BAC Information

Click to search

BAC

Clone NameB6Ng01-296F14
Chromosome7 (Build37)14 (Build37)
Map Location 25,679,214 - 25,679,706106,018,607 - 106,019,210
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19
Downstream geneCd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296F14.bB6Ng01-296F14.g
ACCGA091982GA091983
length962604
definitionB6Ng01-296F14.b B6Ng01-296F14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,679,214 - 25,679,706)(106,018,607 - 106,019,210)
sequence
gaattcactctgtataccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggatcaaaggcgagcgccaccacacctgacta
aataaatcttaaataatcttaaggaataaggaaaaaaaaaaacgtataga
agaaaatcatccctagccagcgcctctgggataggtttgaacattgcaaa
gttaattgaacgactgttttatgcaaaaactgtcagggtttcacatgcac
tgtttcacttgataccaaacagtattaccctatctgtgttttaaggagca
gtatataggctcagggaaagaaataattgactcaaaatgatgtaaacaat
gatcacatagtgagagtggagattataattcagtgtctttcactgaaacc
catgttcttttttttttaaatttttttattaggtattttcctcatttaca
tttccaatgctatcccaaacgtcctccacaccctccccgacccactaccc
cacccacccactcccacttcttggccctggcgttcccctgtactgaggca
gataaagtttgcacaaccaatgggcctctctttccactgatggccaacta
gatacatatgcagctagagacacgagctccggggggtactggttagttca
tattgttgttccacctatagggttgcagatccctttagctccttgggtac
tttctctagctcctccattgggggccctgtgatccatccaatagctgact
gtgagcatccacttctgtgtttgctgggccccggcatagtctcacaagag
acagctatatcagggtcctttcagcaaaatcttgcttgtatatgcaatga
tgtcagcatttgggggatgattatgggatggatccccaggtatggcagtc
tctagatggtccatcctttgtctcagctccaaactttgtctctgtaattc
cttctatgggtg
gaattctctttatcatgctttctagaaagtcttagagtccttttcccccc
ttgagaaatagcccatacagttagtgtctaatgattaaacctttgccaca
taaacatttcccagaacaaacagatcgctaaatctagacaaactctctcg
gcctccagctgctgagcaaattgcctgcccaggatttgagagaacaggaa
ataggtactatgggagctggagggtctgccgggcaggaagtaggtactgt
gggagctggagggtctgccaggcaggaagtaggtactgtgggagctggag
catctgccgggcaggaagtaggtactgtgggaattggagggtctgccggg
caggaagtaggtactgtgggagctggagggtctgcccggcaggaatttgg
ataccctccaaaacagggacctccaccacctcggtctaagctgcatgatc
accgttgggccttcaaggaaattcatccatggactgatatttggagtcgc
aaggcaaacggaacatttaatacctcaatctcttcaaaggtggtacccag
aatatgcccatgatgccatttaatgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25679214_25679706
seq2: B6Ng01-296F14.b_498_991 (reverse)

seq1  TACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGAC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACAGAGACAAAGTTTGGAGCTGAGAC-AAAGGATGGACCATCTAGAGAC  49

seq1  TGCCATACCTGGGGATCCATCCCATAATCAGCCTCCAAACGTTGACACCA  100
      |||||||||||||||||||||||||||||| || ||||| | ||||| ||
seq2  TGCCATACCTGGGGATCCATCCCATAATCATCCCCCAAATGCTGACATCA  99

seq1  TTGCATACACCTTTTCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCT  150
      ||||||| ||      ||||||||||||||||||||||||||||||||||
seq2  TTGCATATAC-----AAGCAAGATTTTGCTGAAAGGACCCTGATATAGCT  144

seq1  GTCTCTTGTGAGACTATTCTTGGGCCTAGCAAACACAGAAGTGGATGCCC  200
      ||||||||||||||||| |  ||||| ||||||||||||||||||||| |
seq2  GTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGGATGCTC  194

seq1  ATAGTCATTTATAGGATGGATCACAGGGCCCCTAACGGAGGAGCTAGAGA  250
      | |||||  ||| ||||||||||||||||||| || ||||||||||||||
seq2  ACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGA  244

