BAC Information

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BAC

Clone NameB6Ng01-300B01
Chromosome14 (Build37)
Map Location 79,253,349 - 79,444,085
singlet/doubletdoublet
Overlap gene1300010F03Rik, LOC629709
Upstream geneDnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
Downstream geneLOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300B01.bB6Ng01-300B01.g
ACCGA094736GA094737
length1,1651,134
definitionB6Ng01-300B01.b B6Ng01-300B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,442,902 - 79,444,085)(79,253,349 - 79,254,491)
sequence
gaattcacaagcacatggtgaacagcaactagctaccggctgaaagcatc
ttaggaaccgggacagacatcatctatcttagtttcccttctgtgctgtg
aaagaatactctcacaaaagcaacttcggggctgaggggcttactgtggc
tcaaagttcaaggtccagttcatcatgatggaaaccacggtggcaggaac
agctggtccatcagcaattagagagagagcaagttggtacgcaggtacct
tctccattttatacaggatcctcttctatggaatggacccattcacaatc
aagataggtctttccaaatcaattaatacaatcaagataattccttacag
atagtctcaaggtggtaagtttaacctagacagtccatcacaggtatacc
ctttctcctaggtgattggagaacttgtgaagatgataatctctgtgtgc
tatataaatgtttgtggaagacacaaatataggaattttgatgaaattgg
aaatcaaccagatacaaggcaaaaataattacaaaccaaagatctacaca
tagcaatgtgagtgaggctttatcatatactccatgctgtcaaatgggag
caccagcaggcatttagtaggaaacccaccacttacttagctgctgctaa
taaaatgtttctaaataggtttttcagatgtgtaatgggtaaagctgagg
cacaggtgctcccagaggtgctcaacagcagctgccatgtcccctgaccc
agccccagatcccttttatcacagataagaatgatgtgatgacggttcag
tcagattcgccatgagacttgaagtgcgcgtcttttctattttctaccaa
cacttctatccgctccctgggactttgtccctgtgcgtggatgatgctgt
gctttgtaaaggcgttcactccaagatatctgattttaaaagggcctaat
ttggcaactacttgctacaagtataccttcattttggaaagggacaattt
aaatacaaagtagagaaagcaacagttaaattactaccatatattttact
agttggctgtctacatatctagagaacccagtcacagtccttgtatagag
aatgcttgaatcctcgagatctccactcgatccacaggccattggctcgt
aagttaatgaaagct
gaattccaggccagcctggtctacatagtgagttgccaaatgggttcgtg
taagattaattactttttattattttaaacatagaagttttttaaaatta
cctttgagtaatccttttaaataagaaatattctggaaagtaagattaaa
acttcctactttaaatattttctaaatttaatttcatttggaaggtttta
gccttgaattcctttaattaaaaatttcatccaagagacataataattga
ctatagctatctgtggcaattttgtacaatatatggatctagctaatgtg
ttttatttgcatatttgttatataagtgcagttaaatactcagcagtatt
gtttttgtacttctaaaatgagctcattctggttactgaaatcattctag
cagtagtaattattctagagtagacggctactctagtggtagtcgctgag
tagcctatgttttaagtccacctcccccacccccatcctttcctttcttt
tcttttctctcttctttctttctcttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttaggcaggtctcacg
tagtctaggctagcttcaagctttgtatgttgccaaggctgtccttgaac
ttttgatccttctacctgcagtatttctgctgtgcagggattagaaggta
tacctccacgcttgccctgtctctttatatttcttgacagggttttatgt
agctctggctggcctggaactcactatgcagaccaggctggcctcaaact
cactgagaaccacttgcctctgactgcagggattgagggtgtggactacc
ccatgtagctttctttaattatttgattttttttttttttttttgatata
aagtcttgcagtggtgccttgggcagcctggaacttgtggcatccttctg
gaattattcaccagctgtgactgcatctgactttaaatttcttaacttag
atacaaaaaacttctcttcagaaagcctgtattgtttcttctgcataaat
gttaccattgactttgcatccacggtaatgacctcaattaaatgatctgt
ccaatggaccttcactatgggacatgtcctagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79442902_79444085
seq2: B6Ng01-300B01.b_44_1208 (reverse)

seq1  AGCTTTCATTAAACTACAGGAACCCATGGCTGTTTGAGAATTGAGT-GAG  49
      ||||||||||||  |||  || || |||||    || | || |||| |||
seq2  AGCTTTCATTAACTTAC--GAGCCAATGGC---CTGTGGATCGAGTGGAG  45

seq1  ATCCTTTGAGGACTCAGGCA-TCTCTATACAAGGGACCTGTGACTGTGTT  98
      |||  | ||||| ||| ||| |||||||||||||   ||||||||| |||
seq2  ATC--TCGAGGATTCAAGCATTCTCTATACAAGG--ACTGTGACTGGGTT  91

seq1  CTCTAGATAATGTAGACAGCCCAACTAGTTAAAATATTATGGTTAGTTAA  148
      |||||||| |||||||||| |||||||| ||||||| ||||| ||| |||
seq2  CTCTAGAT-ATGTAGACAG-CCAACTAG-TAAAATA-TATGG-TAG-TAA  135

