BAC Information

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BAC

Clone NameB6Ng01-291C02
Chromosome14 (Build37)
Map Location 42,611,485 - 42,725,584
singlet/doubletdoublet
Overlap gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849
Downstream geneLOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291C02.bB6Ng01-291C02.g
ACCGA088099GA088100
length6321,115
definitionB6Ng01-291C02.b B6Ng01-291C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,611,485 - 42,612,116)(42,724,467 - 42,725,584)
sequence
gaattctaggagaagctgcagtgcagccagatttggaggagtcccaaaac
cctcctgggacaactagtcatggagtttgttcagcagccatccatctgca
gcagttagggtgttcttcagagtcacatctcttctctaaagctttgaaga
accacctgtctgagggccagaagctcttgtgggtatctgctgatgcaaag
ttagaaacagctctactaagtactcagcctgatgcacagagtcctaagga
gaaacacagcaaatacagcggtctgaaggaaatgacaaagtacccaaaat
ctgagtatccaaggctgtatcctcagattagaaaagttaaaagaaaaaat
ggagagggaacccagtaagtagcaatggggagaagggaggccaggtgttc
ctggtgctcatgaactctgcagagagttcacagcaaatttcaatgtggat
tatgaaagtagaaaatgttcactgtgttttatgacattcaccttgtttgg
gcagataatccatgcaggaagtctgagaaagggctaagaaacaaatttga
tctcagagaaacaggaggactggggttctctagtgtagtatactgtagtt
tggtgtggtgcggtgtgttgtggtgaagtgta
gaattccccaggacatcagtgaggccttgtacaagtacacggagttgact
aaagaaaatcaattctactggtgagtgactaacagggtcctgatccaaac
actaggcaaaggatatgtctgtccatccttgtctttgaaccaaagtaggg
gctcagtttatatactgtttgtctctaaaccagaagcctggctccttcaa
agcaaggctctaggatttttacctcttaaaggcattttggccaagtgtga
agagtctgtgagcaactcaaatcattgtcctttccaacaaagtatatttg
aaggaagatacagagataaggtttccatgggacacctagaaagactgtat
gttggttgggtctcttctcttctcctagagaaggtctgccttctacctac
aggtgatttttaaataacatggacatataagcacacatgtgttccaggta
cccttgagagatacttaagtccctgttagtgtcacagtttacagatgtac
cacggcttctgaaatatggctgtcctctagatttgacctctctcaatgtg
aagctccatggccaatatggacagttgtctggggctgtctgggcaccagg
gcccattgtggcagggatggtccttggaggagtgggaggaagatggatgc
tgacttgtgtaatcatttgtttgtttgtgactcggcatcgggcactgcca
cctccagagtgaatctaaccatctccagcacaaagtcaggatgttgtgga
aggagaacagacagttgctagaggagcagattgcattagaaaatgctcca
atgaatcaaagaggctgtgtaaagaaggcagcctgaaaaccaatgaccta
tgtaccaagcagcagcaggtagggtgcataaatcatgaggagaaggtgca
gtcttgtctaaccttaaacacagtcaagccttagcaaccatcctgtacct
tattccatgcttctctcctatgtctcatccagttgttcatttctgtgaat
cattttccaggactttatgtgcagtatcctccttcaagaaactacataat
ttggagttcacaatcatgctcactaaaagctgcatttcttatgaagaata
gttgaacactagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42611485_42612116
seq2: B6Ng01-291C02.b_44_675

seq1  GAATTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAGTCCCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAGTCCCAAAAC  50

seq1  CCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCCATCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCATCCATCTGCA  100

seq1  GCAGTTAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAGCTTTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAGCTTTGAAGA  150

seq1  ACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCTGATGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCTGATGCAAAG  200

seq1  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGTCCTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAGTCCTAAGGA  250

seq1  GAAACACAGCAAATACAGCGGTCTGAAGGAAATGACAAAGTACCCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGCAAATACAGCGGTCTGAAGGAAATGACAAAGTACCCAAAAT  300

seq1  CTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAAGTTAAAAGAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAAGTTAAAAGAAAAAAT  350

seq1  GGAGAGGGAACCCAGTAAGTAGCAATGGGGAGAAGGGAGGCCAGGTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAACCCAGTAAGTAGCAATGGGGAGAAGGGAGGCCAGGTGTTC  400

seq1  CTGGTGCTCATGAACTCTGCAGAGAGTTCACAGCAAATTTCAATGTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTCATGAACTCTGCAGAGAGTTCACAGCAAATTTCAATGTGGAT  450

seq1  TATGAAAGTAGAAAATGTTCACTGTGTTTTATGACATTCACCTTGTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGTAGAAAATGTTCACTGTGTTTTATGACATTCACCTTGTTTGG  500

seq1  GCAGATAATCCATGCAGGAAGTCTGAGAAAGGGCTAAGAAACAAATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAATCCATGCAGGAAGTCTGAGAAAGGGCTAAGAAACAAATTTGA  550

seq1  TCTCAGAGAAACAGGAGGACTGGGGTTCTCTAGTGTAGTATACTGTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAAACAGGAGGACTGGGGTTCTCTAGTGTAGTATACTGTAGTT  600

seq1  TGGTGTGGTGCGGTGTGTTGTGGTGAAGTGTA  632
      ||||||||||||||||||||||||||||||||
seq2  TGGTGTGGTGCGGTGTGTTGTGGTGAAGTGTA  632

seq1: chr14_42724467_42725584
seq2: B6Ng01-291C02.g_67_1181 (reverse)

