BAC Information

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BAC

Clone NameB6Ng01-298D12
Chromosome14 (Build37)
Map Location 99,692,329 - 99,728,392
singlet/doubletdoublet
Overlap geneKlf5
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397
Downstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298D12.bB6Ng01-298D12.g
ACCGA093383GA093384
length1,1311,099
definitionB6Ng01-298D12.b B6Ng01-298D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,727,253 - 99,728,392)(99,692,329 - 99,693,432)
sequence
gaattcccaatactgttttcagaatagctgcctttgccacctttgacttg
gccacatcctctttggcacagtgcttctgtcaaagccagaattcattttc
tatttgatgggtaggtagcaacagatgatgctctgggaccctttctcatt
gctgagctctgttcttggtcttaatgtgaattatctctttaaaatgtccc
aacaatcctgaaagaaaaatactgctgttcagtgtgtttgctgtttggta
aggtactccttccttccatcactgttcaacactcaggaggcaaaggcagg
ggggatctgtgtaagtttgaggccagcctggtctatagagagcattcctg
aacagttggcagagaaaccctgtctcaaaacaaaacaaaacaaattcttc
aatgagttattaaataactattccaatggaaggtgaaaacacagtctgaa
aataattgaaccaagttattcccagcggcttggaacaacttagtgtcaat
aattcttgcccctgtcacttcttggctttttagattacaccaattcttct
taactagtggatttagtcactagcccgcatggacaggtcctagagagaag
ggacagaaccggaaatgtgcaggacagaaaggacatcgagttcattgtta
tacaagcaagactttgtgaaaatagtccagtgggcagtgaaggctcctga
gacagacatcattcattctgtagccccatgcgaccttatactctctgtgc
aagcaagggtggacttcaatttgtaatcctcctgcctccgccacacaagt
gctgagattacagggccccaccaccattactagcttatttggggcaacaa
aaaaacaaaacaaagctgttatatagaccaagagctctcagtgacatcca
ggggcaagcctctagtggctgaggccaagaatgctgccaaatgtcctaca
ggacaggacaggacaaacaacactctgggtccaggagagtgcaaggtgga
gggagacttatttatgactaaggaaagttattatgatgtaaatggaaaac
agatggatagattgtattgttgtcagataacagtgatctgcaaaatgagt
ggcagacagtgttatgttttgctgttgttgt

gaattcactacatagccaaggatgtccctgaactcctgatcctcctgtct
ccacttcctaagtgctaggattacaaatctgtgtcagctttgagtggtgt
tggggaacacaaagtgctggcaaacaagccaactaaattgagctatatcc
ctagccttcatctacttaggacccccacccctattccctccaaagaaaag
aaagaaagaggaagaaaaaaaaaagaaaaattactcaataattttaccat
ctaatcttagatgtcaaaatatgggtcattcgttcctttgtttgtgtgtt
ttcagtttgaggctgggtgggtgctatgtagcccaggctggtctcagttt
cctgtaatcctctagcctctggcttatgggtgcagaactatactgtagga
acgatgacagccagcagcaggttagtttgagacggtgtagctaagtagcc
acagctagcctggaactcattttgtaatctagatggctcccattcactgg
ttcccctgccccagtctctctagagctgtagccaggtgccctggagcctg
gcttcaaaagccataactttgtgctatcttttcacttctgtgggtccatg
tgtgtaaaaacctctacctcttatttccctctcttgaaaacttcttttac
ttcccatgtcaaaaaccttacccctctcttctctctactttctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctctttctttctttctttctttctttctctctc
tctctctttctttctttctttctttttctctctctttctttttttcttct
ctctctttctctctcttctttcttcctttcttttttcaaagaaattttta
ttatagtttcaatttaagtgtgtgtgcagatgtgcatgtctatggaagtc
ggtggccatttaattcttctggagattgaattccaggagatggtgtagtg
acacctgtgtaagtgcttgggaataagtcagttcttctacaagagccatg
atgctttcgtactgtgtgttggtgtgtgttatatgttccactgtcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99727253_99728392
seq2: B6Ng01-298D12.b_47_1177 (reverse)

seq1  ACAACAACAGCAAAAACCATAACACCCTGTCCTGCCAATCATTTTTGCAG  50
      |||||||||||||||  |||||||  |||| |||||| ||| ||||||||
seq2  ACAACAACAGCAAAA--CATAACA--CTGT-CTGCCACTCA-TTTTGCAG  44

seq1  ATTCACTGTTATCTGACA--CATACATTCTTAATCCATCTTGTTTTCCAT  98
      | ||||||||||||||||   ||||| |||  ||||||| ||||||||||
seq2  A-TCACTGTTATCTGACAACAATACAATCT--ATCCATC-TGTTTTCCAT  90

