BAC Information

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BAC

Clone NameB6Ng01-289D07
Chromosome14 (Build37)
Map Location 117,644,330 - 117,801,693
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289D07.bB6Ng01-289D07.g
ACCGA086670GA086671
length1,1201,162
definitionB6Ng01-289D07.b B6Ng01-289D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,800,590 - 117,801,693)(117,644,330 - 117,645,493)
sequence
gaattccttggtgcttctgggttggaacaaagatgctcgtggtgtcctgg
aagcagaagcagggcttccccttgtgctgttttcagcatgagactctaaa
caggtttgcagtcagtttaaatgctgcttaaacacaatgcaatgctgcaa
gaccaggtttcccagccctctgccaacactgccaacatcctctgtcaaca
gtgtttttcatattcacttccaacaaaacaaacaagggcatcaaatagct
cagggctcttcagtgttttaattaatgtgccatgaggaggaaggatacac
aggtttgtgcccagctgggactattttttgtcaaattcagttttaacacc
attagaagtttctttttttttttttttttctttcttgtacagatggatgt
tttgttgcatttttttttggaaataaatggagtctaactctggttctcac
ctgaaggtattgataaatatgtcggcttctgggttcctgccgttagtaga
gttagtttgatacagttacatcatttttggaaactttgaatttttgtaag
ggaacacgtttttaaatagccttgactttgataaaatttttgaacaataa
aagaggtttgtttcatctcgcctactatatgtatctgtagtaaaatattc
tagctttgccactgtcccaaacgtttctaggcatctctagtgaaagaagt
atgctttgtgtcattgagcaggagagtgaatattcctggtggctatgtac
caggctctgagagtgagcacacttggtaagtgtgaatacacacttgttat
ccactaacaggtcctgagaatggaccctgtaaattgcattgaataatggg
ggttcaggaaccccaaatgttgctgcttaacactttctcagaaaatgact
gtttttctaacagctttctttctgtgacaggctgggtcaatgaatcctgt
ttttttgtgccctagaatacttcttttactccacagcccaattgagaaat
ttgtttctgctcttaggaccaccagtccgtcttgccccccaccccccaaa
ttccagcctttcatggttcctatttatttccgttttaagtttttttaggt
ttattttttccatttttatt
gaattcaacctatttggatgtgtatgaacaagtctgaacttagtttgtgg
gacttggtgagacacagaaatgtgaatgttctgatacaaaaaaaaaaaaa
acattaaatctcaaaatggtggccaccaaggccttactgaagcatagact
ctgtagacacccttgactttgccagtagacacatgcacccgcttgctcag
agaagaaagtctctctgtagaaactgttcttattctctcagtcccctgat
gataaatgaatactcatagtctacgatattttatcatttcattttattta
ccccttatttaaatatatatatatatttagagaatccttccggtgtttta
ggaaatgaaaaagaagccatggatgaaatagacaaagaaaattgagccca
ggaatctcaagatacagttcaggaaatagacaaaataataatgaaaggag
taagtatctgaaatattacctaagggctttacacagggtgtcaggccaac
agcctaacgtggttaacggtaaggagaaaatgtggggtaaaaatgtggag
atctgaggagagatcatcttagaaacaggaaacagaacatgcaaaaatgt
taagtaacaaactggctggtactagtggacaattaaatagctgaaacaat
gtcctttccccagggctcagcacaccagatatcaccaaggacccaagccc
caggggcccttgtttgtccactaggatgagctgcagctggagctgactgg
tgcctgctggttgcctcttgaagcagtcagtgttctcccttccttcacac
atacacgctttcctctctgccacgtctcctttcctccgagtctagtgtac
aggtagctgggatacctatctaccctatgttgtagacttagcccctgctt
taattccatctctaagggcaggacacttccagctcaatttttcagaaggc
caacgtgtgcttccccttctcatctcctctgtgtcacacaatttgcagct
tctttcatgagagcagatccaggttataaattgcacggttcaatgaccaa
ctgtcttcaagcaagtaggcagcaagtgcgccaaatgccattatgagact
agcttaagccattttaggccagttgattgtaccagtcatgttactgagac
ctatagtgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117800590_117801693
seq2: B6Ng01-289D07.b_46_1165 (reverse)

