BAC Information

Click to search

BAC

Clone NameB6Ng01-299B12
Chromosome14 (Build37)
Map Location 113,767,666 - 113,890,371
singlet/doubletdoublet
Overlap geneLOC100043510
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC382947, LOC668791, LOC100043821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B12.bB6Ng01-299B12.g
ACCGA094031GA094032
length1,1161,063
definitionB6Ng01-299B12.b B6Ng01-299B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,767,666 - 113,768,778)(113,889,299 - 113,890,371)
sequence
gaattctttacccattgttatcttttcactcttgtaaatgtcccagcatc
ctttctaggatgaatgaatctcaaatttgtggtccttagacatcatctca
tatgatagtacttcatgttcatctcctacagcctactatagaaaaatatc
cctagaatccatacatacattcataaaacctgaaggcaaaagacaaaact
ttttacttccaaattactattatttcaagtgtctctgttgaattgaaaat
attctcatttcaacaatgctagttttgttctttgaagtgccacacaataa
ttctagacttcttttctttataagactttaattatgtgctcataattaaa
tagaatgcttctccatgtagacctctctcatttcctcattatacatcatc
agtacttccaatttctattcaggttcttgtttcacagacatctcattatt
cagatttcttttataagagtcttaattaaaaacttattctaaatctagaa
aaaaattgaagttttaaagataagtgaataaaatgtttatgaattctact
ataatgttatttgttcatcatatttgacatttattttggtcacaatcagt
ttaaatacacttactagcaatgagaaaattgtattttctatttccaatca
aatagcacaagtctgtcacagcaatagaatggtagaattacgtaactata
cataaaacattttcctacataattaaacattttgtaaagtagagtgtgtt
gtgcatagtgtttgcctgtgtgaaacattgtgtgagcatgattcaatggt
gtttgaaaaagtagcaaattgcttttgagtataatctactattgtaataa
ttataagtgtattagaattaatattcatgaagaaactttccatattctaa
atttcactgaaattcatgtaaaatgtaaaataagatttttaccaatctat
aaaattaaaattaaaattcacaaatgaattaacattttgttttgttttgt
ttttgttttgatttgttttttgagacaggtttctcttgttgtagccctgg
ctgcctggaactcactctgtttgaacaggctccacttgtactcagaaatc
ttgttccaccttctgc

gaattccatgtgccatgcttcagagacgtgaaatgcaatcctagagtata
catggaagctggaagcacaagataccctgaaaagcaaaggagggaaggga
acaacactggtagtgtcaagatagttaataacactgcatatccaaagtga
aaatggaatgttactggcacaaacatgtatgtagtggacccagaagtaaa
cccgcatgcttgggtccatctgacttttcataaattactaactccacact
ttgaaaaaagatcatctcgatgccatccgtgactacagggtggcggcggg
tagcagggcatgcaatgcaagtcgcaggaaggacaggacgaacagttatt
tggctatgggttgcagacattgctgaacaggggtggtgcctggtcatcct
caaggaatggatggaggtgaaagacgccccggggtcagcaaacttagttt
caggacggacctcattgctcaagtttgagaggtacagacatggccaagtc
catgaaccacactacacccaaccactcctgcaaatgacacagaaatgaca
gaaaccctggacataaagatacgaatctcttaagggggttgaccccaagt
tcctgaggaacatgcactttgccaagaatcacaacaaggaaggcctcaag
aagatgcaggccagcaaggctcttgtgaagcctcaggccatcaagcccaa
tacgccaaagggccccagcctcaaactcaaccctctggatttatcgatca
ccccaagcttgggaaatggattcaaagctacatggccaagggtcagaggc
tctgccaactgaagcctgaggttcaagcaaagacagggataaaagcttca
cctaagcttcagacttcagctccattccaggctccgtaaggtgcccaggc
ccctgttgaaggccccatagaaaagctcctgtgtgttaggacagatggac
ttctgtgacacatctacccacacactatttgcagtgactagtgtctatgc
tgttttacaataaactcagcagatctgtcaaaaaagaaatagagaagggg
ggggagggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113767666_113768778
seq2: B6Ng01-299B12.b_46_1161

seq1  GAATTCTTTACCCATTGTTATCTTTTCACTCTTGTAAATGTCCCAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCATTGTTATCTTTTCACTCTTGTAAATGTCCCAGCATC  50

seq1  CTTTCTAGGATGAATGAATCTCAAATTTGTGGTCCTTAGACATCATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGGATGAATGAATCTCAAATTTGTGGTCCTTAGACATCATCTCA  100

seq1  TATGATAGTACTTCATGTTCATCTCCTACAGCCTACTATAGAAAAATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGTACTTCATGTTCATCTCCTACAGCCTACTATAGAAAAATATC  150

