BAC Information

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BAC

Clone NameB6Ng01-295C02
Chromosome14 (Build37)
Map Location 104,303,299 - 104,448,373
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295C02.bB6Ng01-295C02.g
ACCGA091079GA091080
length1,032697
definitionB6Ng01-295C02.b B6Ng01-295C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,303,299 - 104,304,321)(104,447,681 - 104,448,373)
sequence
gaattcatttgtgttggcctgctaggaaggctagccgaaacagtgaggct
gagggagcttacacaacggaaatcagttatcacagtgttctggagaatgg
agtgcagagtgaacaggtcagcaggtttgattccccccccccccccccca
gcattctcaggatccctgcaagtttcctgtgtgctcgctcctggcgtttc
ttccttccctcaactgagagcagatccgacaatctcaagtcctgccttgc
tatgacattccatctccgttaccgccgctttgaagtcctgatcttcaaaa
aatcatagcgacattggggatttcaacttttatcagctggattccagggg
gtgtaattcgtcccataacagcatttttggagatatttacttagaataca
ttcctgagagttagaagtaagcaccctcagctttaggagggtggctttcc
atatttatccaactgttttgcattctgcaggcactgaggagccttccaag
tacattcacattttggtattatcacgtccccttttgtttttgttctcatc
atagagcccttgctggcctggaattcactgtctccattagacttgtctag
aacttgcacagatgaccggcaactccttctgcaggccaatggctgggatt
gaggctgtgccctctctcatgcagctgctattaccattttagcccctctg
aaatgtttatagacccttatgggctagttagcatcttcaaatgatcatta
aaatgtactgtttttcatgctaatttcatttggatatcattattctgagt
tgtctgttgaagattttgggctgttttatgtcattgtttgccactttcct
attggtttgtaagcatttccacatatcctggaaatcacatcatctttgta
gaatatgtgactattaactatctttaagtttgtcaattaccctgccatgt
acccttaatcatgttttcatctttataaagtcttcattttaatagaggaa
aaataagtttacaagctttatttgaaggtttt
gaattctatcccagatggttcctgttagaccttctgtgtttgtattcctc
tgttttgtgtaagaatccagtaacctctttgtatcttgctggtgtgtcac
ccaacttccctattttctcctgtataaaaagtttgatgctcgatttgaca
aattacattcagattctacacaacctctcctgtgtgcatctgtctgtcat
tccatccaacgctttgcccacctgccccagagacccgttccatgcagaca
aagggatccagagggtctgcaacaagcaagaaactccttattctttagag
ataacgtaatgtatctgaaactgtgatgtttcaagggttatggcccactc
acaaatattttctgaaccctgacatattttaagtagggttatacaaagat
atgtcatggtgtctgctcaatcattgcaattttttttatggagaaacacc
tggccctccctccccctcttgctaatagatatatgagaatatcccaagac
cactggaaaagtattttgaaaagttaagtcttaaagagtggattcaaatt
ttgcatctgccagttttctactatgttttttttttggggggggggtagta
aaatgtcttaatttttaatgagcctcttacttgaaagagaaaattttgtt
tggtcctcaaatagtttggttctatgaattctccttttctctcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104303299_104304321
seq2: B6Ng01-295C02.b_48_1074

seq1  GAATTCATTTGTGTTGGCCTGCTAGGAAGGCTAGCCGAAACAGTGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTGTTGGCCTGCTAGGAAGGCTAGCCGAAACAGTGAGGCT  50

seq1  GAGGGAGCTTACACAACGGAAATCAGTTATCACAGTGTTCTGGAGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCTTACACAACGGAAATCAGTTATCACAGTGTTCTGGAGAATGG  100

seq1  AGTGCAGAGTGAACAGGTCAGCAGGTTTGATTCCCCCCCCCCCCCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGTGAACAGGTCAGCAGGTTTGATTCCCCCCCCCCCCCCCCCA  150

seq1  GCATTCTCAGGATCCCTGCAAGTTTCCTGTGTGCTCGCTCCTGGCGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCAGGATCCCTGCAAGTTTCCTGTGTGCTCGCTCCTGGCGTTTC  200

seq1  TTCCTTCCCTCAACTGAGAGCAGATCCGACAATCTCAAGTCCTGCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTCAACTGAGAGCAGATCCGACAATCTCAAGTCCTGCCTTGC  250

seq1  TATGACATTCCATCTCCGTTACCGCCGCTTTGAAGTCCTGATCTTCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATTCCATCTCCGTTACCGCCGCTTTGAAGTCCTGATCTTCAAAA  300

seq1  AATCATAGCGACATTGGGGATTTCAACTTTTATCAGCTGGATTCCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGCGACATTGGGGATTTCAACTTTTATCAGCTGGATTCCAGGGG  350

seq1  GTGTAATTCGTCCCATAACAGCATTTTTGGAGATATTTACTTAGAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTCGTCCCATAACAGCATTTTTGGAGATATTTACTTAGAATACA  400

seq1  TTCCTGAGAGTTAGAAGTAAGCACCCTCAGCTTTAGGAGGGTGGCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGAGTTAGAAGTAAGCACCCTCAGCTTTAGGAGGGTGGCTTTCC  450

seq1  ATATTTATCCAACTGTTTTGCATTCTGCAGGCACTGAGGAGCCTTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCCAACTGTTTTGCATTCTGCAGGCACTGAGGAGCCTTCCAAG  500

