BAC Information

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BAC

Clone NameB6Ng01-293A10
Chromosome14 (Build37)
Map Location 21,672,546 - 21,833,071
singlet/doubletdoublet
Overlap geneEG620119, Vcl
Upstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau
Downstream geneAp3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293A10.bB6Ng01-293A10.g
ACCGA089509GA089510
length1,0891,138
definitionB6Ng01-293A10.b B6Ng01-293A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,672,546 - 21,673,547)(21,831,905 - 21,833,071)
sequence
gaattctgtgtttagatctgtactccatttttaactgaattgcttagttt
gttgatgtctgctttttaagttctttatatattttagatattagccctct
gtcgatgtagaatttgtgaagatctttttcccattctgtactacagagct
gtagtaataaaaacaacatgatactggcattaaaaacagacaggttgatc
agtggaattgaacggaaaacccagacctacatccacacacctgtggatgc
ctgattttttttttttaatgaagaagccatacatagacaatggaaaaaaa
gaagcagcttcaacaaatggtgccggtgcaactggatgtcggcatggaga
cgaacacaaataggcccatacgtgtcaccctgcacaaaactcaagtccaa
gtggatcaaagacctcaatataaaaccagagacatgaacccaataaagga
gaaagtgggggaattttgaatgcattggcacagaagacagcttccggaac
aaccgatagcagtcactaagatcaacaattaattcgtaggatctcatgaa
actgaaaaccgtctgtaaagcaaagaccactgtcaatagggaaaggtaat
cacaccattctcactctccattgcaatgtggtcactcttgccattcctgg
ccccagaatattatcaaaagtgtcccagaatgctccaaggtagaaggcat
caaaagttctctccaagtctcctaagtcaagaccttcctccgtacctctc
tgagccttttctctctctttcactgatatctctcatggctgaggaaacca
ggagaaacaacagaatggagacattttgacaagcatttatctaaagcagt
agttttagccaggcatggtggtactatgagggttcaggaatcgccacaca
aaccatatgaacacccatctcagttaagcaataatactttatagaatgca
ataatactttatagaatgtttggagttcaggactcagaaccctaatgtgg
tacaagtctgttctcagagcaggctttttatatgaaaaattaagattcaa
agtcaggaggcaagggtggaggcagtacttacattttga
gaattctagaacagccaaggctgttacacagagaaaccctgtcttgataa
aaacaaaaacaaaacaaaggaaaggaaaggacagggtatttgtaataatg
gtgccactgtgtgaattagcaaagctacacatcaatcttatgggtgtaaa
agaagaggcacttaacctatccagaaagcaaagaaaacaataaagaaggg
agaggaaccacgcagaaaagaagctggaagaaattagggggaggaagcaa
ggacacagaagggccaagtatacaggcattattccagacacgtagttact
gcagcagcatggagtaagagcctgcagcctagatgaaaccaacatacaaa
gaacagcaagagccagaccacaggggctccgggacatagcacattggtag
agtgcttgcctagcgtgcatgaagtcctggatctgatccacaactcccac
aagccagctattatggcacaatctatgaggccagccctgaggatgaccag
gaggctcaaggctatcctcagactccaaggttagcctggggtacatgata
acaaacaaacatttaaaaaaaaaaaaaaggccctatcacaaagctccatc
tttatcctggtgccactgagagatcaggagatcagggcttcatgaactct
cctctctcccaattggtggcttagtaaatgattcaaaggcaacagagcta
agcaaccagttagggagtggagaacaagaataggatttaaactgtggcaa
tatgataggattcaaaatgattgtgatataaaattaatatgcctgagtta
cctgttggtattaaaggactaggaaaagacactagaaacaaacaatctca
aagaaaaattcaccatatgctaaaggaacctataaatctagatcctaaat
agacaagacaagcagatagctgaaatttagagtctgaaattcagaagcct
ggatgagagtagcaaattcaccctagtgtaagagacccggactgacactt
ctacttcagccagaaagagaatgaagtcactagagcaggaacacaacatt
tacccgaatataccaactgatgcttcaaattttctctctgctactagtag
ctacaagcacacgctctgtcttggtccttcacatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21672546_21673547
seq2: B6Ng01-293A10.b_133_1135

seq1  GATATTAGCCCTCTGTCGATGTAGAATTTGTGAAGATCTTTTTCCCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGCCCTCTGTCGATGTAGAATTTGTGAAGATCTTTTTCCCATTC  50

seq1  TGTACTACAGAGCTGTAGTAATAAAAACAACATGATACTGGCATTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACAGAGCTGTAGTAATAAAAACAACATGATACTGGCATTAAAAA  100

seq1  CAGACAGGTTGATCAGTGGAATTGAACGGAAAACCCAGACCTACATCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGTTGATCAGTGGAATTGAACGGAAAACCCAGACCTACATCCAC  150

