BAC Information

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BAC

Clone NameB6Ng01-292A12
Chromosome14 (Build37)
Map Location 109,189,755 - 109,308,718
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668757, EG668761
Downstream geneSlitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292A12.bB6Ng01-292A12.g
ACCGA088772GA088773
length1,1241,153
definitionB6Ng01-292A12.b B6Ng01-292A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,307,580 - 109,308,718)(109,189,755 - 109,190,884)
sequence
gaattcaacatctgctgaaaacggtaaaactaattagtggccacccaccc
tccgccccagcaactacatactgaaaattgttgaagtactcatctttatg
gaaatcaatcattatcctaaaaaaagtgtttcactcttatcataccaatt
tctggttaaggcccagtaattaccaagggaaagcagtgaactatttgaat
tttactgaccaatgtaattctggtctgaatcagatgccctagggaattct
aagcaactctatttcatcagcagttaggttacaaaccacacatattgatg
gtctttgcattccaccacacatccagtctcaagaagtatgtcaaagacag
gaggccacagactgaaactgcagaattaaaagccagctcagtaaaagccc
ccaggagcaggtggaacgagatgtgccagttagaattcatattctaaaaa
gaaatgatttcccagaacagtgatgttgtggagtatgtgttatttatctt
aacacttttaaaataaaatctttattatacacagtgactgttcctcaggg
catctattaccttttttccctgatacttttgcttatgggctgcatttcat
aatgataatggaagatgactgtcctctggcaattgatcttggtgatttac
ctaccatttattttttatatgaaagctttaatatttcaatggtatttttg
gtaaaaaaaaaaaaagaaactaacagattctttcatggtggaaaaaaatg
gagaaggggatgggtcatctctcctctgatgttaagaaagagtaaaagaa
aaaaataaacaaggcagatttagaaaggcctctcatgaaagttggcattt
attgagtaatattgactgaagttttaaagctgatcaataattagtgaaag
gtcaggacaggaatgtgtcatagaaacatacacagtgaaacaagttttct
ttaatgaacaggaattagtatgtaaacccgagttaaagcagctaaattgt
caaatatagtttatgattttctttgagtctttgttgccagacatgctgga
taacacctcattaggttcagatccacagctgacttctggatgctatttca
ttataagatgaatcactgaagcta

gaattccaggatggagaagggggaatggatgggtatgggaaacaccctca
aagaagcagggtgagaggggatataatagggggttctcagaaggggaacc
aggaaaggggataacatttgaaatgcaaataaagaaaatttctaataaaa
tatttcaaaagagaacaaatataaagcatgcatttctactcctatcaact
ttgcattccttgtgtgccaacatttaaaaagttaaaatgtagttcgttga
ttgtctaatgtcataggaaaattgattatcttcaacatttagacacagtt
aaaacattcattaggcacatccccattgtttccttgacattgtttctgag
aagtttctagttctcttacaattatctccttttacatcttttggcacaga
agaatgttgttagtaaggtctaagtgtcttataatgcacagtaattgttg
ttcttaataaaggtcattgtgtatttaggcaaaataaacacagtgatttt
ttttctgacatttactttctactgaacaaaatcaaataaacctgcaagta
tctttttgtaaataaaatgacaagatggagtgaatagaatagtatatttg
gaaattaggacattctattttagatagccttttcaggttacttggaatat
aaatttcttacattacactgaatctttcatcttgactcaacaaaattcag
atcattaaaggaatgaaaacctatgttctattgccgttactgtgtgaaga
gattgttaaattggttgttatcttcctgtaacttgtcaaacaccctcact
gtgtgtgccatgccacaatcagaggttcctgaactcagtgtgatgaaaaa
ggttcccttgttttaaataggtataagaaacctaaaaggatccaaatgac
acttgctcagtggtagactactaaccaagaaatcaaaagtgcctaatctt
tcctggcctagatgccagctagctttactcagcctcctgcttgcagtggt
tagtccagcccccatacgttgggtgtagaaagcacagtttagaaatagta
ttcagagattacaggattgtccaaaacttcgggccaattttcctcaatcc
aagaaaatgtctgacccttatctagtccccctggaaatggcctatggtgg
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109307580_109308718
seq2: B6Ng01-292A12.b_45_1168 (reverse)

