BAC Information

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BAC

Clone NameB6Ng01-300L09
Chromosome14 (Build37)
Map Location 32,332,956 - 32,443,510
singlet/doubletdoublet
Overlap geneColq, Hacl1
Upstream geneDcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1
Downstream geneBtd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300L09.bB6Ng01-300L09.g
ACCGA095218GA095219
length1,071978
definitionB6Ng01-300L09.b B6Ng01-300L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,332,956 - 32,334,024)(32,442,534 - 32,443,510)
sequence
gaattctttgactaaggtttgggatcacatttggctgggcaggtcttctt
ttgtggcgtcattcacctgtctggcacctggatgaaaaggctaggaggca
ttggtgaatatctgggaccatcaggcactgggccgacatggctttgcaca
gccatctttgcacagagggaagaagtggctccctctggatatattctgac
ccatgacctatctatgacctatttatgacctatgaccttacctgaggaag
tcatagtattctattggtcaaggcaggccctcttccattcaaaaggagga
agcctagacttcagagatgtaatggatgcatatttaaagccctgccccaa
cccccacttttcactcactcctgcctcacctactgttcccagttgcacct
tgggaaattggagacatcagggccttgcaagacaaagtgtcataaatgac
tccacaaaagttaggagaggtgggacagaaccattgctatttcccttgag
tggaccctcagatgggagccgctaagataaaggcaaagtggactcactcc
ctccgtagctcagtggagtgggtgttaggtctcaagcctaggacaagctg
ctgtgttgactatttaacatatcaaagcatacctggctgataggttctcc
cagcatccccaggtatacttagcataccctaccccttaccctaaacttcc
cccagcaaccctttcctaggtaatgcagtcattttggttgcctggtcttt
ggtctaccctttaccccttcggccagtctcctggccaaggccagggctat
tggtgggtggcttccctatccttccccctccccccaatctggcccagctc
agtttggccacattcactctggattgtcccagatgtgtctgcctctggct
atgctctcccttttatctacgaaataaaacaaaacaaaacaacaaaaaaa
aaccttcttctctgcatacctagaagtagtcatgtcctttttttattttt
ttcatttatgaaacaaggtctcactgtgttgatctgggtggctttgaact
tgtaatgtagcatcagctggc
gaattctttatctcctttaagatgaaaatatttttcaaaatatagataat
gaaggacatttctgttttaactataatttttttctccaactaagaatacc
ttaggaaaaattagtgttcattttatacttttaaattaatttcaagaaga
atatgataattgagacattaaaagtcttttgtttgtgacaaacacaggca
gtgaggagcagtatctatggtcgcccgggagcttgttacattgacattcc
tgcagattttgtgaccctccaggcgaacgtgacttctataaagtaagaat
tagtcacaattcctcctaaattttatgttatcatacttacttttaaaaaa
gaattatctagcagttcatcagctaatttccatgtgtctcaatagttttt
tgatgattttgtaactaaactgaatcctagccaaaaggcttagttctctt
aattaaaatagtattacctaacaactgtttgtggatttaattactaaatc
taattcttggagctttgtgaattcctcagttgaagttattcatccaggaa
cttcagatatatatctgcattaatgtatgggatattgacaggcatcttca
tgcaagcctagaggtaaggcagacagctgttgagaaacccagcagagaag
gcatctgtctagctgatcctagaaacgatgttctgaagtgtgtcgagggt
ttgtcctctacatgcatttcttaaatacactccgattgaaaagaggtcta
aaaaccacacactcggtatcattcgtcttgataaagatgctactggccag
gcggtggtggcgcacaccttttaatcccagcactcgggaggcagaggcag
gcagattttctgagtttgaggccagcctggtctacaaagttgagttcagg
acagccaggatgattcagagtaatcctgtctcagggaaaaaaaaaaagat
gctgccgtatctgtcagtcctctaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_32332956_32334024
seq2: B6Ng01-300L09.b_49_1119

seq1  GAATTCTTTGACTAAGGTTTGGGATCACATTTGGCTGGGCAGGTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTAAGGTTTGGGATCACATTTGGCTGGGCAGGTCTTCTT  50

seq1  TTGTGGCGTCATTCACCTGTCTGGCACCTGGATGAAAAGGCTAGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCGTCATTCACCTGTCTGGCACCTGGATGAAAAGGCTAGGAGGCA  100

