BAC Information

Click to search

BAC

Clone NameB6Ng01-297A04
Chromosome14 (Build37)
Map Location 97,862,333 - 97,962,213
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297A04.bB6Ng01-297A04.g
ACCGA092477GA092478
length1,1491,173
definitionB6Ng01-297A04.b B6Ng01-297A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,862,333 - 97,863,481)(97,961,034 - 97,962,213)
sequence
gaattctatatcaagagagtgaaacaatgtctcagccaagagttcaaggg
aagataggctccatagcagcctggccttcaaaaagaagaatcaacacatt
tctttcttatatttactgtaaaatgttataatatatgatatggtatggta
tagatgaatagaaaaacaaaataataaaaatgtttacattatatttctaa
ataatataaggacaaagtcatagggtagtttgtatgagtgactcatattt
ttctttattttgaatctatgtaaaataattgacacaaactgtaccatcta
gttctcagagatagtaatgatgtgatttctacaaatacagaggagtcttt
caggttgaggggcaaaaaattttttttcctatgtgcccatgtgtgttcat
gctttggagaaaggaaaataaaatgtactatgtatgtgcttcaatgtatc
tccttataataatattttttctaaattttatttttgattatttgtttact
catttgtgagattgcagtctagtatttaattacaatatttgaaataaaaa
tattttaattcctttgttgtcctccctcccccaagcccttttatataact
ctcattcttcaaattcatggcctatttttattcattaatttttttgcatg
tatgtatttgaatgcacacatatacagaaatatttacatattctaaaata
taaactgctgagtcaatataatgttatttatatgggtattttgagggctt
gccatttgcacttgacagcatactcgaatgctctttcctggggagtattg
ctttaatttacccattctaattcagtatttatttacctgaaatagagaca
atataaaaatcatgaaatattaacaaatgtgttaattggtatatgttgcc
tttctatatatgtagttgagtaggaactcaaataaatggaggttgtaaat
aaatttgcttgtaatcatcatccaatcgacagagttcctcattgtttatc
ataatctattatctttggaaatcgtcaatattcttacatttctgttacaa
caaaatttaaaacatatacattatttattaacttaatatctattgaaatt
ttggattactatactagtagaaaaagcttacttgttgctttgaatttca

gaattccatttcttcaaaactggagatcataggaacaagagctcttcctt
aagcttttgatatgtgcaatttgtttctctgatcgctctcattaaagtta
tctccctcccagtgtttacaaaaaggctacaaataccaatcacagagaac
agtaaaacacagaactgtgggtttctcacattttgaagaagttgagtcag
gaaatttaaattaggaaaacctaatttggcctatatgcagaatccaggtt
ccatttcacagtaccttcctaagtaactttcccatttagcaaatgccaga
tatggaagatttaatatagatcttcatcgactctcaatctatgtacaaaa
cacaaaacaaattgaaaatatcacaaggtacaactgtatctcacaaatta
tttttagttccttctgagggctgcagctcactattcctgcctagcattct
gggaacgtatcagatcacgtgactggcctggataaatatacagtactgaa
cttcatagaaaatgaacagactatgttttggactatatatgtacacacac
acacacatactcaataaccattagtggagaaaaaagaagctacaaattta
gaggagagtgggcaggggtgtgtgtcagagttgggagaaaggaaagggaa
ggaagaaatattgcaagtatatcacaatctcgaaattaaaaataaagcta
cagtttctaatgaatacatatcactttcacactgaaatataatgtctgaa
aactatgccatcattagttataggaaagctgtaattcccttctgatatgt
gtagagcgtctatttcatttccaacattgatgagaagcatgggtattcaa
gacagggcttcttcgtgtagccctagaattccctgaactagcacaaggct
agccttgaaattagcaatctgcctctgcctggcaagggactgggattaca
ggaatataccaccaacaccaccacaccctgttgaaaaagagaacaataag
ccatattttgacttattagaggaaactgaaaatgcccagcatttttactt
tgattttcctgcttaccctctaacatcgtgcagtacctctgtaggtgata
ggttagttaggagttctttccaagtccttaacttgctgaagtcattgaaa
taaccacggcggtgccacctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_97862333_97863481
seq2: B6Ng01-297A04.b_47_1195

seq1  GAATTCTATATCAAGAGAGTGAAACAATGTCTCAGCCAAGAGTTCAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCAAGAGAGTGAAACAATGTCTCAGCCAAGAGTTCAAGGG  50

seq1  AAGATAGGCTCCATAGCAGCCTGGCCTTCAAAAAGAAGAATCAACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGCTCCATAGCAGCCTGGCCTTCAAAAAGAAGAATCAACACATT  100

seq1  TCTTTCTTATATTTACTGTAAAATGTTATAATATATGATATGGTATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTATATTTACTGTAAAATGTTATAATATATGATATGGTATGGTA  150

seq1  TAGATGAATAGAAAAACAAAATAATAAAAATGTTTACATTATATTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATAGAAAAACAAAATAATAAAAATGTTTACATTATATTTCTAA  200

