BAC Information

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BAC

Clone NameB6Ng01-289F21
Chromosome14 (Build37)
Map Location 29,935,889 - 30,100,572
singlet/doubletdoublet
Overlap geneCacna2d3, Ppia-ps15
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F21.bB6Ng01-289F21.g
ACCGA086791GA086792
length7661,084
definitionB6Ng01-289F21.b B6Ng01-289F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,099,807 - 30,100,572)(29,935,889 - 29,936,970)
sequence
gaattccaccctacacctttcccaaaagtactaatcgtctccttatgctc
ctagaaccatcagaccatgagccaagaatccaacccgtaaactggacaga
ttcaaaaagttagtttttaacccttcccaaacataaagagattagcatca
ctctaccccttttataagggaaggaccaatctactcatgagctgacaaac
ttcatttgtcttttcgttaccattacaggttgatattttgcttgcatgtt
aaataatagattacccattaacttactcttggtgtggatagaagaacaat
gcctgggtattaaatgtggataatgacccatcttccctcttgaatgtcat
tgagcaatccattctcacaggactctggatggagcaatagaaatggttct
tgaattctctgttaacttcctcttcattccccagaccctggatttccttc
gataaataatcagttttaacctgatcccttgtggcctcaattcttaagat
gacactgacacctggagaccaatttttactgtgtgcagaatgttagccgt
tttaaacctttcaggtgccactgtatgagatgagaacactctttttcttt
ctttttctttttctttttctttctctttttctttctctttttctctttct
gtctgtcttccttcattctttccttcctttcttcctttctttcttccttt
ctttctttctttctttctttctttctctctttctctctttctctctttct
ctctttctctctttct
gaattccagtccaatgttcttcttgaacctaaccctacaaaaccttttca
gtaccttcactgttttagtaagggggaaaaacaacaacaaaacaaaacaa
acaaaacaaaacccaaaacaacatgctaagaataggagacagagctcttc
ccagctagtcagagctacagaagaaggcctttggactgtctgccatctgc
tggagacaggggaagaactgagcaagcagttcaagaagcctccttgactg
ggttctctgatcatggtagtatgtcctgctttgagagccgaaggaatgag
atcgatgacataagtgctgtggagaatcgcagagcccacaacactggcaa
cattgcttttactgctgtctgccttggtttgtttggactttgttttaaaa
ttccatggctgatagcacctccagctcttgaggcatcttctacaagaaca
tttttgtatagggaccagaggaactgcctaaatgcctgtgaggtaaagta
ggtccatttctgacttgttaagtctctttctaaaataaggtttctttttt
caaacatgggcaaagacatcaagagttccaaacaatgtagattctgactg
tatatttactctggaagccgctgttatcttggattccttgaacttttaat
gaagtgttcaatcctggtgtgatggcactccagtgtaatcaaacattgcc
atgagccaagtcacacactagcatgtcttgccttgtttagatatctcaaa
tatatctgagtaattgtgtaatgatttctaggccttcggtcgtccatatg
gtttgaacagactgtcttttgtatgacagttgtgcaccctcttgatgagg
aagactggaagcaccctgttctgatgcacacgtctcaagatgctacctta
atttcatgcaggcaccataccttaactcttgaaatgaaactagcccacat
ctggtctccagaactgttgtgttcttccggaagttgctgatatttgtgga
atacaatgagaataatgcagcaggcatggcgggacatttcttttttttaa
atacccatactggtccttaggatacaacagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30099807_30100572
seq2: B6Ng01-289F21.b_47_812 (reverse)

seq1  AGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAAAG  50

seq1  AAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGGAAGAAAGGAAGGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGGAAGAAAGAAAGGAAGAAAGGAAGGAAAGA  100

seq1  ATGAAGGAAGACAGACAGAAAGAGAAAAAGAGAAAGAAAAAGAGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAGACAGACAGAAAGAGAAAAAGAGAAAGAAAAAGAGAAAGAA  150