seq1  TAGCCTCAGTGATCTCATCTTTATAATGGAAATAGCATCAGAAAGTCACC  50
      |||| |||||||| ||||| ||||||| |||||||||||   ||||||  
seq2  TAGCTTCAGTGAT-TCATC-TTATAAT-GAAATAGCATCCAGAAGTCA-G  46

seq1  CTGT-GATCTTGAAACTTAAATGAGTGTTTATCCAGCATGTCTGGCAACA  99
      |||| |||| |||| ||  ||||||   ||||||||||||||||||||| 
seq2  CTGTGGATC-TGAACCT--AATGAGGTGTTATCCAGCATGTCTGGCAAC-  92

seq1  AAAGACTCCAAAAGAAAATCATTAAAACTATTATTTTGACAATTTAGCTG  149
      ||||||||  ||||||||||||  |||||||   ||||||||||||||||
seq2  AAAGACTC--AAAGAAAATCAT--AAACTAT--ATTTGACAATTTAGCTG  136

seq1  CTTTAACTCGGTTTTACATACTAATTCCTGTTCATTTAAAGAAAAACTTG  199
      ||||||||||| |||||||||||||||||||||| |||||| ||||||||
seq2  CTTTAACTCGGGTTTACATACTAATTCCTGTTCA-TTAAAG-AAAACTTG  184

seq1  TTTCACTGTGTATGTTTCTATGACACATTCCTGTCCCTGACC-TTCACTA  248
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TTTCACTGTGTATGTTTCTATGACACATTCCTGT-CCTGACCTTTCACTA  233

seq1  ATTATTGATCAGCTTTAAAACTTCAGTCAATATTACTCAATAAATGCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGATCAGCTTTAAAACTTCAGTCAATATTACTCAATAAATGCCAA  283

seq1  CTTTCATGAGAGGCCTTTCTAAATCTGCCTTGTTTATTTTTTTCTTTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGAGAGGCCTTTCTAAATCTGCCTTGTTTATTTTTTTCTTTTAC  333

seq1  TCTTTCTTAACATCAGAGGAGAGATGACCCATCCCCTTCTCCATTTTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTAACATCAGAGGAGAGATGACCCATCCCCTTCTCCATTTTTTT  383

seq1  CCACCATGAAAGAATCTGTTAGTTTCTTTTTTTTTTTTTACCAAAAATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGAAAGAATCTGTTAGTTTCTTTTTTTTTTTTTACCAAAAATAC  433

seq1  CATTGAAATATTAAAGCTTTCATATAAAAAATAAATGGTAGGTAAATCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAATATTAAAGCTTTCATATAAAAAATAAATGGTAGGTAAATCAC  483

seq1  CAAGATCAATTGCCAGAGGACAGTCATCTTCCATTATCATTATGAAATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAATTGCCAGAGGACAGTCATCTTCCATTATCATTATGAAATGC  533

seq1  AGCCCATAAGCAAAAGTATCAGGGAAAAAAGGTAATAGATGCCCTGAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATAAGCAAAAGTATCAGGGAAAAAAGGTAATAGATGCCCTGAGGA  583

seq1  ACAGTCACTGTGTATAATAAAGATTTTATTTTAAAAGTGTTAAGATAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACTGTGTATAATAAAGATTTTATTTTAAAAGTGTTAAGATAAAT  633

seq1  AACACATACTCCACAACATCACTGTTCTGGGAAATCATTTCTTTTTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATACTCCACAACATCACTGTTCTGGGAAATCATTTCTTTTTAGAA  683

