BAC Information

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BAC

Clone NameB6Ng01-298G20
Chromosome14 (Build37)
Map Location 98,279,460 - 98,441,056
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298G20.bB6Ng01-298G20.g
ACCGA093534GA093535
length1,143824
definitionB6Ng01-298G20.b B6Ng01-298G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,439,897 - 98,441,056)(98,279,460 - 98,280,283)
sequence
gaattctgttctctaattttgtctgtctgagcaccatcttcctgtaccac
aaaataaactctcaattgctgacgaaagtaccagtaaacaaagacaaatg
tacaactgcaagtgggaaatctttaatgaaacttaatgagacttttctga
aagagcacttttaaaatacttgatgctatgtttcatagctgtctcaacga
cactgagaatgccactctaaatgctttgatttctggaacaagtttcttat
gccttttttattcgtgtatgaagatttagtatgaatacaaaagtagttag
atttatgagaatataggggttcaatttggggaaagaaaactaacgaagag
gcttgtgatgccaaagaaagacatgtcttctgtgatgttccttaaacagt
aaactccacgatgaaatgagtcattctggtggtgggtcaaaggcaacatt
tcaaaggtggcctacaaaagcttcatttatttctattcttaacaaatcat
agaagaggttcatccacacagaggcagcaacctcttttaagtccaaatac
tcataatttaagttttgaaacttaattgtcaattatatttttgtagagtc
tagttgattgttgaaaacaagaccccgagaagtgtagatatattaagtga
tgacctcaatcaagaagagtacaaattccaaaaaccagagcaacactggt
cacgagacagaacaagtgtcagatccttcattttcctaaagattcttcgg
gccattactcagatttctttttcctggtgacagttactataaagcaatgg
ctaagtgtctagattagggatttgtagaacatccagccatcactattacc
tgaaaaccagaagacataattaatgaagagaaaagatgatgagatagaaa
ttatatatttgaataaatcatcagctagtgttgggggtggtgattacaga
gcaaagatactacagtgtagccttagaggggaggtatctagagcaaaatc
ttgaagattcatatttctatacctatgctgataaactaaatatttttaga
gcttttttctggcactgaagacaatgtttcaccatacatgctgctggctc
tgtccaatatggcttttcccttctgctacggatactatttcat

gaattctctactgaatcactttgacacttgccctttgtttgtttgtttga
tttttgggagattttaattactacttctttttcactagaggttatgagtc
tatttaattgtctttttaaccttaatttagctttggaaggtaatgtatat
aaagaaatttatttatttattttttgtttttaggtttgcgtaaactcaac
cctcatcagaggagtttcatatcacagtaggtggtaataacacagagacc
cactaatgggcagtttgtaaagagggagagacttcagggcactctgcaat
tagtagtgtgtccttatcatacccctccattcaatcttcagggttctatg
tgggagatgatgaagaaagattataagatagggtcgaatagttgaagaag
gaggaaacagcctttccagagtcaaaagtactgatgcacatacggactca
tagagagtctgccagtatgaaggaacctacactggtactaaccacaaaac
atcccagcatgggggaaagaagtgcacacagatccccacccctaatctag
aggctatttgtaattactaaatatttggaaatggaaattcagttttcgcc
aatggagagtcaatgaatctatcaaccaccctccagaataggctccatgc
ttagtagtagtggccaacacagactccttatttgcactttttaaaaaaat
ctgtttttctttttttagtatttttgtcttagtttttcaaagtttccttg
tgttggtattcactcttttgtttctatttttatattgagaaagagaaata
agatgaagttgggtgggtagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98439897_98441056
seq2: B6Ng01-298G20.b_45_1187 (reverse)

seq1  ATGAAATAGTATTCGTTAAAGCAG-AGGGAAAAG-CATATT-GACAGAGG  47
      |||||||||||| |||   ||||| ||||||||| |||||| |||||| |
seq2  ATGAAATAGTATCCGT---AGCAGAAGGGAAAAGCCATATTGGACAGA-G  46

seq1  CAAGCAAGCATGTATGTTGAAACATTTGTCCCTTCAGTGCTCAG-AAAAA  96
      | ||| |||||||||| ||||||| ||||  ||||||||| ||| |||||
seq2  CCAGC-AGCATGTATGGTGAAACA-TTGT--CTTCAGTGC-CAGAAAAAA  91