seq1  AATAAAAAAGTGAAAAAAATAAAACTTAAAAAAATTTAAAAGGAAATAAA  50
      ||||||||  || |||||||||| || |||||| || ||| |||||||||
seq2  AATAAAAA--TGGAAAAAATAAACCTAAAAAAACTTAAAACGGAAATAAA  48

seq1  ATAGAACCATGAAAGCCTGGCATTT-GGGGGTGGGG---CAGACGG-CT-  94
         |||||||||||| |||| |||| ||||||||||    |||||| || 
seq2  TAGGAACCATGAAAGGCTGGAATTTGGGGGGTGGGGGGCAAGACGGACTG  98

seq1  GTGGTCTTTAGGAGCAGAA--CAATTTCTCAA-TGGGCTGTGGAGT-AAA  140
      ||||||  || ||||||||   |||||||||| ||||||||||||| |||
seq2  GTGGTC-CTAAGAGCAGAAACAAATTTCTCAATTGGGCTGTGGAGTAAAA  147

seq1  GAAGTATTCTA-GGCAC-AAAAAACAGGA-TCATTGACCCAGCCTGTCAC  187
      ||||||||||| ||||| ||||||||||| ||||||||||||||||||||
seq2  GAAGTATTCTAGGGCACAAAAAAACAGGATTCATTGACCCAGCCTGTCAC  197

seq1  AG-AAGAAAGCTGTTAG--AAACAGTTCATTTCTGAG-AAGTGTT-AGCA  232
      || ||||||||||||||  |||||||   |||||||| ||||||| ||||
seq2  AGAAAGAAAGCTGTTAGAAAAACAGTCATTTTCTGAGAAAGTGTTAAGCA  247

seq1  GCAACATTTGGGGTTCCTGAACCCCCATTA-TCAATGCAATTTACAGGGT  281
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAACATTTGGGGTTCCTGAACCCCCATTATTCAATGCAATTTACAGGGT  297

seq1  CCATTCTCAGGACCTGTTAGTGGATAACAAGTGTGTATTCACACTTACCA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCAGGACCTGTTAGTGGATAACAAGTGTGTATTCACACTTACCA  347

seq1  AGTGTGCTCACTCTCAGAGCCTGGTACATAGCCACCAGGAATATTCACTC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTCACTCTCAGAGCCTGGTACATAGCCACCAGGAATATTCACTC  397

seq1  TCCTGCTCAATGACACAAAGCATACTTCTTTCACTAGAGATGCCTAGAAA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCAATGACACAAAGCATACTTCTTTCACTAGAGATGCCTAGAAA  447

seq1  CGTTTGGGACAGTGGCAAAGCTAGAATATTTTACTACAGATACATATAGT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGGACAGTGGCAAAGCTAGAATATTTTACTACAGATACATATAGT  497

seq1  AGGCGAGATGAAACAAACCTCTTTTATTGTTCAAAAATTTTATCAAAGTC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGATGAAACAAACCTCTTTTATTGTTCAAAAATTTTATCAAAGTC  547

seq1  AAGGCTATTTAAAAACGTGTTCCCTTACAAAAATTCAAAGTTTCCAAAAA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATTTAAAAACGTGTTCCCTTACAAAAATTCAAAGTTTCCAAAAA  597

seq1  TGATGTAACTGTATCAAACTAACTCTACTAACGGCAGGAACCCAGAAGCC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAACTGTATCAAACTAACTCTACTAACGGCAGGAACCCAGAAGCC  647

seq1  GACATATTTATCAATACCTTCAGGTGAGAACCAGAGTTAGACTCCATTTA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTATCAATACCTTCAGGTGAGAACCAGAGTTAGACTCCATTTA  697