seq1  TTGGTGAATATCTGGGACCATCAGGCACTGGGCCGACATGGCTTTGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAATATCTGGGACCATCAGGCACTGGGCCGACATGGCTTTGCACA  150

seq1  GCCATCTTTGCACAGAGGGAAGAAGTGGCTCCCTCTGGATATATTCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTTGCACAGAGGGAAGAAGTGGCTCCCTCTGGATATATTCTGAC  200

seq1  CCATGACCTATCTATGACCTATTTATGACCTATGACCTTACCTGAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCTATCTATGACCTATTTATGACCTATGACCTTACCTGAGGAAG  250

seq1  TCATAGTATTCTATTGGTCAAGGCAGGCCCTCTTCCATTCAAAAGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTATTCTATTGGTCAAGGCAGGCCCTCTTCCATTCAAAAGGAGGA  300

seq1  AGCCTAGACTTCAGAGATGTAATGGATGCATATTTAAAGCCCTGCCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGACTTCAGAGATGTAATGGATGCATATTTAAAGCCCTGCCCCAA  350

seq1  CCCCCACTTTTCACTCACTCCTGCCTCACCTACTGTTCCCAGTTGCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTTTTCACTCACTCCTGCCTCACCTACTGTTCCCAGTTGCACCT  400

seq1  TGGGAAATTGGAGACATCAGGGCCTTGCAAGACAAAGTGTCATAAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTGGAGACATCAGGGCCTTGCAAGACAAAGTGTCATAAATGAC  450

seq1  TCCACAAAAGTTAGGAGAGGTGGGACAGAACCATTGCTATTTCCCTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAAGTTAGGAGAGGTGGGACAGAACCATTGCTATTTCCCTTGAG  500

seq1  TGGACCCTCAGATGGGAGCCGCTAAGATAAAGGCAAAGTGGACTCACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTCAGATGGGAGCCGCTAAGATAAAGGCAAAGTGGACTCACTCC  550

seq1  CTCCGTAGCTCAGTGGAGTGGGTGTTAGGTCTCAAGCCTAGGACAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTAGCTCAGTGGAGTGGGTGTTAGGTCTCAAGCCTAGGACAAGCTG  600

seq1  CTGTGTTGACTATTTAACATATCAAAGCATACCTGGCTGATAGGTTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGACTATTTAACATATCAAAGCATACCTGGCTGATAGGTTCTCC  650

seq1  CAGCATCCCCAGGTATACTTAGCATACCCTACCCCTTACCCTAAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCCCAGGTATACTTAGCATACCCTACCCCTTACCCTAAACTTCC  700

seq1  CCCAGCAACCCTTTCCTAGGTAATGCAGTCATTTTGGTTGCCTGGTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCCTTTCCTAGGTAATGCAGTCATTTTGGTTGCCTGGTCTTT  750

seq1  GGTCTACCCTTTACCCCTTCGGCCAGTCTCCTGGCCAAGGCCAGGGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACCCTTTACCCCTTCGGCCAGTCTCCTGGCCAAGGCCAGGGCTAT  800

seq1  TGGTGGGTGGCTTCCCTATCCTTCCCCCTCCCCCCAATCTGGCCCAGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTGGCTTCCCTATCCTTCCCCCTCCCCCCAATCTGGCCCAGCTC  850

seq1  AGTTTGGCCACATTCACTCTGGATTGTCCCAGATGTGTCTGCCTCTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCCACATTCACTCTGGATTGTCCCAGATGTGTCTGCCTCTGGCT  900

seq1  ATGCTCTCCCTTTTATCTACGAAATAAAACAAAACAAAACAACAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCCCTTTTATCTACGAAATAAAACAAAACAAAACAACAAAAAAA  950

seq1  AACCTTCTTCTCTGCATACCTAGAAGTAGTCATGTCCTTTTTT--ATTTT  998
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AACCTTCTTCTCTGCATACCTAGAAGTAGTCATGTCCTTTTTTTATTTTT  1000

seq1  TTCATTTATGAAACAAGGTCTCACTGTGTTGATCTGGGTGGCTTTGAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATGAAACAAGGTCTCACTGTGTTGATCTGGGTGGCTTTGAACT  1050

seq1  TGTTATGTAGCATCAGCTGGC  1069
      ||| |||||||||||||||||
seq2  TGTAATGTAGCATCAGCTGGC  1071

seq1: chr14_32442534_32443510
seq2: B6Ng01-300L09.g_68_1045 (reverse)