seq1  ATACTATGTGTTCAACCTATCTCTCATAAGGAAATGCAGCTTTTAGTTGA  50
      |||||| |||||||| ||||   |||||| |||||||||||||||| |||
seq2  ATACTA-GTGTTCAA-CTATTCTTCATAA-GAAATGCAGCTTTTAG-TGA  46

seq1  GCATGATTGTTGACTTCCCAAATATGTAGTTTCTTGAAGGAGGATAACTG  100
      ||||||||| |||  ||| || ||||||||||||||||||||||| ||||
seq2  GCATGATTG-TGAACTCCAAATTATGTAGTTTCTTGAAGGAGGAT-ACTG  94

seq1  CACATAAAGTCTTGG-AAATGA-TCACAGAAATGAACAACTGGATGAGAC  148
      ||||||||||| ||| |||||| |||||||||||||||||||||||||||
seq2  CACATAAAGTCCTGGAAAATGATTCACAGAAATGAACAACTGGATGAGAC  144

seq1  ATAGGAGAG-AGCATGG-ATAAGGTACAGGATGGTTGCTTAGGCTTGACT  196
      ||||||||| ||||||| ||||||||||||||||||||| ||||||||||
seq2  ATAGGAGAGAAGCATGGAATAAGGTACAGGATGGTTGCTAAGGCTTGACT  194

seq1  GTGTTTAAGGTTAGACAAGACTGCAACCTTCTCCTCATGATTTATGCACC  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGTTTAAGGTTAGACAAGACTGC-ACCTTCTCCTCATGATTTATGCACC  243

seq1  CTACCTGCTGCTGCTTGGTACATAGGTCATTGGTTTTCAGGCTGCCTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCTGCTGCTTGGTACATAGGTCATTGGTTTTCAGGCTGCCTTCT  293

seq1  TTACACAGCCTCTTTGATTCATTGGAGCATTTTCTAATGCAATCTGCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCCTCTTTGATTCATTGGAGCATTTTCTAATGCAATCTGCTCC  343

seq1  TCTAGCAACTGTCTGTTCTCCTTCCACAACATCCTGACTTTGTGCTGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAACTGTCTGTTCTCCTTCCACAACATCCTGACTTTGTGCTGGAG  393

seq1  ATGGTTAGATTCACTCTGGAGGTGGCAGTGCCCGATGCCGAGTCACAAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGATTCACTCTGGAGGTGGCAGTGCCCGATGCCGAGTCACAAAC  443

seq1  AAACAAATGATTACACAAGTCAGCATCCATCTTCCTCCCACTCCTCCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGATTACACAAGTCAGCATCCATCTTCCTCCCACTCCTCCAAG  493

seq1  GACCATCCCTGCCACAATGGGCCCTGGTGCCCAGACAGCCCCAGACAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCCCTGCCACAATGGGCCCTGGTGCCCAGACAGCCCCAGACAACT  543

seq1  GTCCATATTGGCCATGGAGCTTCACATTGAGAGAGGTCAAATCTAGAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATATTGGCCATGGAGCTTCACATTGAGAGAGGTCAAATCTAGAGGA  593

seq1  CAGCCATATTTCAGAAGCCGTGGTACATCTGTAAACTGTGACACTAACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATATTTCAGAAGCCGTGGTACATCTGTAAACTGTGACACTAACAG  643

seq1  GGACTTAAGTATCTCTCAAGGGTACCTGGAACACATGTGTGCTTATATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAAGTATCTCTCAAGGGTACCTGGAACACATGTGTGCTTATATGT  693

seq1  CCATGTTATTTAAAAATCACCTGTAGGTAGAAGGCAGACCTTCTCTAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTATTTAAAAATCACCTGTAGGTAGAAGGCAGACCTTCTCTAGGA  743

seq1  GAAGAGAAGAGACCCAACCAACATACAGTCTTTCTAGGTGTCCCATGGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGAGACCCAACCAACATACAGTCTTTCTAGGTGTCCCATGGAA  793

seq1  ACCTTATCTCTGTATCTTCCTTCAAATATACTTTGTTGGAAAGGACAATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCTCTGTATCTTCCTTCAAATATACTTTGTTGGAAAGGACAATG  843

seq1  ATTTGAGTTGCTCACAGACTCTTCACACTTGGCCAAAATGCCTTTAAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTTGCTCACAGACTCTTCACACTTGGCCAAAATGCCTTTAAGAG  893

seq1  GTAAAAATCCTAGAGCCTTGCTTTGAAGGAGCCAGGCTTCTGGTTTAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATCCTAGAGCCTTGCTTTGAAGGAGCCAGGCTTCTGGTTTAGAG  943

seq1  ACAAACAGTATATAAACTGAGCCCCTACTTTGGTTCAAAGACAAGGATGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGTATATAAACTGAGCCCCTACTTTGGTTCAAAGACAAGGATGG  993

seq1  ACAGACATATCCTTTGCCTAGTGTTTGGATCAGGACCCTGTTAGTCACTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATATCCTTTGCCTAGTGTTTGGATCAGGACCCTGTTAGTCACTC  1043

seq1  ACCAGTAGAATTGATTTTCTTTAGTCAACTCCGTGTACTTGTACAAGGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAGAATTGATTTTCTTTAGTCAACTCCGTGTACTTGTACAAGGCC  1093

seq1  TCACTGATGTCCTGGGGAATTC  1118
      ||||||||||||||||||||||
seq2  TCACTGATGTCCTGGGGAATTC  1115