seq1  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAA  294

seq1  TATGAACTAACCAGTACCCCCCAGAGCTCATGACTCTAGCTGCATATGTA  350
      |||||||||||||||||||||| |||||| || |||||||||||||||||
seq2  TATGAACTAACCAGTACCCCCCGGAGCTCGTGTCTCTAGCTGCATATGTA  344

seq1  TCAGAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCATTGGTCT  400
      |           |||||  |||||||||||||||||||||||||||||  
seq2  T-----------CTAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGTTG  383

seq1  TGCAAATTTTATATGCCTAAGTACAGGGGAATGCCAGGGCCAAGAAGTGA  450
      |||||| ||||| ||||| |||||||||||| ||||||||||||||||| 
seq2  TGCAAACTTTATCTGCCTCAGTACAGGGGAACGCCAGGGCCAAGAAGTGG  433

seq1  GAGTGGG------------------GGGAAGGGCATGGGGGACTTTTGGG  482
      |||||||                  ||| ||||  ||| |||| ||||||
seq2  GAGTGGGTGGGTGGGGTAGTGGGTCGGGGAGGGTGTGGAGGACGTTTGGG  483

seq1  ATAGCATTGGA  493
      |||||||||||
seq2  ATAGCATTGGA  494

seq1: chr14_106018607_106019210
seq2: B6Ng01-296F14.g_70_673

seq1  GAATTCTCTTTATCATGCTTTCTAGAAAGTCTTAGAGTCCTTTTCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTATCATGCTTTCTAGAAAGTCTTAGAGTCCTTTTCCCCCC  50

seq1  TTGAGAAATAGCCCATACAGTTAGTGTCTAATGATTAAACCTTTGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATAGCCCATACAGTTAGTGTCTAATGATTAAACCTTTGCCACA  100

seq1  TAAACATTTCCCAGAACAAACAGATCGCTAAATCTAGACAAACTCTCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTCCCAGAACAAACAGATCGCTAAATCTAGACAAACTCTCTCG  150

seq1  GCCTCCAGCTGCTGAGCAAATTGCCTGCCCAGGATTTGAGAGAACAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCTGCTGAGCAAATTGCCTGCCCAGGATTTGAGAGAACAGGAA  200

seq1  ATAGGTACTATGGGAGCTGGAGGGTCTGCCGGGCAGGAAGTAGGTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACTATGGGAGCTGGAGGGTCTGCCGGGCAGGAAGTAGGTACTGT  250

seq1  GGGAGCTGGAGGGTCTGCCAGGCAGGAAGTAGGTACTGTGGGAGCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGGAGGGTCTGCCAGGCAGGAAGTAGGTACTGTGGGAGCTGGAG  300

seq1  CATCTGCCGGGCAGGAAGTAGGTACTGTGGGAGTTGGAGGGTCTGCCGGG  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCTGCCGGGCAGGAAGTAGGTACTGTGGGAATTGGAGGGTCTGCCGGG  350

seq1  CAGGAAGTAGGTACTGTGGGAGCTGGAGGGTCTGCCCGGCAGGAATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTAGGTACTGTGGGAGCTGGAGGGTCTGCCCGGCAGGAATTTGG  400

seq1  ATACCCTCCAAAACAGGGACCTCCACCACCTCGGTCTAAGCTGCATGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCCAAAACAGGGACCTCCACCACCTCGGTCTAAGCTGCATGATC  450

seq1  ACCGTTGGGCCTTCAAGGAAATTCATCCATGGACTGATATTTGGAGTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTGGGCCTTCAAGGAAATTCATCCATGGACTGATATTTGGAGTCGC  500

seq1  AAGGCAAACGGAACATTTAATACCTCAATCTCTTCAAAGGTGGTACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACGGAACATTTAATACCTCAATCTCTTCAAAGGTGGTACCCAG  550

seq1  AATATGCCCATGATGCCATTTAATGTGTGTGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCCATGATGCCATTTAATGTGTGTGTGTGTGTGTGTGTGTGTGT  600

seq1  GTGT  604
      ||||
seq2  GTGT  604