seq1  ATAATATAAGGACAAAGTCATAGGGTAGTTTGTATGAGTGACTCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAGGACAAAGTCATAGGGTAGTTTGTATGAGTGACTCATATTT  250

seq1  TTCTTTATTTTGAATCTATGTAAAATAATTGACACAAACTGTACCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTTGAATCTATGTAAAATAATTGACACAAACTGTACCATCTA  300

seq1  GTTCTCAGAGATAGTAATGATGTGATTTCTACAAATACAGAGGAGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGAGATAGTAATGATGTGATTTCTACAAATACAGAGGAGTCTTT  350

seq1  CAGGTTGAGGGGCAAAAAATTTTTTTTCCTATGTGCCCATGTGTGTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGAGGGGCAAAAAATTTTTTTTCCTATGTGCCCATGTGTGTTCAT  400

seq1  GCTTTGGAGAAAGGAAAATAAAATGTACTATGTATGTGCTTCAATGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAGAAAGGAAAATAAAATGTACTATGTATGTGCTTCAATGTATC  450

seq1  TCCTTATAATAATATTTTTTCTAAATTTTATTTTTGATTATTTGTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATAATAATATTTTTTCTAAATTTTATTTTTGATTATTTGTTTACT  500

seq1  CATTTGTGAGATTGCAGTCTAGTATTTAATTACAATATTTGAAATAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGAGATTGCAGTCTAGTATTTAATTACAATATTTGAAATAAAAA  550

seq1  TATTTTAATTCCTTTGTTGTCCTCCCTCCCCCAAGCCCTTTTATATAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATTCCTTTGTTGTCCTCCCTCCCCCAAGCCCTTTTATATAACT  600

seq1  CTCATTCTTCAAATTCATGGCCTATTTTTATTCATTAATTTTTTTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTCAAATTCATGGCCTATTTTTATTCATTAATTTTTTTGCATG  650

seq1  TATGTATTTGAATGCACACATATACAGAAATATTTACATATTCTAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTGAATGCACACATATACAGAAATATTTACATATTCTAAAATA  700

seq1  TAAACTGCTGAGTCAATATAATGTTATTTATATGGGTATTTTGAGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGCTGAGTCAATATAATGTTATTTATATGGGTATTTTGAGGGCTT  750

seq1  GCCATTTGCACTTGACAGCATACTCGAATGCTCTTTCCTGGGGAGTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCACTTGACAGCATACTCGAATGCTCTTTCCTGGGGAGTATTG  800

seq1  CTTTAATTTACCCATTCTAATTCAGTATTTATTTACCTGAAATAGAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTACCCATTCTAATTCAGTATTTATTTACCTGAAATAGAGACA  850

seq1  ATATAAAAATCATGAAATATTAACAAATGTGTTAATTGGTATATGTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATCATGAAATATTAACAAATGTGTTAATTGGTATATGTTGCC  900

seq1  TTTCTATATATGTAGTTGAGTAGGAACTCAAATAAATGGAGGTTGTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATATGTAGTTGAGTAGGAACTCAAATAAATGGAGGTTGTAAAT  950

seq1  AAATTTGCTTGTAATCATCATCCAATCGACAGAGTTCCTCATTGTTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCTTGTAATCATCATCCAATCGACAGAGTTCCTCATTGTTTATC  1000

seq1  ATAATCTA-TATCTTTGGAAATCGTCAATAATTCTACATTTCTGTTACAA  1049
      |||||||| ||||||||||||||||||||| |  ||||||||||||||||
seq2  ATAATCTATTATCTTTGGAAATCGTCAATATTCTTACATTTCTGTTACAA  1050

seq1  CAAAATTTTAAAACATATACAATATTTATTAACTTAATTATCTTATGAAA  1099
      ||||| ||||||||||||||| ||||||||||||||| |||||  |||||
seq2  CAAAA-TTTAAAACATATACATTATTTATTAACTTAA-TATCTATTGAAA  1098

seq1  TTTT-GATTACTAATAACTAGGTAG-AAAAGC-TAC-TGTTGCTTTGAAA  1145
      |||| ||||||||   |||| |||| |||||| ||| |||||||||||| 
seq2  TTTTGGATTACTA--TACTA-GTAGAAAAAGCTTACTTGTTGCTTTGAAT  1145

seq1  TTCA  1149
      ||||
seq2  TTCA  1149


seq1: chr14_97961034_97962213
seq2: B6Ng01-297A04.g_66_1238 (reverse)

seq1  TACAGGTGGCA-CGCTGTGTGTTATATTCTATTA-------AAGTTACAA  42
      ||||||||||| ||| ||| ||||| ||| || |       ||||||   
seq2  TACAGGTGGCACCGCCGTG-GTTAT-TTCAATGACTTCAGCAAGTTA---  45

seq1  ACCATGTAAGACTTTGAAAG-ACTCCTTACTTAAACTATCA-CTACAGAG  90
             | ||||| ||||| |||||| || ||| |||||| ||||||||
seq2  -------AGGACTTGGAAAGAACTCCTAAC-TAACCTATCACCTACAGAG  87