seq1  ACACCTGTGGATGCCTGATTTTTTTTTTTTAATGAAGAAGCCATACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTGGATGCCTGATTTTTTTTTTTTAATGAAGAAGCCATACATAG  200

seq1  ACAATGGAAAAAAAGAAGCAGCTTCAACAAATGGTGCCGGTGCAACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAAAAAAAGAAGCAGCTTCAACAAATGGTGCCGGTGCAACTGGA  250

seq1  TGTCGGCATGGAGACGAACACAAATAGGCCCATACGTGTCACCCTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGCATGGAGACGAACACAAATAGGCCCATACGTGTCACCCTGCACA  300

seq1  AAACTCAAGTCCAAGTGGATCAAAGACCTCAATATAAAACCAGAGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGTCCAAGTGGATCAAAGACCTCAATATAAAACCAGAGACATG  350

seq1  AACCCAATAAAGGAGAAAGTGGGGGAATTTTGAATGCATTGGCACAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATAAAGGAGAAAGTGGGGGAATTTTGAATGCATTGGCACAGAAG  400

seq1  ACAGCTTCCGGAACAACCGATAGCAGTCACTAAGATCAACAATTAATTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCCGGAACAACCGATAGCAGTCACTAAGATCAACAATTAATTCG  450

seq1  TAGGATCTCATGAAACTGAAAACCGTCTGTAAAGCAAAGACCACTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTCATGAAACTGAAAACCGTCTGTAAAGCAAAGACCACTGTCAA  500

seq1  TAGGGAAAGGTAATCACACCATTCTCACTCTCCATTGCAATGTGGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGGTAATCACACCATTCTCACTCTCCATTGCAATGTGGTCACT  550

seq1  CTTGCCATTCCTGGCCCCAGAATATTATCAAAAGTGTCCCAGAATGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTCCTGGCCCCAGAATATTATCAAAAGTGTCCCAGAATGCTCC  600

seq1  AAGGTAGAAGGCATCAAAAGTTCTCTCCAAGTCTCCTAAGTCAAGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAAGGCATCAAAAGTTCTCTCCAAGTCTCCTAAGTCAAGACCTT  650

seq1  CCTCCGTACCTCTCTGAGCCTTTTCTCTCTCTTTCACTGATATCTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGTACCTCTCTGAGCCTTTTCTCTCTCTTTCACTGATATCTCTCAT  700

seq1  GGCTGAGGAAACCAGGAGAAACAACAGAATGGAGACATTTTGACAAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGAAACCAGGAGAAACAACAGAATGGAGACATTTTGACAAGCAT  750

seq1  TTATCTAAAGCAGTAGTTTTAGCCAGGCATGGTGGTACTATGA-GGTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATCTAAAGCAGTAGTTTTAGCCAGGCATGGTGGTACTATGAGGGTTCA  800

seq1  GGAATCGCCACACAAACCATATGAACACCCATCTCAGTTAAGCAATAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCGCCACACAAACCATATGAACACCCATCTCAGTTAAGCAATAATA  850

seq1  CTTTATAGAATGCAATAATACTTTATAGAATGTTT-GAGTTCAGGACTCA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CTTTATAGAATGCAATAATACTTTATAGAATGTTTGGAGTTCAGGACTC-  899

seq1  AGAACCTAAATGTGGTACAAGTCTGTTCTCAGAGCAGGCTTTTTATATGA  948
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTAATGTGGTACAAGTCTGTTCTCAGAGCAGGCTTTTTATATGA  949

seq1  AAAA-TAAGATTCAAAAGTTCAGAAGGCAAGGGTGGAGGCAGTAC-TACA  996
      |||| |||||||||||   |||| ||||||||||||||||||||| ||||
seq2  AAAATTAAGATTCAAA--GTCAGGAGGCAAGGGTGGAGGCAGTACTTACA  997

seq1  TTTTGA  1002
      ||||||
seq2  TTTTGA  1003

seq1: chr14_21831905_21833071
seq2: B6Ng01-293A10.g_66_1203 (reverse)

seq1  CAGCATGTGAAAGGACCAAGGACAAGAAGCGTGTGCTTTTGTAGCCTTTA  50
      ||||||||| ||||||||| ||||   |||||||||  |||||||   ||
seq2  CAGCATGTG-AAGGACCAA-GACA--GAGCGTGTGC--TTGTAGC---TA  41

seq1  TTTAGTAGCAGAGGAGAAAAATTTGGAGGGCCATCCAGTGTGTATTATTT  100
        |||||||||| ||| |||||||| ||   ||| ||||  ||||   ||
seq2  -CTAGTAGCAGA-GAG-AAAATTTGAAG---CAT-CAGTTGGTAT--ATT  82

seq1  TGGGTAAATGTTGTGTTCTTGCTTCTTAGTGACTCTCCTTTCTCTTTCTG  150
       ||||||||||||||||| ||||   ||||||  || | |||||||||||
seq2  CGGGTAAATGTTGTGTTCCTGCT--CTAGTGA--CTTCATTCTCTTTCTG  128