seq1  TTACATCATAATAACTTTCCTATGTCATTAAATAGTCTCCCTCCACCTTG  148
      |||||||||||||||||||||  ||||| ||  |||||||||||||||| 
seq2  TTACATCATAATAACTTTCCTTAGTCATAAATAAGTCTCCCTCCACCTT-  139

seq1  GCACTCTCCTGGA-CCAGAGTGTTGTTTGTCCTGTCCCTGTCCTGTAGGA  197
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GCACTCTCCTGGACCCAGAGTGTTGTTTGTCCTGT-CCTGTCCTGTAGGA  188

seq1  CATTTGGCAGCATTCTTGGCCTCAGCCACTAGAGGCTTGCCCCTGGATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCAGCATTCTTGGCCTCAGCCACTAGAGGCTTGCCCCTGGATGT  238

seq1  CACTGAGAGCTCTTGGTCTATATAACAGCTTTGTTTTGTTTTTTTGTTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGCTCTTGGTCTATATAACAGCTTTGTTTTGTTTTTTTGTTGC  288

seq1  CCCAAATAAGCTAGTAATGGTGGTGGGGCCCTGTAATCTCAGCACTTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATAAGCTAGTAATGGTGGTGGGGCCCTGTAATCTCAGCACTTGTG  338

seq1  TGGCGGAGGCAGGAGGATTACAAATTGAAGTCCACCCTTGCTTGCACAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGAGGCAGGAGGATTACAAATTGAAGTCCACCCTTGCTTGCACAGA  388

seq1  GAGTATAAGGTCGCATGGGGCTACAGAATGAATGATGTCTGTCTCAGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAGGTCGCATGGGGCTACAGAATGAATGATGTCTGTCTCAGGAG  438

seq1  CCTTCACTGCCCACTGGACTATTTTCACAAAGTCTTGCTTGTATAACAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGCCCACTGGACTATTTTCACAAAGTCTTGCTTGTATAACAAT  488

seq1  GAACTCGATGTCCTTTCTGTCCTGCACATTTCCGGTTCTGTCCCTTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGATGTCCTTTCTGTCCTGCACATTTCCGGTTCTGTCCCTTCTCT  538

seq1  CTAGGACCTGTCCATGCGGGCTAGTGACTAAATCCACTAGTTAAGAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACCTGTCCATGCGGGCTAGTGACTAAATCCACTAGTTAAGAAGAA  588

seq1  TTGGTGTAATCTAAAAAGCCAAGAAGTGACAGGGGCAAGAATTATTGACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTAATCTAAAAAGCCAAGAAGTGACAGGGGCAAGAATTATTGACA  638

seq1  CTAAGTTGTTCCAAGCCGCTGGGAATAACTTGGTTCAATTATTTTCAGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTTCCAAGCCGCTGGGAATAACTTGGTTCAATTATTTTCAGAC  688

seq1  TGTGTTTTCACCTTCCATTGGAATAGTTATTTAATAACTCATTGAAGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCACCTTCCATTGGAATAGTTATTTAATAACTCATTGAAGAAT  738

seq1  TTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCTGCCAACTGTTCAGGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGAGACAGGGTTTCTCTGCCAACTGTTCAGGAAT  788

seq1  GCTCTCTATAGACCAGGCTGGCCTCAAACTTACACAGATCCCCCCTGCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTATAGACCAGGCTGGCCTCAAACTTACACAGATCCCCCCTGCCT  838

seq1  TTGCCTCCTGAGTGTTGAACAGTGATGGAAGGAAGGAGTACCTTACCAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCCTGAGTGTTGAACAGTGATGGAAGGAAGGAGTACCTTACCAAA  888

seq1  CAGCAAACACACTGAACAGCAGTATTTTTCTTTCAGGATTGTTGGGACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACACACTGAACAGCAGTATTTTTCTTTCAGGATTGTTGGGACAT  938

seq1  TTTAAAGAGATAATTCACATTAAGACCAAGAACAGAGCTCAGCAATGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAGATAATTCACATTAAGACCAAGAACAGAGCTCAGCAATGAGA  988

seq1  AAGGGTCCCAGAGCATCATCTGTTGCTACCTACCCATCAAATAGAAAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCCAGAGCATCATCTGTTGCTACCTACCCATCAAATAGAAAATG  1038

seq1  AATTCTGGCTTTGACAGAAGCACTGTGCCAAAGAGGATGTGGCCAAGTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGCTTTGACAGAAGCACTGTGCCAAAGAGGATGTGGCCAAGTCA  1088

seq1  AAGGTGGCAAAGGCAGCTATTCTGAAAACAGTATTGGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCAAAGGCAGCTATTCTGAAAACAGTATTGGGAATTC  1131


seq1: chr14_99692329_99693432
seq2: B6Ng01-298D12.g_66_1164

seq1  GAATTCACTACATAGCCAAGGATGTCCCTGAACTCCTGATCCTCCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACATAGCCAAGGATGTCCCTGAACTCCTGATCCTCCTGTCT  50