seq1  TTACTGCAACGATGTTAAGAGGGTAAGCAAGGAAAATCAAAGTAAAAATG  140
       |||||| |||||||| ||||||||||| |||||||||||||||||||||
seq2  GTACTGC-ACGATGTT-AGAGGGTAAGC-AGGAAAATCAAAGTAAAAATG  134

seq1  CTGGGCATTTTCAGTTTCCTCCTAATAAGTCAAAATATGGCTTATTGTTC  190
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGGGCATTTTCAGTTTCCT-CTAATAAGTCAAAATATGGCTTATTGTTC  183

seq1  TCTTTTTCAACAGGGTGTTGGTGGTGTTGGTGGTATATTCCTGTAATCCC  240
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAACAGGGTG-TGGTGGTGTTGGTGGTATATTCCTGTAATCCC  232

seq1  AGT-CCTTGCCAGGCAGAGGCAGATTGCTAATTTCAAGGCTAGCCTTGTG  289
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTGCCAGGCAGAGGCAGATTGCTAATTTCAAGGCTAGCCTTGTG  282

seq1  CTAGTTCAGGGAATTCTAGGGCTACACGAAGAAGCCCTGTCTTGAATACC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAGGGAATTCTAGGGCTACACGAAGAAGCCCTGTCTTGAATACC  332

seq1  CATGCTTCTCATCAATGTTGGAAATGAAATAGACGCTCTACACATATCAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCTCATCAATGTTGGAAATGAAATAGACGCTCTACACATATCAG  382

seq1  AAGGGAATTACAGCTTTCCTATAACTAATGATGGCATAGTTTTCAGACAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTACAGCTTTCCTATAACTAATGATGGCATAGTTTTCAGACAT  432

seq1  TATATTTCAGTGTGAAAGTGATATGTATTCATTAGAAACTGTAGCTTTAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAGTGTGAAAGTGATATGTATTCATTAGAAACTGTAGCTTTAT  482

seq1  TTTTAATTTCGAGATTGTGATATACTTGCAATATTTCTTCCTTCCCTTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCGAGATTGTGATATACTTGCAATATTTCTTCCTTCCCTTTC  532

seq1  CTTTCTCCCAACTCTGACACACACCCCTGCCCACTCTCCTCTAAATTTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCAACTCTGACACACACCCCTGCCCACTCTCCTCTAAATTTGT  582

seq1  AGCTTCTTTTTTCTCCACTAATGGTTATTGAGTATGTGTGTGTGTGTGTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTTTTCTCCACTAATGGTTATTGAGTATGTGTGTGTGTGTGTA  632

seq1  CATATATAGTCCAAAACATAGTCTGTTCATTTTCTATGAAGTTCAGTACT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAGTCCAAAACATAGTCTGTTCATTTTCTATGAAGTTCAGTACT  682

seq1  GTATATTTATCCAGGCCAGTCACGTGATCTGATACGTTCCCAGAATGCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTATCCAGGCCAGTCACGTGATCTGATACGTTCCCAGAATGCTA  732

seq1  GGCAGGAATAGTGAGCTGCAGCCCTCAGAAGGAACTAAAAATAATTTGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAATAGTGAGCTGCAGCCCTCAGAAGGAACTAAAAATAATTTGTG  782

seq1  AGATACAGTTGTACCTTGTGATATTTTCAATTTGTTTTGTGTTTTGTACA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGTTGTACCTTGTGATATTTTCAATTTGTTTTGTGTTTTGTACA  832

seq1  TAGATTGAGAGTCGATGAAGATCTATATTAAATCTTCCATATCTGGCATT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGAGAGTCGATGAAGATCTATATTAAATCTTCCATATCTGGCATT  882

seq1  TGCTAAATGGGAAAGTTACTTAGGAAGGTACTGTGAAATGGAACCTGGAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATGGGAAAGTTACTTAGGAAGGTACTGTGAAATGGAACCTGGAT  932

seq1  TCTGCATATAGGCCAAATTAGGTTTTCCTAATTTAAATTTCCTGACTCAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATATAGGCCAAATTAGGTTTTCCTAATTTAAATTTCCTGACTCAA  982

seq1  CTTCTTCAAAATGTGAGAAACCCACAGTTCTGTGTTTTACTGTTCTCTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAAATGTGAGAAACCCACAGTTCTGTGTTTTACTGTTCTCTGT  1032

seq1  GATTGGTATTTGTAGCCTTTTTGTAAACACTGGGAGGGAGATAACTTTAA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTATTTGTAGCCTTTTTGTAAACACTGGGAGGGAGATAACTTTAA  1082

seq1  TGAGAGCGATCAGAGAAACAAATTGCACATATCAAAAGCTTAAGGAAGAG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCGATCAGAGAAACAAATTGCACATATCAAAAGCTTAAGGAAGAG  1132

seq1  CTCTTGTTCCTATGATCTCCAGTTTTGAAGAAATGGAATTC  1180
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTCCTATGATCTCCAGTTTTGAAGAAATGGAATTC  1173


| Home | SequenceCutter | Blast | Download |