seq1  AAAGAAAAAGAAAAAGAAAGAAAAAGAGTGTTCTCATCTCATACAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAAAAAGAAAGAAAAAGAGTGTTCTCATCTCATACAGTGGC  200

seq1  ACCTGAAAGGTTTAAAACGGCTAACATTCTGCACACAGTAAAAATTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGGTTTAAAACGGCTAACATTCTGCACACAGTAAAAATTGGTC  250

seq1  TCCAGGTGTCAGTGTCATCTTAAGAATTGAGGCCACAAGGGATCAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGTCAGTGTCATCTTAAGAATTGAGGCCACAAGGGATCAGGTTA  300

seq1  AAACTGATTATTTATCGAAGGAAATCCAGGGTCTGGGGAATGAAGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATTATTTATCGAAGGAAATCCAGGGTCTGGGGAATGAAGAGGAA  350

seq1  GTTAACAGAGAATTCAAGAACCATTTCTATTGCTCCATCCAGAGTCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGAGAATTCAAGAACCATTTCTATTGCTCCATCCAGAGTCCTGT  400

seq1  GAGAATGGATTGCTCAATGACATTCAAGAGGGAAGATGGGTCATTATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGATTGCTCAATGACATTCAAGAGGGAAGATGGGTCATTATCCA  450

seq1  CATTTAATACCCAGGCATTGTTCTTCTATCCACACCAAGAGTAAGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATACCCAGGCATTGTTCTTCTATCCACACCAAGAGTAAGTTAAT  500

seq1  GGGTAATCTATTATTTAACATGCAAGCAAAATATCAACCTGTAATGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATCTATTATTTAACATGCAAGCAAAATATCAACCTGTAATGGTAA  550

seq1  CGAAAAGACAAATGAAGTTTGTCAGCTCATGAGTAGATTGGTCCTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGACAAATGAAGTTTGTCAGCTCATGAGTAGATTGGTCCTTCCCT  600

seq1  TATAAAAGGGGTAGAGTGATGCTAATCTCTTTATGTTTGGGAAGGGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGGGTAGAGTGATGCTAATCTCTTTATGTTTGGGAAGGGTTAA  650

seq1  AAACTAACTTTTTGAATCTGTCCAGTTTACGGGTTGGATTCTTGGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACTTTTTGAATCTGTCCAGTTTACGGGTTGGATTCTTGGCTCAT  700

seq1  GGTCTGATGGTTCTAGGAGCATAAGGAGACGATTAGTACTTTTGGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATGGTTCTAGGAGCATAAGGAGACGATTAGTACTTTTGGGAAAG  750

seq1  GTGTAGGGTGGAATTC  766
      ||||||||||||||||
seq2  GTGTAGGGTGGAATTC  766

seq1: chr14_29935889_29936970
seq2: B6Ng01-289F21.g_68_1151

seq1  GAATTCCAGTCCAATGTTCTTCTTGAACCTAACCCTACAAAACCTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCAATGTTCTTCTTGAACCTAACCCTACAAAACCTTTTCA  50

seq1  GTACCTTCACTGTTTTAGTAAGGGGGAAAAACAACAACAAAACAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCACTGTTTTAGTAAGGGGGAAAAACAACAACAAAACAAAACAA  100

seq1  ACAAAACAAAACCCAAAACAACATGCTAAGAATAGGAGACAGAGCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACCCAAAACAACATGCTAAGAATAGGAGACAGAGCTCTTC  150

seq1  CCAGCTAGTCAGAGCTACAGAAGAAGGCCTTTGGACTGTCTGCCATCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGTCAGAGCTACAGAAGAAGGCCTTTGGACTGTCTGCCATCTGC  200

seq1  TGGAGACAGGGGAAGAACTGAGCAAGCAGTTCAAGAAGCCTCCTTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGGGGAAGAACTGAGCAAGCAGTTCAAGAAGCCTCCTTGACTG  250

