacagtcaaaaggatgtgca
ggcaatggggtctcccaatggtttgtcttgtcgacgcactac
gaattcactttccatctattttgttactcctgaaaaatcctaaccagggg
acatggcacaaagtggtgacgtcctttgaaatacattgttcctaaagaat
aatctactaagtttatttagcattccaaagccatcatatgtgcgtgtgtt
ttctaagaaagaacagccatttttaaaaatttgacatgataatggaatag
tattgagcctatgaattctgtctcggggaacagagaaaaagcccttcctg
ctcctttatgtacttctagcccatcatggtggcctaatccctagagcaga
tcctcagtaggctccttgagtttcctaaagccgggatggtcttctccaca
ggaacttgaaacctctttgtacatctgatgagggggacataaagctatga
aacggtcacatgaagccttgtaagagaatggtgatctttggatttacatt
caaaagaatgtatactcatgctatgctgatagagagcatgcatccgggac
agctgattaacaagaagaaagcaacctcagtaaaacgaataggttgatag
atctgtatgtagggcgaaagtctcagagcaagcaccccatgggagttgaa
agtagatatggtgcccatgaagaaaaccatctgagtgtcatctgggattt
atgatgttccttaacagccaggagaccttaaacactaaatactctcatcc
ttctactactccattatctgagcacatgtgatactgacatctacacgatc
atttcagggataatgtctgatgtgtttacttggaattagagcctatcaaa
tcgcaagatcgttgtctcttctctcaaaagataccttgagactcccagat
atatgttggttgtgtaacaccactttctccagcaggatatatacactcat
gcacacacacacacacacacacacacacacacacacacacatgcatacat
gccatgaacatgtatgtaaaatatatatgtgtgtgtgtgtgtgtgtgtgt
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117801688_117802692
seq2: B6Ng01-287L06.g_67_1070

seq1  GAATTCACTTTCCATCTATTTTGTTACTCCTGAAAAATCCTAACCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCCATCTATTTTGTTACTCCTGAAAAATCCTAACCAGGGG  50

seq1  ACATGGCACAAAGTGGTGACGTCCTTTGAAATACATTGTTCCTAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCACAAAGTGGTGACGTCCTTTGAAATACATTGTTCCTAAAGAAT  100

seq1  AATCTACTAAGTTTATTTAGCATTCCAAAGCCATCATATGTGCGTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTAAGTTTATTTAGCATTCCAAAGCCATCATATGTGCGTGTGTT  150

seq1  TTCTAAGAAAGAACAGCCATTTTTAAAAATTTGACATGATAATGGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAAAGAACAGCCATTTTTAAAAATTTGACATGATAATGGAATAG  200

seq1  TATTGAGCCTATGAATTCTGTCTCGGGGAACAGAGAAAAAGCCCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCCTATGAATTCTGTCTCGGGGAACAGAGAAAAAGCCCTTCCTG  250

seq1  CTCCTTTATGTACTTCTAGCCCATCATGGTGGCCTAATCCCTAGAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTATGTACTTCTAGCCCATCATGGTGGCCTAATCCCTAGAGCAGA  300

seq1  TCCTCAGTAGGCTCCTTGAGTTTCCTAAAGCCGGGATGGTCTTCTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTAGGCTCCTTGAGTTTCCTAAAGCCGGGATGGTCTTCTCCACA  350

seq1  GGAACTTGAAACCTCTTTGTACATCTGATGAGGGGGACATAAAGCTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGAAACCTCTTTGTACATCTGATGAGGGGGACATAAAGCTATGA  400

seq1  AACGGTCACATGAAGCCTTGTAAGAGAATGGTGATCTTTGGATTTACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCACATGAAGCCTTGTAAGAGAATGGTGATCTTTGGATTTACATT  450

seq1  CAAAAGAATGTATACTCATGCTATGCTGATAGAGAGCATGCATCCGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATGTATACTCATGCTATGCTGATAGAGAGCATGCATCCGGGAC  500

seq1  AGCTGATTAACAAGAAGAAAGCAACCTCAGTAAAACGAATAGGTTGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTAACAAGAAGAAAGCAACCTCAGTAAAACGAATAGGTTGATAG  550

seq1  ATCTGTATGTAGGGCGAAAGTCTCAGAGCAAGCACCCCATGGGAGTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATGTAGGGCGAAAGTCTCAGAGCAAGCACCCCATGGGAGTTGAA  600

seq1  AGTAGATATGGTGCCCATGAAGAAAACCATCTGAGTGTCATCTGGGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATATGGTGCCCATGAAGAAAACCATCTGAGTGTCATCTGGGATTT  650

seq1  ATGATGTTCCTTAACAGCCAGGAGACCTTAAACACTAAATACTCTCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTCCTTAACAGCCAGGAGACCTTAAACACTAAATACTCTCATCC  700

seq1  TTCTACTACTCCATTATCTGAGCACATGTGATACTGACATCTACACGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTACTCCATTATCTGAGCACATGTGATACTGACATCTACACGATC  750

seq1  ATTTCAGGGATAATGTCTGATGTGTTTACTTGGAATTAGAGCCTATCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGATAATGTCTGATGTGTTTACTTGGAATTAGAGCCTATCAAA  800

seq1  TCGCAAGATCGTTGTCTCTTCTCTCAAAAGATACCTTGAGACTCCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAGATCGTTGTCTCTTCTCTCAAAAGATACCTTGAGACTCCCAGAT  850

seq1  ATATGTTGGTTGTGTAACACCACTTTCTCCAGCAGGATATATACACTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGGTTGTGTAACACCACTTTCTCCAGCAGGATATATACACTCAT  900

seq1  GCACACACACACACACACACACACACACACACACACACACATGCATACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACACACACACACACACACATGCATACAT  950

seq1  GCCCATGAACATGTATGTAAAATATATATGTGTGTGTGTGTGTGTGTGTG  1000
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CCATGAACATGTATGTAAAATATATATGTGTGTGTGTGTGTGTGTGTG  999

seq1  TATTT  1005
      |||||
seq2  TATTT  1004