seq1  TATGAATTCTAACTGGCACATCTCGTTCCACCTGCTCCTGGGGGCTTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCTAACTGGCACATCTCGTTCCACCTGCTCCTGGGGGCTTTTA  733

seq1  CTGAGCTGGCTTTTAATTCTGCAGTTTCAGTCTGTGGCCTCCTGTCTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGGCTTTTAATTCTGCAGTTTCAGTCTGTGGCCTCCTGTCTTTG  783

seq1  ACATACTTCTTGAGACTGGATGTGTGGTGGAATGCAAAGACCATCAATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCTTGAGACTGGATGTGTGGTGGAATGCAAAGACCATCAATAT  833

seq1  GTGTGGTTTGTAACCTAACTGCTGATGAAATAGAGTTGCTTAGAATTCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTGTAACCTAACTGCTGATGAAATAGAGTTGCTTAGAATTCCC  883

seq1  TAGGGCATCTGATTCAGACCAGAATTACATTGGTCAGTAAAATTCAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCATCTGATTCAGACCAGAATTACATTGGTCAGTAAAATTCAAATA  933

seq1  GTTCACTGCTTTCCCTTGGTAATTACTGGGCCTTAACCAGAAATTGGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGCTTTCCCTTGGTAATTACTGGGCCTTAACCAGAAATTGGTAT  983

seq1  GATAAGAGTGAAACACTTTTTTTAGGATAATGATTGATTTCCATAAAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGTGAAACACTTTTTTTAGGATAATGATTGATTTCCATAAAGAT  1033

seq1  GAGTACTTCAACAATTTTCAGTATGTAGTTGCTGGGGCGGAGGGTGGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTCAACAATTTTCAGTATGTAGTTGCTGGGGCGGAGGGTGGGTG  1083

seq1  GCCACTAATTAGTTTTACCGTTTTCAGCAGATGTTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAATTAGTTTTACCGTTTTCAGCAGATGTTGAATTC  1124


seq1: chr14_109189755_109190884
seq2: B6Ng01-292A12.g_63_1215

seq1  GAATTCCAGGATGGAGAAGGGGGAATGGATGGGTATGGGAAACACCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATGGAGAAGGGGGAATGGATGGGTATGGGAAACACCCTCA  50

seq1  AAGAAGCAGGGTGAGAGGGGATATAATAGGGGGTTCTCAGAAGGGGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAGGGTGAGAGGGGATATAATAGGGGGTTCTCAGAAGGGGAACC  100

seq1  AGGAAAGGGGATAACATTTGAAATGCAAATAAAGAAAATTTCTAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGGATAACATTTGAAATGCAAATAAAGAAAATTTCTAATAAAA  150

seq1  TATTTCAAAAGAGAACAAATATAAAGCATGCATTTCTACTCCTATCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAAAGAGAACAAATATAAAGCATGCATTTCTACTCCTATCAACT  200

seq1  TTGCATTCCTTGTGTGCCAACATTTAAAAAGTTAAAATGTAGTTCGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCCTTGTGTGCCAACATTTAAAAAGTTAAAATGTAGTTCGTTGA  250

seq1  TTGTCTAATGTCATAGGAAAATTGATTATCTTCAACATTTAGACACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATGTCATAGGAAAATTGATTATCTTCAACATTTAGACACAGTT  300

seq1  AAAACATTCATTAGGCACATCCCCATTGTTTCCTTGACATTGTTTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCATTAGGCACATCCCCATTGTTTCCTTGACATTGTTTCTGAG  350

seq1  AAGTTTCTAGTTCTCTTACAATTATCTCCTTTTACATCTTTTGGCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTAGTTCTCTTACAATTATCTCCTTTTACATCTTTTGGCACAGA  400

seq1  AGAATGTTGTTAGTAAGGTCTAAGTGTCTTATAATGCACAGTAATTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTGTTAGTAAGGTCTAAGTGTCTTATAATGCACAGTAATTGTTG  450