seq1  GCTCTAAAAATATTTAGTTTATCAGCAATAGGGTATAAGAAATATTGAAT  146
      |||||||||||||||||||||||||| ||| ||||| ||||||| |||||
seq2  GCTCTAAAAATATTTAGTTTATCAGC-ATA-GGTAT-AGAAATA-TGAAT  137

seq1  CTTCAAGATTTTTGCTTCTTAGAATTACCTCCCCTCTAAGGCTACACTGT  196
      |||||||| |||||||   ||||  |||||||||||||||||||||||||
seq2  CTTCAAGA-TTTTGCT--CTAGA--TACCTCCCCTCTAAGGCTACACTGT  182

seq1  AGTATTCTTTGCTCTGTAATCACCACCCCCAACACTAGCTGATGATTTAT  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTA-TCTTTGCTCTGTAATCACCACCCCCAACACTAGCTGATGATTTAT  231

seq1  TCAAATATATAATTTCTATCTCATCATCTTTTCTCTTCATTAATTATGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATATAATTTCTATCTCATCATCTTTTCTCTTCATTAATTATGTC  281

seq1  TTCTGGTTTTCAGGTAATAGTGATGGCTGGATGTTCTACAAATCCCCTAA  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTGGTTTTCAGGTAATAGTGATGGCTGGATGTTCTACAAAT-CCCTAA  330

seq1  TCTAGACACCTTAGCCATTGCTTTATAGTAACTGTCACCAGGAAAAAGAA  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACA-CTTAGCCATTGCTTTATAGTAACTGTCACCAGGAAAAAGAA  379

seq1  ATCTGAGTAATGGCCCGAAGAATCTTTAGGAAAATGAAGGATCTGACACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTAATGGCCCGAAGAATCTTTAGGAAAATGAAGGATCTGACACT  429

seq1  TGTTCTGTCTCGTGACCAGTGTTGCTCTGGTTTTTGGAATTTGTACTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCTCGTGACCAGTGTTGCTCTGGTTTTTGGAATTTGTACTCTT  479

seq1  CTTGATTGAGGTCATCACTTAATATATCTACACTTCTCGGGGTCTTGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGAGGTCATCACTTAATATATCTACACTTCTCGGGGTCTTGTTT  529

seq1  TCAACAATCAACTAGACTCTACAAAAATATAATTGACAATTAAGTTTCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATCAACTAGACTCTACAAAAATATAATTGACAATTAAGTTTCAA  579

seq1  AACTTAAATTATGAGTATTTGGACTTAAAAGAGGTTGCTGCCTCTGTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTATGAGTATTTGGACTTAAAAGAGGTTGCTGCCTCTGTGTG  629

seq1  GATGAACCTCTTCTATGATTTGTTAAGAATAGAAATAAATGAAGCTTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCTCTTCTATGATTTGTTAAGAATAGAAATAAATGAAGCTTTTG  679

seq1  TAGGCCACCTTTGAAATGTTGCCTTTGACCCACCACCAGAATGACTCATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACCTTTGAAATGTTGCCTTTGACCCACCACCAGAATGACTCATT  729

seq1  TCATCGTGGAGTTTACTGTTTAAGGAACATCACAGAAGACATGTCTTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTGGAGTTTACTGTTTAAGGAACATCACAGAAGACATGTCTTTCT  779

seq1  TTGGCATCACAAGCCTCTTCGTTAGTTTTCTTTCCCCAAATTGAACCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCACAAGCCTCTTCGTTAGTTTTCTTTCCCCAAATTGAACCCCT  829

seq1  ATATTCTCATAAATCTAACTACTTTTGTATTCATACTAAATCTTCATACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCATAAATCTAACTACTTTTGTATTCATACTAAATCTTCATACA  879

seq1  CGAATAAAAAAGGCATAAGAAACTTGTTCCAGAAATCAAAGCATTTAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAAAAAAGGCATAAGAAACTTGTTCCAGAAATCAAAGCATTTAGAG  929

seq1  TGGCATTCTCAGTGTCGTTGAGACAGCTATGAAACATAGCATCAAGTATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTCAGTGTCGTTGAGACAGCTATGAAACATAGCATCAAGTATT  979

seq1  TTAAAAGTGCTCTTTCAGAAAAGTCTCATTAAGTTTCATTAAAGATTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGCTCTTTCAGAAAAGTCTCATTAAGTTTCATTAAAGATTTCC  1029