seq1  CCACTTCCTAAGTGCTAGGATTACAAATCTGTGTCAGCTTTGAGTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCTAAGTGCTAGGATTACAAATCTGTGTCAGCTTTGAGTGGTGT  100

seq1  TGGGGAACACAAAGTGCTGGCAAACAAGCCAACTAAATTGAGCTATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACACAAAGTGCTGGCAAACAAGCCAACTAAATTGAGCTATATCC  150

seq1  CTAGCCTTCATCTACTTAGGACCCCCACCCCTATTCCCTCCAAAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCATCTACTTAGGACCCCCACCCCTATTCCCTCCAAAGAAAAG  200

seq1  AAAGAAAGAGGAAGAAAAAAAAAAGAAAAATTACTCAATAATTTTACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGGAAGAAAAAAAAAAGAAAAATTACTCAATAATTTTACCAT  250

seq1  CTAATCTTAGATGTCAAAATATGGGTCATTCGTTCCTTTGTTTGTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTAGATGTCAAAATATGGGTCATTCGTTCCTTTGTTTGTGTGTT  300

seq1  TTCAGTTTGAGGCTGGGTGGGTGCTATGTAGCCCAGGCTGGTCTCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGAGGCTGGGTGGGTGCTATGTAGCCCAGGCTGGTCTCAGTTT  350

seq1  CCTGTAATCCTCTAGCCTCTGGCTTATGGGTGCAGAACTATACTGTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATCCTCTAGCCTCTGGCTTATGGGTGCAGAACTATACTGTAGGA  400

seq1  ACGATGACAGCCAGCAGCAGGTTAGTTTGAGACGGTGTAGCTAAGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGACAGCCAGCAGCAGGTTAGTTTGAGACGGTGTAGCTAAGTAGCC  450

seq1  ACAGCTAGCCTGGAACTCATTTTGTAATCTAGATGGCTCCCATTCACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAGCCTGGAACTCATTTTGTAATCTAGATGGCTCCCATTCACTGG  500

seq1  TTCCCCTGCCCCAGTCTCTCTAGAGCTGTAGCCAGGTGCCCTGGAGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGCCCCAGTCTCTCTAGAGCTGTAGCCAGGTGCCCTGGAGCCTG  550

seq1  GCTTCAAAAGCCATAACTTTGTGCTATCTTTTCACTTCTGTGGGTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAAGCCATAACTTTGTGCTATCTTTTCACTTCTGTGGGTCCATG  600

seq1  TGTGTAAAAACCTCTACCTCTTATTTCCCTCTCTTGAAAACTTCTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAAACCTCTACCTCTTATTTCCCTCTCTTGAAAACTTCTTTTAC  650

seq1  TTCCCATGTCAAAAACCTTACCCCTCTCTTCTCTCTACTTTCTTTCTTTC  700
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  TTCCCATGTCAAAAACCTTACCCCTCTCTTCTCTCTA----CTTTCTTTC  696

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  746

seq1  TCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTC  796

seq1  TCTCTCTCTCTTTCTTTCTTTCTTTCTTTTTCTCTCTCTTTCTTTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTTCTTTCTTTCTTTCTTTTTCTCTCTCTTTCTTTTTTTC  846

seq1  TTCTCTCTCTTTCTCTCTCTTCTTTTCTTCCTTTCTTTTTTCAAAAGAAA  900
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TTCTCTCTCTTTCTCTCTCTTC-TTTCTTCCTTTCTTTTTTC-AAAGAAA  894

seq1  TTTTTATTATAGTTTCAATTTAAGTGTGTGTGCAGATGTGCATGTCTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATAGTTTCAATTTAAGTGTGTGTGCAGATGTGCATGTCTATG  944

seq1  GAAGTCGGTGG-CATTAAATTC-TCTGGAGATGGAATTCCAGGAGATGGT  998
      ||||||||||| |||| ||||| ||||||||| |||||||||||||||||
seq2  GAAGTCGGTGGCCATTTAATTCTTCTGGAGATTGAATTCCAGGAGATGGT  994

seq1  GTAAGTGACACCTGTGTAAGTGCTTGGGAATAAAGTCAGGTCTTCTACAA  1048
      || |||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GT-AGTGACACCTGTGTAAGTGCTTGGGAAT-AAGTCAGTTCTTCTACAA  1042

seq1  GAGCCATGAGTGCTTTTCCGTACTGTGTGT--GTGTGTGTATAATGT--C  1094
      ||||||||| ||||||  ||||||||||||  ||||||||   ||||  |
seq2  GAGCCATGA-TGCTTT--CGTACTGTGTGTTGGTGTGTGTTATATGTTCC  1089

seq1  ACTGTCCTAT  1104
      ||||||||||
seq2  ACTGTCCTAT  1099


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