This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-289A07
Chromosome
14 (Build37)
Map Location
23,157,906 - 23,318,482
singlet/doublet
doublet
Overlap gene
1700112E06Rik
Upstream gene
Adk
,
Myst4
,
EG435391
,
Dusp13
,
Samd8
,
Vdac2
,
Comtd1
,
Zfp503
,
EG665075
Downstream gene
EG435392
,
LOC665068
,
Kcnma1
Link
Open Mouse BAC browser
Click to get alignment info.
name
Adk
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11534
MGI:87930
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Myst4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:54169
MGI:1858746
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG435391
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435391
MGI:3647127
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dusp13
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:27389
MGI:1351599
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Samd8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67630
MGI:1914880
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Vdac2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22334
MGI:106915
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Comtd1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69156
MGI:1916406
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Zfp503
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:218820
MGI:1353644
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
1700112E06Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76633
MGI:1923883
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 2 Proteins
name
EG665075
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:665075
MGI:3648577
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
EG435392
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435392
MGI:3647128
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
name
LOC665068
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665068
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Kcnma1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16531
MGI:99923
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Adk
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142385206
GeneID:11534
MGI:87930
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: adenosine kinase
transcript_id
: NM_134079.2
name
Myst4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:110556651
GeneID:54169
MGI:1858746
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: MYST histone acetyltransferase monocytic leukemia 4
transcript_id
: NM_017479.2
name
EG435391
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802095
GeneID:435391
MGI:3647127
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG435391
transcript_id
: NM_001013826.2
name
Dusp13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:56118226
GeneID:27389
MGI:1351599
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dual specificity phosphatase 13
transcript_id
: NM_001007268.1
name
Dusp13
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:56118224
GeneID:27389
MGI:1351599
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: dual specificity phosphatase 13
transcript_id
: NM_013849.3
name
Samd8
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:85662411
GeneID:67630
MGI:1914880
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sterile alpha motif domain containing 8
transcript_id
: NM_026283.2
name
Vdac2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130063
GeneID:22334
MGI:106915
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: voltage-dependent anion channel 2
transcript_id
: NM_011695.2
name
Comtd1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142371609
GeneID:69156
MGI:1916406
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: catechol-O-methyltransferase domain containing 1
transcript_id
: NM_026965.2
name
Zfp503
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:42734490
GeneID:218820
MGI:1353644
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: zinc finger protein 503
transcript_id
: NM_145459.3
name
1700112E06Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94396713
GeneID:76633
MGI:1923883
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 2 Proteins
product
: RIKEN cDNA 1700112E06 gene, transcript variant 2
transcript_id
: XM_886604.2
name
EG665075
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94396715
GeneID:665075
MGI:3648577
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: predicted gene, EG665075
transcript_id
: XM_977116.1
name
EG435392
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:51768263
GeneID:435392
MGI:3647128
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
product
: predicted gene, EG435392
transcript_id
: XM_487321.1
name
Kcnma1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:111607491
GeneID:16531
MGI:99923
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: potassium large conductance calcium-activated channel, subfamily M, alpha member 1
transcript_id
: NM_010610.2
name
Adk
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19527306
CCDS:CCDS26862.1
GeneID:11534
MGI:87930
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0004001 - adenosine kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006166 - purine ribonucleoside salvage [Evidence IDA]
codon_start
: 1
product
: adenosine kinase
protein_id
: NP_598840.1
name
Myst4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110556652
GeneID:54169
MGI:1858746
definition
GO_component
: GO:0000786 - nucleosome [Evidence IEA] [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004406 - H3/H4 histone acetyltransferase activity [Evidence IDA]; GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence ISS]; GO:0016564 - transcriptional repressor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0016568 - chromatin modification [Evidence IEA]; GO:0016573 - histone acetylation [Evidence ISS] [Evidence IDA]; GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0006334 - nucleosome assembly [Evidence ISS] [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: histone acetyltransferase; monocytic leukemia; histone acetyltransferase querkopf
product
: MYST histone acetyltransferase monocytic leukemia 4
protein_id
: NP_059507.2
name
EG435391
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85701508
CCDS:CCDS26863.1
GeneID:435391
MGI:3647127
definition
codon_start
: 1
product
: hypothetical protein LOC435391
protein_id
: NP_001013848.1
name
Dusp13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:56118225
CCDS:CCDS26864.1
GeneID:27389
MGI:1351599
definition
EC_number
: 3.1.3.16
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IDA]
GO_process
: GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; dual-specificity tyrosine phosphatase TS-DSP6; Dusp13-like; Dsp13-like protein
product
: dual specificity phosphatase 13 isoform 2
protein_id
: NP_038877.2
name
Dusp13
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:56118227
GeneID:27389
MGI:1351599
definition
EC_number
: 3.1.3.16
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IDA]
GO_process
: GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; dual-specificity tyrosine phosphatase TS-DSP6; Dusp13-like; Dsp13-like protein
product
: dual specificity phosphatase 13 isoform 1
protein_id
: NP_001007269.1
name
Samd8
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21312864
CCDS:CCDS26866.1
GeneID:67630
MGI:1914880
definition
GO_component
: GO:0016021 - integral to membrane [Evidence NAS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0006629 - lipid metabolism [Evidence IEA]; GO:0006665 - sphingolipid metabolism [Evidence IEA]; GO:0006686 - sphingomyelin biosynthesis [Evidence NAS]
codon_start
: 1
note
: GrailEXP prediction
product
: sterile alpha motif domain containing 8
protein_id
: NP_080559.1
name
Vdac2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755965
CCDS:CCDS26867.1
GeneID:22334
MGI:106915
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005741 - mitochondrial outer membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA]
GO_function
: GO:0015288 - porin activity [Evidence IEA]; GO:0008308 - voltage-gated ion-selective channel activity [Evidence IEA]
GO_process
: GO:0006820 - anion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: voltage-dependent anion channel 2
protein_id
: NP_035825.1
name
Comtd1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33468999
CCDS:CCDS26868.1
GeneID:69156
MGI:1916406
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008171 - O-methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
codon_start
: 1
note
: O-methyltransferase-containing; O-methyltransferase-containing protein
product
: catechol-O-methyltransferase domain containing 1
protein_id
: NP_081241.1
name
Zfp503
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33186868
GeneID:218820
MGI:1353644
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
codon_start
: 1
product
: zinc-finger protein NOLZ1
protein_id
: NP_663434.2
name
1700112E06Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82953482
GeneID:76633
MGI:1923883
definition
codon_start
: 1
product
: hypothetical protein LOC76633 isoform 2
protein_id
: XP_891697.1
name
EG665075
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94396716
GeneID:665075
MGI:3648577
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_982210.1
name
EG435392
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51768264
GeneID:435392
MGI:3647128
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_487321.1
name
Kcnma1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:111607492
GeneID:16531
MGI:99923
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0015269 - calcium-activated potassium channel activity [Evidence IDA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IDA]
GO_process
: GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
note
: BK channel alpha subunit
product
: large conductance calcium-activated potassium channel subfamily M alpha member 1
protein_id
: NP_034740.2
name
LOC665068
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665068
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-418A24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-306K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-151F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539N14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-535P05
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-386K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-215N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-364I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518I06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545F21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463A17
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-439O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374J20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-155G07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139I01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-404L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107C08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-404C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347I02
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