seq1  TTTCCAAAAAAAAATGCAACAAAACATCCATCTGTACAAGAAAGAAAAAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAAAAAAATGCAACAAAACATCCATCTGTACAAGAAAGAAAAAA  747

seq1  AAAAAAAAAAAGAAACTTCTAATGGTGTTAAAACTGAATTTGACAAAAAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAAACTTCTAATGGTGTTAAAACTGAATTTGACAAAAAA  797

seq1  TAGTCCCAGCTGGGCACAAACCTGTGTATCCTTCCTCCTCATGGCACATT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAGCTGGGCACAAACCTGTGTATCCTTCCTCCTCATGGCACATT  847

seq1  AATTAAAACACTGAAGAGCCCTGAGCTATTTGATGCCCTTGTTTGTTTTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACACTGAAGAGCCCTGAGCTATTTGATGCCCTTGTTTGTTTTG  897

seq1  TTGGAAGTGAATATGAAAAACACTGTTGACAGAGGATGTTGGCAGTGTTG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTGAATATGAAAAACACTGTTGACAGAGGATGTTGGCAGTGTTG  947

seq1  GCAGAGGGCTGGGAAACCTGGTCTTGCAGCATTGCATTGTGTTTAAGCAG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGCTGGGAAACCTGGTCTTGCAGCATTGCATTGTGTTTAAGCAG  997

seq1  CATTTAAACTGACTGCAAACCTGTTTAGAGTCTCATGCTGAAAACAGCAC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACTGACTGCAAACCTGTTTAGAGTCTCATGCTGAAAACAGCAC  1047

seq1  AAGGGGAAGCCCTGCTTCTGCTTCCAGGACACCACGAGCATCTTTGTTCC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGCCCTGCTTCTGCTTCCAGGACACCACGAGCATCTTTGTTCC  1097

seq1  AACCCAGAAGCACCAAGGAATTC  1104
      |||||||||||||||||||||||
seq2  AACCCAGAAGCACCAAGGAATTC  1120

seq1: chr14_117644330_117645493
seq2: B6Ng01-289D07.g_71_1232

seq1  GAATTCAACCTATTTGGATGTGTATGAACAAGTCTGAACTTAGTTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTATTTGGATGTGTATGAACAAGTCTGAACTTAGTTTGTGG  50

seq1  GACTTGGTGAGACACAGAAATGTGAATGTTCTGATACAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGAGACACAGAAATGTGAATGTTCTGATACAAAAAAAAAAAAA  100

seq1  ACATTAAATCTCAAAATGGTGGCCACCAAGGCCTTACTGAAGCATAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATCTCAAAATGGTGGCCACCAAGGCCTTACTGAAGCATAGACT  150

seq1  CTGTAGACACCCTTGACTTTGCCAGTAGACACATGCACCCGCTTGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACACCCTTGACTTTGCCAGTAGACACATGCACCCGCTTGCTCAG  200

seq1  AGAAGAAAGTCTCTCTGTAGAAACTGTTCTTATTCTCTCAGTCCCCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGTCTCTCTGTAGAAACTGTTCTTATTCTCTCAGTCCCCTGAT  250

seq1  GATAAATGAATACTCATAGTCTACGATATTTTATCATTTCATTTTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGAATACTCATAGTCTACGATATTTTATCATTTCATTTTATTTA  300

seq1  CCCCTTATTTAAATATATATATATATTTAGAGAATCCTTCCGGTGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTATTTAAATATATATATATATTTAGAGAATCCTTCCGGTGTTTTA  350

seq1  GGAAATGAAAAAGAAGCCATGGATGAAATAGACAAAGAAAATTGAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAAAAAGAAGCCATGGATGAAATAGACAAAGAAAATTGAGCCCA  400