seq1  CACTTGCAGTTGTACATTTGTCTTTGTTTACTGGTACTTTCGTCAGCAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAGTTGTACATTTGTCTTTGTTTACTGGTACTTTCGTCAGCAAT  1079

seq1  TGAGAGTTTATTTTGTGGTACAGGAAGATGGTGCTCAGACAGACAAAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTTATTTTGTGGTACAGGAAGATGGTGCTCAGACAGACAAAATT  1129

seq1  AGAGAACAGAATTC  1160
      ||||||||||||||
seq2  AGAGAACAGAATTC  1143


seq1: chr14_98279460_98280283
seq2: B6Ng01-298G20.g_66_889

seq1  GAATTCTCTACTGAATCACTTTGACACTTGCCCTTTGTTTGTTTGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGAATCACTTTGACACTTGCCCTTTGTTTGTTTGTTTGA  50

seq1  TTTTTGGGAGATTTTAATTACTACTTCTTTTTCACTAGAGGTTATGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGAGATTTTAATTACTACTTCTTTTTCACTAGAGGTTATGAGTC  100

seq1  TATTTAATTGTCTTTTTAACCTTAATTTAGCTTTGGAAGGTAATGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTGTCTTTTTAACCTTAATTTAGCTTTGGAAGGTAATGTATAT  150

seq1  AAAGAAATTTATTTATTTATTTTTTGTTTTTAGGTTTGCGTAAACTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTATTTATTTATTTTTTGTTTTTAGGTTTGCGTAAACTCAAC  200

seq1  CCTCATCAGAGGAGTTTCATATCACAGTAGGTGGTAATAACACAGAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCAGAGGAGTTTCATATCACAGTAGGTGGTAATAACACAGAGACC  250

seq1  CACTAATGGGCAGTTTGTAAAGAGGGAGAGACTTCAGGGCACTCTGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGGGCAGTTTGTAAAGAGGGAGAGACTTCAGGGCACTCTGCAAT  300

seq1  TAGTAGTGTGTCCTTATCATACCCCTCCATTCAATCTTCAGGGTTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGTGTCCTTATCATACCCCTCCATTCAATCTTCAGGGTTCTATG  350

seq1  TGGGAGATGATGAAGAAAGATTATAAGATAGGGTCGAATAGTTGAAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGATGAAGAAAGATTATAAGATAGGGTCGAATAGTTGAAGAAG  400

seq1  GAGGAAACAGCCTTTCCAGAGTCAAAAGTACTGATGCACATACGGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACAGCCTTTCCAGAGTCAAAAGTACTGATGCACATACGGACTCA  450

seq1  TAGAGAGTCTGCCAGTATGAAGGAACCTACACTGGTACTAACCACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTCTGCCAGTATGAAGGAACCTACACTGGTACTAACCACAAAAC  500

seq1  ATCCCAGCATGGGGGAAAGAAGTGCACACAGATCCCCACCCCTAATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCATGGGGGAAAGAAGTGCACACAGATCCCCACCCCTAATCTAG  550

seq1  AGGCTATTTGTAATTACTAAATATTTGGAAATGGAAATTCAGTTTTCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTTGTAATTACTAAATATTTGGAAATGGAAATTCAGTTTTCGCC  600

seq1  AATGGAGAGTCAATGAATCTATCAACCACCCTCCAGAATAGGCTCCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGTCAATGAATCTATCAACCACCCTCCAGAATAGGCTCCATGC  650

seq1  TTAGTAGTAGTGGCCAACACAGACTCCTTATTTGCACTTTTTAAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTAGTGGCCAACACAGACTCCTTATTTGCACTTTTTAAAAAAAT  700

seq1  CTGTTTTTCTTTTTTTAGTATTTTTGTCTTAGTTTTTCAAAGTTTCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTCTTTTTTTAGTATTTTTGTCTTAGTTTTTCAAAGTTTCCTTG  750

seq1  TGTTGGTATTCACTCTTTTGTTTCTATTTTTATATTGAGAAAGAGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTATTCACTCTTTTGTTTCTATTTTTATATTGAGAAAGAGAAATA  800

seq1  AGATGAAGTTGGGTGGGTAGGGTT  824
      ||||||||||||||||||||||||
seq2  AGATGAAGTTGGGTGGGTAGGGTT  824


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