seq1  CCTAGAATCCATACATACATTCATAAAACCTGAAGGCAAAAGACAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATCCATACATACATTCATAAAACCTGAAGGCAAAAGACAAAACT  200

seq1  TTTTACTTCCAAATTACTATTATTTCAAGTGTCTCTGTTGAATTGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCCAAATTACTATTATTTCAAGTGTCTCTGTTGAATTGAAAAT  250

seq1  ATTCTCATTTCAACAATGCTAGTTTTGTTCTTTGAAGTGCCACACAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATTTCAACAATGCTAGTTTTGTTCTTTGAAGTGCCACACAATAA  300

seq1  TTCTAGACTTCTTTTCTTTATAAGACTTTAATTATGTGCTCATAATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACTTCTTTTCTTTATAAGACTTTAATTATGTGCTCATAATTAAA  350

seq1  TAGAATGCTTCTCCATGTAGACCTCTCTCATTTCCTCATTATACATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCTTCTCCATGTAGACCTCTCTCATTTCCTCATTATACATCATC  400

seq1  AGTACTTCCAATTTCTATTCAGGTTCTTGTTTCACAGACATCTCATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCCAATTTCTATTCAGGTTCTTGTTTCACAGACATCTCATTATT  450

seq1  CAGATTTCTTTTATAAGAGTCTTAATTAAAAACTTATTCTAAATCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTTTTATAAGAGTCTTAATTAAAAACTTATTCTAAATCTAGAA  500

seq1  AAAAATTGAAGTTTTAAAGATAAGTGAATAAAATGTTTATGAATTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAAGTTTTAAAGATAAGTGAATAAAATGTTTATGAATTCTACT  550

seq1  ATAATGTTATTTGTTCATCATATTTGACATTTATTTTGGTCACAATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTATTTGTTCATCATATTTGACATTTATTTTGGTCACAATCAGT  600

seq1  TTAAATACACTTACTAGCAATGAGAAAATTGTATTTTCTATTTCCAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACACTTACTAGCAATGAGAAAATTGTATTTTCTATTTCCAATCA  650

seq1  AATAGCACAAGTCTGTCACAGCAATAGAATGGTAGAATTACGTAACTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACAAGTCTGTCACAGCAATAGAATGGTAGAATTACGTAACTATA  700

seq1  CATAAAACATTTTCCTACATAATTAAACATTTTGTAAAGTAGAGTGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATTTTCCTACATAATTAAACATTTTGTAAAGTAGAGTGTGTT  750

seq1  GTGCATAGTGTTTGCCTGTGTGAAACATTGTGTGAGCATGATTCAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGTGTTTGCCTGTGTGAAACATTGTGTGAGCATGATTCAATGGT  800

seq1  GTTTGAAAAAGTAGCAAATTGCTTTTGAGTATAATCTACTATTGTAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAAAGTAGCAAATTGCTTTTGAGTATAATCTACTATTGTAATAA  850

seq1  TTATAAGTGTATTAGAATTAATATTCATGAAGAAACTTTCCATATTCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGTATTAGAATTAATATTCATGAAGAAACTTTCCATATTCTAA  900

seq1  ATTTCACTGAAATTCATGTAAAATGTAAAATAAGATTTTTACCAATCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGAAATTCATGTAAAATGTAAAATAAGATTTTTACCAATCTAT  950

seq1  AAAATTAAAATTAAAATTCACAAATGAATTAAACATTTTGTTTTGTTTTG  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAATTAAAATTAAAATTCACAAATGAATT-AACATTTTGTTTTGTTTTG  999

seq1  TTTTTGTTTTGATTTGTTTTTTGAGACAGGGTTTCTCT--GTGTAGCCCT  1048
      |||||||||||||||||||||||||||| |||||||||   |||||||||
seq2  TTTTTGTTTTGATTTGTTTTTTGAGACA-GGTTTCTCTTGTTGTAGCCCT  1048

seq1  GGCTGCCCTGGAACTCACTCTG-TTGAACAGGCTCACCTTGTACTCAGAA  1097
      ||||| |||||||||||||||| ||||||||||||  |||||||||||||
seq2  GGCTG-CCTGGAACTCACTCTGTTTGAACAGGCTCCACTTGTACTCAGAA  1097

seq1  ATCT--GTCCACC-TCTGC  1113
      ||||   |||||| |||||
seq2  ATCTTGTTCCACCTTCTGC  1116


seq1: chr14_113889299_113890371
seq2: B6Ng01-299B12.g_67_1129 (reverse)

seq1  CCCTTCCCTTCCCTCCCCCCTCTCTATTTCTTTTTTTGACAGATCTTGCC  50
       |||| || |||| ||||| |||||||||| |||||||||||||||   |
seq2  -CCTTTCCCTCCC-CCCCCTTCTCTATTTC-TTTTTTGACAGATCT--GC  45