seq1  CACTTAGAGGACTGACAGACTACAGCAGCATCTTTTTTTTTTTCCCTGAG  50
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  CACTTAGAGGACTGACAGA-TACGGCAGCATCTTTTTTTTTTTCCCTGAG  49

seq1  ACAGGGTTTCTCTGTATCGTCCTGGCTGTCCTGGAACTC-ACTTTGTAGA  99
      ||||| || ||||| ||| ||||||||||||| |||||| ||||||||||
seq2  ACAGGATTACTCTGAATCATCCTGGCTGTCCT-GAACTCAACTTTGTAGA  98

seq1  CCAGGCTGGCCTCAAACTCAG-AAATCTGCCTGCCTCTGCCTCCCGAGTG  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCAAACTCAGAAAATCTGCCTGCCTCTGCCTCCCGAGTG  148

seq1  CTGGGATT-AAAGGTGTGCGCCACCACCGCCTGGCCAGTAGCATCTTTAT  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAAGGTGTGCGCCACCACCGCCTGGCCAGTAGCATCTTTAT  198

seq1  CAAGACGAATGATACCGAGTGTGTGGTTTTTAGACCTCTTTTCAATCGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGAATGATACCGAGTGTGTGGTTTTTAGACCTCTTTTCAATCGGA  248

seq1  GTGTATTTAAGAAATGCATGTAGAGGACAAACCCTCGACACACTTCAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTAAGAAATGCATGTAGAGGACAAACCCTCGACACACTTCAGAA  298

seq1  CATCGTTTCTAGGATCAGCTAGACAGATGCCTTCTCTGCTGGGTTTCTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTTCTAGGATCAGCTAGACAGATGCCTTCTCTGCTGGGTTTCTCA  348

seq1  ACAGCTGTCTGCCTTACCTCTAGGCTTGCATGAAGATGCCTGTCAATATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTCTGCCTTACCTCTAGGCTTGCATGAAGATGCCTGTCAATATC  398

seq1  CCATACATTAATGCAGATATATATCTGAAGTTCCTGGATGAATAACTTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATTAATGCAGATATATATCTGAAGTTCCTGGATGAATAACTTCA  448

seq1  ACTGAGGAATTCACAAAGCTCCAAGAATTAGATTTAGTAATTAAATCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAATTCACAAAGCTCCAAGAATTAGATTTAGTAATTAAATCCAC  498

seq1  AAACAGTTGTTAGGTAATACTATTTTAATTAAGAGAACTAAGCCTTTTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTGTTAGGTAATACTATTTTAATTAAGAGAACTAAGCCTTTTGG  548

seq1  CTAGGATTCAGTTTAGTTACAAAATCATCAAAAAACTATTGAGACACATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTCAGTTTAGTTACAAAATCATCAAAAAACTATTGAGACACATG  598

seq1  GAAATTAGCTGATGAACTGCTAGATAATTCTTTTTTAAAAGTAAGTATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGCTGATGAACTGCTAGATAATTCTTTTTTAAAAGTAAGTATGA  648

seq1  TAACATAAAATTTAGGAGGAATTGTGACTAATTCTTACTTTATAGAAGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAAATTTAGGAGGAATTGTGACTAATTCTTACTTTATAGAAGTC  698

seq1  ACGTTCGCCTGGAGGGTCACAAAATCTGCAGGAATGTCAATGTAACAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCGCCTGGAGGGTCACAAAATCTGCAGGAATGTCAATGTAACAAGC  748

seq1  TCCCGGGCGACCATAGATACTGCTCCTCACTGCCTGTGTTTGTCACAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGCGACCATAGATACTGCTCCTCACTGCCTGTGTTTGTCACAAAC  798

seq1  AAAAGACTTTTAATGTCTCAATTATCATATTCTTCTTGAAATTAATTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTTTAATGTCTCAATTATCATATTCTTCTTGAAATTAATTTAA  848

seq1  AAGTATAAAATGAACACTAATTTTTCCTAAGGTATTCTTAGTTGGAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAATGAACACTAATTTTTCCTAAGGTATTCTTAGTTGGAGAAA  898

seq1  AAAATTATAGTTAAAACAGAAATGTCCTTCATTATCTATATTTTGAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGTTAAAACAGAAATGTCCTTCATTATCTATATTTTGAAAAA  948

seq1  TATTTTCATCTTAAAGGAGATAAAGAATTC  977
      ||||||||||||||||||||||||||||||
seq2  TATTTTCATCTTAAAGGAGATAAAGAATTC  978