seq1  TTTTAAACTGTTTTGCCTTTTCTCTACTTTGTATTTAAATTTGTCCCTTT  198
      |||  |||||  ||||  ||||||||||||||||||||| ||||||||||
seq2  TTT--AACTG--TTGC--TTTCTCTACTTTGTATTTAAA-TTGTCCCTTT  178

seq1  CCAAAATGAA-GTATACTTTGTAGCAAGTAGTTGCCAAATTA-GCCCCTT  246
      |||||||||| |||||| |||||||||||||||||||||||| |||| ||
seq2  CCAAAATGAAGGTATAC-TTGTAGCAAGTAGTTGCCAAATTAGGCCCTTT  227

seq1  TAAAATCAGATATCTTGGAGTGAACGCCTTTACAAAGCACAGCATCATCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGATATCTTGGAGTGAACGCCTTTACAAAGCACAGCATCATCC  277

seq1  ACGCACAGGGACAAAGTCCCAGGGAGCGGATAGAAGTGTTGGTAGAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGGGACAAAGTCCCAGGGAGCGGATAGAAGTGTTGGTAGAAAAT  327

seq1  AGAAAAGACGCGCACTTCAAGTCTCATGGCGAATCTGACTGAACCGTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACGCGCACTTCAAGTCTCATGGCGAATCTGACTGAACCGTCAT  377

seq1  CACATCATTCTTATCTGTGATAAAAGGGATCTGGGGCTGGGTCAGGGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATTCTTATCTGTGATAAAAGGGATCTGGGGCTGGGTCAGGGGAC  427

seq1  ATGGCAGCTGCTGTTGAGCACCTCTGGGAGCACCTGTGCCTCAGCTTTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTGCTGTTGAGCACCTCTGGGAGCACCTGTGCCTCAGCTTTAC  477

seq1  CCATTACACATCTGAAAAACCTATTTAGAAACATTTTATTAGCAGCAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACACATCTGAAAAACCTATTTAGAAACATTTTATTAGCAGCAGCT  527

seq1  AAGTAAGTGGTGGGTTTCCTACTAAATGCCTGCTGGTGCTCCCATTTGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTGGTGGGTTTCCTACTAAATGCCTGCTGGTGCTCCCATTTGAC  577

seq1  AGCATGGAGTATATGATAAAGCCTCACTCACATTGCTATGTGTAGATCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGTATATGATAAAGCCTCACTCACATTGCTATGTGTAGATCTT  627

seq1  TGGTTTGTAATTATTTTTGCCTTGTATCTGGTTGATTTCCAATTTCATCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTAATTATTTTTGCCTTGTATCTGGTTGATTTCCAATTTCATCA  677

seq1  AAATTCCTATATTTGTGTCTTCCACAAACATTTATATAGCACACAGAGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTATATTTGTGTCTTCCACAAACATTTATATAGCACACAGAGAT  727

seq1  TATCATCTTCACAAGTTCTCCAATCACCTAGGAGAAAGGGTATACCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTCACAAGTTCTCCAATCACCTAGGAGAAAGGGTATACCTGTG  777

seq1  ATGGACTGTCTAGGTTAAACTTACCACCTTGAGACTATCTGTAAGGAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGTCTAGGTTAAACTTACCACCTTGAGACTATCTGTAAGGAATT  827

seq1  ATCTTGATTGTATTAATTGATTTGGAAAGACCTATCTTGATTGTGAATGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATTGTATTAATTGATTTGGAAAGACCTATCTTGATTGTGAATGG  877

seq1  GTCCATTCCATAGAAGAGGATCCTGTATAAAATGGAGAAGGTACCTGCGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTCCATAGAAGAGGATCCTGTATAAAATGGAGAAGGTACCTGCGT  927

seq1  ACCAACTTGCTCTCTCTCTAATTGCTGATGGACCAGCTGTTCCTGCCACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTGCTCTCTCTCTAATTGCTGATGGACCAGCTGTTCCTGCCACC  977

seq1  GTGGTTTCCATCATGATGAACTGGACCTTGAACTTTGAGCCACAGTAAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCCATCATGATGAACTGGACCTTGAACTTTGAGCCACAGTAAGC  1027

seq1  CCCTCAGCCCCGAAGTTGCTTTTGTGAGAGTATTCTTTCACAGCACAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCCCCGAAGTTGCTTTTGTGAGAGTATTCTTTCACAGCACAGAA  1077

seq1  GGGAAACTAAGATAGATGATGTCTGTCCCGGTTCCTAAGATGCTTTCAGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTAAGATAGATGATGTCTGTCCCGGTTCCTAAGATGCTTTCAGC  1127

seq1  CGGTAGCTAGTTGCTGTTCACCATGTGCTTGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCTAGTTGCTGTTCACCATGTGCTTGTGAATTC  1165