seq1  TGAGTTTATTTGTAAAAACAGCATAGAACACTAGTCAACTGCAAATAGTG  100
      |||||||| |||| |||||||||||| ||||||||| |||||||||||||
seq2  TGAGTTTA-TTGT-AAAACAGCATAG-ACACTAGTC-ACTGCAAATAGTG  91

seq1  TGTGGGTAGATGTGTCACAGAAGTCCATCTGTCCTAACACACAGGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGGGTAGATGTGTCACAGAAGTCCATCTGTCCTAACACACAGGAG-CT  140

seq1  TTTCTATGGGGCCTTCAACAGGGGCCTGGGCACCTTACGGAGCCTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGGGGCCTTCAACAGGGGCCTGGGCACCTTACGGAGCCTGGAAT  190

seq1  GGAGCTGAAGTCTGAAGCTTAGGTGAAGCTTTTATCCCTGTCTTTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAAGTCTGAAGCTTAGGTGAAGCTTTTATCCCTGTCTTTGCTTG  240

seq1  AACCTCAGGCTTCAGTTGGCAGAGCCTCTGACCCTTGGCCATGTAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGGCTTCAGTTGGCAGAGCCTCTGACCCTTGGCCATGTAGCTTT  290

seq1  GAATCCATTTCCCAAGCTTGGGGTGATCGATAAATCCAGAGGGTTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATTTCCCAAGCTTGGGGTGATCGATAAATCCAGAGGGTTGAGTT  340

seq1  TGAGGCTGGGGCCCTTTGGCGTATTGGGCTTGATGGCCTGAGGCTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGGGCCCTTTGGCGTATTGGGCTTGATGGCCTGAGGCTTCACA  390

seq1  AGAGCCTTGCTGGCCTGCATCTTCTTGAGGCCTTCCTTGTTGTGATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTGCTGGCCTGCATCTTCTTGAGGCCTTCCTTGTTGTGATTCTT  440

seq1  GGCAAAGTGCATGTTCCTCAGGAACTTGGGGTCAACCCCCTTAAGAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTGCATGTTCCTCAGGAACTTGGGGTCAACCCCCTTAAGAGATT  490

seq1  CGTATCTTTATGTCCAGGGTTTCTGTCATTTCTGTGTCATTTGCAGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTTTATGTCCAGGGTTTCTGTCATTTCTGTGTCATTTGCAGGAGT  540

seq1  GGTTGGGTGTAGTGTGGTTCATGGACTTGGCCATGTCTGTACCTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTGTAGTGTGGTTCATGGACTTGGCCATGTCTGTACCTCTCAAA  590

seq1  CTTGAGCAATGAGGTCCGTCCTGAAACTAAGTTTGCTGACCCCGGGGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAATGAGGTCCGTCCTGAAACTAAGTTTGCTGACCCCGGGGCGT  640

seq1  CTTTCACCTCCATCCATTCCTTGAGGATGACCAGGCACCACCCCTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCTCCATCCATTCCTTGAGGATGACCAGGCACCACCCCTGTTCA  690

seq1  GCAATGTCTGCAACCCATAGCCAAATAACTGTTCGTCCTGTCCTTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCTGCAACCCATAGCCAAATAACTGTTCGTCCTGTCCTTCCTGC  740

seq1  GACTTGCATTGCATGCCCTGCTACCCGCCGCCACCCTGTAGTCACGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCATTGCATGCCCTGCTACCCGCCGCCACCCTGTAGTCACGGATG  790

seq1  GCATCGAGATGATCTTTTTTCAAAGTGTGGAGTTAGTAATTTATGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGATGATCTTTTTTCAAAGTGTGGAGTTAGTAATTTATGAAAAG  840

seq1  TCAGATGGACCCAAGCATGCGGGTTTACTTCTGGGTCCACTACATACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGACCCAAGCATGCGGGTTTACTTCTGGGTCCACTACATACATG  890

seq1  TTTGTGCCAGTAACATTCCATTTTCACTTTGGATATGCAGTGTTATTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCAGTAACATTCCATTTTCACTTTGGATATGCAGTGTTATTAAC  940

seq1  TATCTTGACACTACCAGTGTTGTTCCCTTCCCTCCTTTGCTTTTCAGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGACACTACCAGTGTTGTTCCCTTCCCTCCTTTGCTTTTCAGGGT  990

seq1  ATCTTGTGCTTCCAGCTTCCATGTATACTCTAGGATTGCATTTCACGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTGCTTCCAGCTTCCATGTATACTCTAGGATTGCATTTCACGTCT  1040

seq1  CTGAAGCATGGCACATGGAATTC  1073
      |||||||||||||||||||||||
seq2  CTGAAGCATGGCACATGGAATTC  1063


| Home | SequenceCutter | Blast | Download |