seq1  GGTTCTCTGATCATGGTAGTATGTCCTGCTTTGAGAGCCGAAGGAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTGATCATGGTAGTATGTCCTGCTTTGAGAGCCGAAGGAATGAG  300

seq1  ATCGATGACATAAGTGCTGTGGAGAATCGCAGAGCCCACAACACTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATGACATAAGTGCTGTGGAGAATCGCAGAGCCCACAACACTGGCAA  350

seq1  CATTGCTTTTACTGCTGTCTGCCTTGGTTTGTTTGGACTTTGTTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTTACTGCTGTCTGCCTTGGTTTGTTTGGACTTTGTTTTAAAA  400

seq1  TTCCATGGCTGATAGCACCTCCAGCTCTTGAGGCATCTTCTACAAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGCTGATAGCACCTCCAGCTCTTGAGGCATCTTCTACAAGAACA  450

seq1  TTTTTGTATAGGGACCAGAGGAACTGCCTAAATGCCTGTGAGGTAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTATAGGGACCAGAGGAACTGCCTAAATGCCTGTGAGGTAAAGTA  500

seq1  GGTCCATTTCTGACTTGTTAAGTCTCTTTCTAAAATAAGGTTTCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTTCTGACTTGTTAAGTCTCTTTCTAAAATAAGGTTTCTTTTTT  550

seq1  CAAACATGGGCAAAGACATCAAGAGTTCCAAACAATGTAGATTCTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGGCAAAGACATCAAGAGTTCCAAACAATGTAGATTCTGACTG  600

seq1  TATATTTACTCTGGAAGCCGCTGTTATCTTGGATTCCTTGAACTTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTACTCTGGAAGCCGCTGTTATCTTGGATTCCTTGAACTTTTAAT  650

seq1  GAAGTGTTCAATCCTGGTGTGATGGCACTCCAGTGTAATCAAACATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTCAATCCTGGTGTGATGGCACTCCAGTGTAATCAAACATTGCC  700

seq1  ATGAGCCAAGTCACACACTAGCATGTCTTGCCTTGTTTAGATATCTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCAAGTCACACACTAGCATGTCTTGCCTTGTTTAGATATCTCAAA  750

seq1  TATATCTGAGTAATTGTGTAATGATTTCTAGGCCTTCGGTCGTCCATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGAGTAATTGTGTAATGATTTCTAGGCCTTCGGTCGTCCATATG  800

seq1  GTTTGAACAGACTGTCTTTTGTATGACAGTTGTGCACCCTCTTGATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACAGACTGTCTTTTGTATGACAGTTGTGCACCCTCTTGATGAGG  850

seq1  AAGACTGGAAGCACCCTGTTCTGATGCACACGTCTCAAGATGCTACCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAAGCACCCTGTTCTGATGCACACGTCTCAAGATGCTACCTTA  900

seq1  ATTTCATGCAGGCACCATACCTTAACTCTTGAAATGAAACTAGCCCACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCAGGCACCATACCTTAACTCTTGAAATGAAACTAGCCCACAT  950

seq1  CTGGTCTCCAGAAACTGTTGTG-TCTTCCGGAAGGTTTGCTGATATTTGT  999
      ||||||||||| |||||||||| |||||||||||  ||||||||||||||
seq2  CTGGTCTCCAG-AACTGTTGTGTTCTTCCGGAAG--TTGCTGATATTTGT  997

seq1  GGAATAC-ATGAGAATAATGCAGCAGGCATGGCGGGACATTTC--TTTTT  1046
      ||||||| |||||||||||||||||||||||||||||||||||  |||||
seq2  GGAATACAATGAGAATAATGCAGCAGGCATGGCGGGACATTTCTTTTTTT  1047

seq1  TAAATA-CCATAACTGTCCTTAGGATACAACAGCATG  1082
      |||||| |||||   ||||||||||||||||||||||
seq2  TAAATACCCATACTGGTCCTTAGGATACAACAGCATG  1084