seq1  GCTGAGGTTAGAAGGTGTTCAGTTCCGGGTCTCCTTACACTAGGGTG-AT  199
      ||||| | ||||| ||| |||| ||||||||| |||||||||||||| ||
seq2  GCTGAAG-TAGAA-GTG-TCAG-TCCGGGTCT-CTTACACTAGGGTGAAT  173

seq1  TTGCTACCTTCTCATCCCAGGCTTCTGAATTTCAGACTCCTAAATTTCAG  249
      |||||||  |||||| |||||||||||||||||||||| |||||||||||
seq2  TTGCTAC--TCTCAT-CCAGGCTTCTGAATTTCAGACT-CTAAATTTCAG  219

seq1  CTATCTGCTTGTCTTGTCTATTTAGGATCTAGATTTATAGGTTCC-TTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATCTGCTTGTCTTGTCTATTTAGGATCTAGATTTATAGGTTCCTTTAG  269

seq1  CATATGGTGAATTTTTCTTTGAGATTGTTTGTTTCTAGTGTCTTTTCCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTGAATTTTTCTTTGAGATTGTTTGTTTCTAGTGTCTTTTCCTA  319

seq1  GTCCTTTAATACCAACAGGTAACTCAGGCATATTAATTTTATATCACAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAATACCAACAGGTAACTCAGGCATATTAATTTTATATCACAAT  369

seq1  CATTTTGAATCCTATCATATTGCCACAGTTTAAATCCTATTCTTGTTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAATCCTATCATATTGCCACAGTTTAAATCCTATTCTTGTTCTC  419

seq1  CACTCCCTAACTGGTTGCTTAGCTCTGTTGCCTTTGAATCATTTACTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTAACTGGTTGCTTAGCTCTGTTGCCTTTGAATCATTTACTAAG  469

seq1  CCACCAATTGGGAGAGAGGAGAGTTCATGAAGCCCTGATCTCCTGATCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATTGGGAGAGAGGAGAGTTCATGAAGCCCTGATCTCCTGATCTC  519

seq1  TCAGTGGCACCAGGATAAAGATGGAGCTTTGTGATAGGGCCTTTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCACCAGGATAAAGATGGAGCTTTGTGATAGGGCCTTTTTTTTT  569

seq1  TTTTTAAATGTTTGTTTGTTATCATGTACCCCAGGCTAACCTTGGAGTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGTTTGTTTGTTATCATGTACCCCAGGCTAACCTTGGAGTCT  619

seq1  GAGGATAGCCTTGAGCCTCCTGGTCATCCTCAGGGCTGGCCTCATAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAGCCTTGAGCCTCCTGGTCATCCTCAGGGCTGGCCTCATAGATT  669

seq1  GTGCCATAATAGCTGGCTTGTGGGAGTTGTGGATCAGATCCAGGACTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATAATAGCTGGCTTGTGGGAGTTGTGGATCAGATCCAGGACTTCA  719

seq1  TGCACGCTAGGCAAGCACTCTACCAATGTGCTATGTCCCGGAGCCCCTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCTAGGCAAGCACTCTACCAATGTGCTATGTCCCGGAGCCCCTGT  769

seq1  GGTCTGGCTCTTGCTGTTCTTTGTATGTTGGTTTCATCTAGGCTGCAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCTCTTGCTGTTCTTTGTATGTTGGTTTCATCTAGGCTGCAGGC  819

seq1  TCTTACTCCATGCTGCTGCAGTAACTACGTGTCTGGAATAATGCCTGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCCATGCTGCTGCAGTAACTACGTGTCTGGAATAATGCCTGTAT  869

seq1  ACTTGGCCCTTCTGTGTCCTTGCTTCCTCCCCCTAATTTCTTCCAGCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCCCTTCTGTGTCCTTGCTTCCTCCCCCTAATTTCTTCCAGCTTC  919

seq1  TTTTCTGCGTGGTTCCTCTCCCTTCTTTATTGTTTTCTTTGCTTTCTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCGTGGTTCCTCTCCCTTCTTTATTGTTTTCTTTGCTTTCTGGA  969

seq1  TAGGTTAAGTGCCTCTTCTTTTACACCCATAAGATTGATGTGTAGCTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAAGTGCCTCTTCTTTTACACCCATAAGATTGATGTGTAGCTTTG  1019

seq1  CTAATTCACACAGTGGCACCATTATTACAAATACCCTGTCCTTTCCTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCACACAGTGGCACCATTATTACAAATACCCTGTCCTTTCCTTTC  1069

seq1  CTTTGTTTTGTTTTTGTTTTTATCAAGACAGGGTTTCTCTGTGTAACAGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTTTTTGTTTTTATCAAGACAGGGTTTCTCTGTGTAACAGC  1119

seq1  CTTGGCTGTTCTAGAATTC  1167
      |||||||||||||||||||
seq2  CTTGGCTGTTCTAGAATTC  1138