seq1  TTCTTAATAAAGGTCATTGTGTATTTAGGCAAAATAAACACAGTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATAAAGGTCATTGTGTATTTAGGCAAAATAAACACAGTGATTTT  500

seq1  TTTTCTGACATTTACTTTCTACTGAACAAAATCAAATAAACCTGCAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGACATTTACTTTCTACTGAACAAAATCAAATAAACCTGCAAGTA  550

seq1  TCTTTTTGTAAATAAAATGACAAGATGGAGTGAATAGAATAGTATATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTAAATAAAATGACAAGATGGAGTGAATAGAATAGTATATTTG  600

seq1  GAAATTAGGACATTCTATTTTAGATAGCCTTTTCAGGTTACTTGGAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGGACATTCTATTTTAGATAGCCTTTTCAGGTTACTTGGAATAT  650

seq1  AAATTTCTTACATTACACTGAATCTTTCATCTTGACTCAACAAAATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTACATTACACTGAATCTTTCATCTTGACTCAACAAAATTCAG  700

seq1  ATCATTAAAGGAATGAAAACCTATGTTCTATTGCCGTTACTGTGTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAAGGAATGAAAACCTATGTTCTATTGCCGTTACTGTGTGAAGA  750

seq1  GATTGTTAAATTGGTTGTTATCTTCCTGTAACTTGTCAAACACCCTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTAAATTGGTTGTTATCTTCCTGTAACTTGTCAAACACCCTCACT  800

seq1  GTGTGTGCCATGCCACAATCAGAGGTTCCTGAACTCAGTGTGATG-AAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTGTGCCATGCCACAATCAGAGGTTCCTGAACTCAGTGTGATGAAAAA  850

seq1  GGTT-CCTTG-TTTAAATAGGTATAAGAAACCT-AAAGGATCCAAA-GAC  895
      |||| ||||| |||||||||||||||||||||| |||||||||||| |||
seq2  GGTTCCCTTGTTTTAAATAGGTATAAGAAACCTAAAAGGATCCAAATGAC  900

seq1  AACTGC-CAGTGG-AGAC-AC--AACAAGAAATCAAAAGTG-CTAATC-T  938
      |  ||| |||||| |||| ||  | |||||||||||||||| |||||| |
seq2  ACTTGCTCAGTGGTAGACTACTAACCAAGAAATCAAAAGTGCCTAATCTT  950

seq1  TCCTGGGCTAGATGCCAGC-AGC-TTACTCAGCCT-CTGCTTGCAGT-GT  984
      |||||| |||||||||||| ||| ||||||||||| ||||||||||| ||
seq2  TCCTGGCCTAGATGCCAGCTAGCTTTACTCAGCCTCCTGCTTGCAGTGGT  1000

seq1  TAGTCCAGCCCCCATACG-TGGGTGTAGGAAGCACAGTTTAGAATAAGTA  1033
      |||||||||||||||||| ||||||||| |||||||||||||||  ||||
seq2  TAGTCCAGCCCCCATACGTTGGGTGTAGAAAGCACAGTTTAGAAATAGTA  1050

seq1  -TCAGAGATAACAGGATTGTCCAAAACTT-GGGCCAATTTTCCTCATTCA  1081
       |||||||| ||||||||||||||||||| |||||||||||||||| || 
seq2  TTCAGAGATTACAGGATTGTCCAAAACTTCGGGCCAATTTTCCTCAATCC  1100

seq1  AAGAAAATGTCTGACCCTT-TCTAGT-CCCCTGGAA--TGCCAGGGGTGG  1127
      ||||||||||||||||||| |||||| |||||||||   |||   |||||
seq2  AAGAAAATGTCTGACCCTTATCTAGTCCCCCTGGAAATGGCCTATGGTGG  1150

seq1  GAA  1130
      |||
seq2  GAA  1153


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