seq1: chr14_79253349_79254491
seq2: B6Ng01-300B01.g_68_1201

seq1  GAATTCCAGGCCAGCCTGGTCTACATAGTGAGTTGCCAAATGGGTTCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCTACATAGTGAGTTGCCAAATGGGTTCGTG  50

seq1  TAAGATTAATTACTTTTTATTATTTTAAACATAGAAGTTTTTTAAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTAATTACTTTTTATTATTTTAAACATAGAAGTTTTTTAAAATTA  100

seq1  CCTTTGAGTAATCCTTTTAAATAAGAAATATTCTGGAAAGTAAGATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGTAATCCTTTTAAATAAGAAATATTCTGGAAAGTAAGATTAAA  150

seq1  ACTTCCTACTTTAAATATTTTCTAAATTTAATTTCATTTGGAAGGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTACTTTAAATATTTTCTAAATTTAATTTCATTTGGAAGGTTTTA  200

seq1  GCCTTGAATTCCTTTAATTAAAAATTTCATCCAAGAGACATAATAATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAATTCCTTTAATTAAAAATTTCATCCAAGAGACATAATAATTGA  250

seq1  CTATAGCTATCTGTGGCAATTTTGTACAATATATGGATCTAGCTAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTATCTGTGGCAATTTTGTACAATATATGGATCTAGCTAATGTG  300

seq1  TTTTATTTGCATATTTGTTATATAAGTGCAGTTAAATACTCAGCAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGCATATTTGTTATATAAGTGCAGTTAAATACTCAGCAGTATT  350

seq1  GTTTTTGTACTTCTAAAATGAGCTCATTCTGGTTACTGAAATCATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTACTTCTAAAATGAGCTCATTCTGGTTACTGAAATCATTCTAG  400

seq1  CAGTAGTAATTATTCTAGAGTAGACGGCTACTCTAGTGGTAGTCGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAATTATTCTAGAGTAGACGGCTACTCTAGTGGTAGTCGCTGAG  450

seq1  TAGCCTATGTTTTAAGTCCACCTCCCCCACCCCCATCCTTTCCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATGTTTTAAGTCCACCTCCCCCACCCCCATCCTTTCCTTTCTTT  500

seq1  TCTTTTCTCTCTTCTTTCTTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCTTCTTTCTTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTT  550

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTAGGCAGGTCTCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTAGGCAGGTCTCACG  600

seq1  TAGTCTAGGCTAGCTTCAAGCTTTGTATGTTGCCAAGGCTGTCCTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAGGCTAGCTTCAAGCTTTGTATGTTGCCAAGGCTGTCCTTGAAC  650

seq1  TTTTGATCCTTCTACCTGCAGTATTTCTGCTGTGCAGGGATTAGAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCCTTCTACCTGCAGTATTTCTGCTGTGCAGGGATTAGAAGGTA  700

seq1  TACCTCCACGCTTGCCCTGTCTCTTTATATTTCTTGACAGGGTTTTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCACGCTTGCCCTGTCTCTTTATATTTCTTGACAGGGTTTTATGT  750

seq1  AGCTCTGGCTGGCCTGGAACTCACTATGCAGACCAGGCTGGCCTCAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCTGGCCTGGAACTCACTATGCAGACCAGGCTGGCCTCAAACT  800

seq1  CACTGAGAACCACTTGCCTCTGACTGCAGGGATTGAGGGTGTGGACTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAACCACTTGCCTCTGACTGCAGGGATTGAGGGTGTGGACTACC  850

seq1  CCATGTAGCTTTCTTTAATTATTTGA--TTTTTTTTTTTTTTTTGATATA  898
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CCATGTAGCTTTCTTTAATTATTTGATTTTTTTTTTTTTTTTTTGATATA  900

seq1  AAGTCTTGCAGTGGTGCCTTGGGCAGCCTGGAACTTGTGGCATCCTTCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGCAGTGGTGCCTTGGGCAGCCTGGAACTTGTGGCATCCTTCTG  950

seq1  GAATTATTCA-CAGCTGTGACTGCATCTGACTTTAAATTTCTTAACTTAG  997
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCACCAGCTGTGACTGCATCTGACTTTAAATTTCTTAACTTAG  1000

seq1  AATTAACAAAAAACTTCTCTTCAAGAAAAGCCTGTATTGGTTTCTTCTGC  1047
      |    ||||||||||||||||||   |||||||||||| |||||||||||
seq2  A---TACAAAAAACTTCTCTTCA--GAAAGCCTGTATT-GTTTCTTCTGC  1044

seq1  ATAAATTGTTACCCATTGACTTTTACATTCCACCGTAATGACCTCATTTA  1097
      ||||| ||||| |||||||| ||| || ||||| |||||||||||| |||
seq2  ATAAA-TGTTA-CCATTGAC-TTTGCA-TCCACGGTAATGACCTCAATTA  1090

seq1  AATAGATCTGTTTCAAATG--ACTTCACTATTGAGCATGTCCATAGAT  1143
      ||| ||||||  || ||||   ||||||||| |  ||||||| |||||
seq2  AAT-GATCTG--TCCAATGGACCTTCACTATGGGACATGTCC-TAGAT  1134