seq1  TACATTCACATTTTGGTATTATCACGTCCCCTTTTGTTTTTGTTCTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCACATTTTGGTATTATCACGTCCCCTTTTGTTTTTGTTCTCATC  550

seq1  ATAGAGCCCTTGCTGGCCTGGAATTCACTGTCTCCATTAGACTTGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCCTTGCTGGCCTGGAATTCACTGTCTCCATTAGACTTGTCTAG  600

seq1  AACTTGCACAGATGACCGGCAACTCCTTCTGCAGGCCAATGGCTGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCACAGATGACCGGCAACTCCTTCTGCAGGCCAATGGCTGGGATT  650

seq1  GAGGCTGTGCCCTCTCTCATGCAGCTGCTATTACCATTTTAGCCCCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGCCCTCTCTCATGCAGCTGCTATTACCATTTTAGCCCCTCTG  700

seq1  AAATGTTTATAGACCCTTATGGGCTAGTTAGCATCTTCAAATGATCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATAGACCCTTATGGGCTAGTTAGCATCTTCAAATGATCATTA  750

seq1  AAATGTACTGTTTTTCATGCTAATTTCATTTGGATATCATTATTCTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTGTTTTTCATGCTAATTTCATTTGGATATCATTATTCTGAGT  800

seq1  TGTCTGTTGAAGATTTTGGGCTGTTTTATGTCATTGTTTGCCACTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTGAAGATTTTGGGCTGTTTTATGTCATTGTTTGCCACTTTCCT  850

seq1  ATTGGTTTGTAAGCATTTCCACATATCCTGGAAATCACATCATCTTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTGTAAGCATTTCCACATATCCTGGAAATCACATCATCTTTGTA  900

seq1  GAATATGTGACTATTAACTATCTTT-AGTTTGTCAATTACCTTGCCATGT  949
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  GAATATGTGACTATTAACTATCTTTAAGTTTGTCAATTACCCTGCCATGT  950

seq1  A-CCTTAATCATGTTTTCATCTTTATAAAGTCTTCATTTTAATAGAG--A  996
      | |||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ACCCTTAATCATGTTTTCATCTTTATAAAGTCTTCATTTTAATAGAGGAA  1000

seq1  AAATAAG-TTACAAGCTTTATTTTGAAG  1023
      ||||||| |||||||||||| |||||||
seq2  AAATAAGTTTACAAGCTTTA-TTTGAAG  1027

seq1: chr14_104447681_104448373
seq2: B6Ng01-295C02.g_65_761 (reverse)

seq1  TTGTGAGAGAAAAGAAGAA-TCATAGAACCAAACTATTTGAGGACCAAAC  49
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TTGTGAGAGAAAAGGAGAATTCATAGAACCAAACTATTTGAGGACCAAAC  50

seq1  -AAATTTTCTC-TTCAAGTAAGAGGCTCATT-AAAATTAAGACATTTTAC  96
       |||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AAAATTTTCTCTTTCAAGTAAGAGGCTCATTAAAAATTAAGACATTTTAC  100

seq1  TACCCCCCCCCCAAAAAAAAAACATAGTAGAAAACTGGCAGATGCAAAAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCCCCCCAAAAAAAAAACATAGTAGAAAACTGGCAGATGCAAAAT  150

seq1  TTGAATCCACTCTTTAAGACTTAACTTTTCAAAATACTTTTCCAGTGGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCACTCTTTAAGACTTAACTTTTCAAAATACTTTTCCAGTGGTC  200

seq1  TTGGGATATTCTCATATATCTATTAGCAAGAGGGGGAGGGAGGGCCAGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATATTCTCATATATCTATTAGCAAGAGGGGGAGGGAGGGCCAGGT  250

seq1  GTTTCTCCATAAAAAAAATTGCAATGATTGAGCAGACACCATGACATATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCATAAAAAAAATTGCAATGATTGAGCAGACACCATGACATATC  300

seq1  TTTGTATAACCCTACTTAAAATATGTCAGGGTTCAGAAAATATTTGTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAACCCTACTTAAAATATGTCAGGGTTCAGAAAATATTTGTGAG  350

seq1  TGGGCCATAACCCTTGAAACATCACAGTTTCAGATACATTACGTTATCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATAACCCTTGAAACATCACAGTTTCAGATACATTACGTTATCTC  400

seq1  TAAAGAATAAGGAGTTTCTTGCTTGTTGCAGACCCTCTGGATCCCTTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATAAGGAGTTTCTTGCTTGTTGCAGACCCTCTGGATCCCTTTGT  450

seq1  CTGCATGGAACGGGTCTCTGGGGCAGGTGGGCAAAGCGTTGGATGGAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGAACGGGTCTCTGGGGCAGGTGGGCAAAGCGTTGGATGGAATG  500

seq1  ACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGAATGTAATTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGAATGTAATTTGT  550

seq1  CAAATCGAGCATCAAACTTTTTATACAGGAGAAAATAGGGAAGTTGGGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGAGCATCAAACTTTTTATACAGGAGAAAATAGGGAAGTTGGGTG  600

seq1  ACACACCAGCAAGATACAAAGAGGTTACTGGATTCTTACACAAAACAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGCAAGATACAAAGAGGTTACTGGATTCTTACACAAAACAGAG  650

seq1  GAATACAAACACAGAAGGTCTAACAGGAACCATCTGGGATAGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAACACAGAAGGTCTAACAGGAACCATCTGGGATAGAATTC  697