seq1  GGAATCTCAAGATACAGTTCAGGAAATAGACAAAATAATAATGAAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAAGATACAGTTCAGGAAATAGACAAAATAATAATGAAAGGAG  450

seq1  TAAGTATCTGAAATATTACCTAAGGGCTTTACACAGGGTGTCAGGCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCTGAAATATTACCTAAGGGCTTTACACAGGGTGTCAGGCCAAC  500

seq1  AGCCTAACGTGGTTAACGGTAAGGAGAAAATGTGGGGTAAAAATGTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACGTGGTTAACGGTAAGGAGAAAATGTGGGGTAAAAATGTGGAG  550

seq1  ATCTGAGGAGAGATCATCTTAGAAACAGGAAACAGAACATGCAAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGAGAGATCATCTTAGAAACAGGAAACAGAACATGCAAAAATGT  600

seq1  TAAGTAACAAACTGGCTGGTACTAGTGGACAATTAAATAGCTGAAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACAAACTGGCTGGTACTAGTGGACAATTAAATAGCTGAAACAAT  650

seq1  GTCCTTTCCCCAGGGCTCAGCACACCAGATATCACCAAGGACCCAAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCCCCAGGGCTCAGCACACCAGATATCACCAAGGACCCAAGCCC  700

seq1  CAGGGGCCCTTGTTTGTCCACTAGGATGAGCTGCAGCTGGAGCTGACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCCTTGTTTGTCCACTAGGATGAGCTGCAGCTGGAGCTGACTGG  750

seq1  TGCCTGCTGGTTGCCTCTTGAAGCAGTCAGTGTTCTCCCTTCC-TCACAC  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCCTGCTGGTTGCCTCTTGAAGCAGTCAGTGTTCTCCCTTCCTTCACAC  800

seq1  ATACACGCTTTCCTCTCTGCCACGTCTCCTTTCCTCCGAGTCTAGTGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGCTTTCCTCTCTGCCACGTCTCCTTTCCTCCGAGTCTAGTGTAC  850

seq1  AGGTAGCTGGGATACCTATCTACCCTATGTTGTAGACTTAG-CCCTGCTT  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGTAGCTGGGATACCTATCTACCCTATGTTGTAGACTTAGCCCCTGCTT  900

seq1  TAATTCCATCTCTAAGGGGCAGGACACTTCCAGCTCAAATTTTCAGAAGG  948
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  TAATTCCATCTCTAA-GGGCAGGACACTTCCAGCTCAATTTTTCAGAAGG  949

seq1  CAAACGTGTGCTTCCCCTTCTCATCTTCCTCTGTGTCACAC-ATTTGCAG  997
      | ||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CCAACGTGTGCTTCCCCTTCTCATC-TCCTCTGTGTCACACAATTTGCAG  998

seq1  C-TCTTTCATGAAGAGCAAGAACAAGTAAT-AATTGCA-GCGTCAATGAA  1044
      | ||||||||| ||||||    || || || ||||||| |  ||||||| 
seq2  CTTCTTTCATG-AGAGCAGATCCAGGTTATAAATTGCACGGTTCAATGAC  1047

seq1  CCACCGTTCTCAGGC-AGTAGGCAGCAAGGTGCGCC-AATGCAATTATGA  1092
      | || ||  ||| || |||||||||||| ||||||| ||||| |||||||
seq2  CAACTGTCTTCAAGCAAGTAGGCAGCAA-GTGCGCCAAATGCCATTATGA  1096

seq1  GACTAGGCTTTAGCCATTTTATG-CAGTGATGAAATTGGTACCCAGTCAT  1141
      ||||| |||| |||||||||| | ||||  |||   | ||| ||||||||
seq2  GACTA-GCTTAAGCCATTTTAGGCCAGT--TGA---TTGTA-CCAGTCAT  1139

seq1  GTTAACTGAG-CTAAAAGTGCAGC  1164
      ||| |||||| |  | ||||||||
seq2  GTT-ACTGAGACCTATAGTGCAGC  1162