BAC Information

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BAC

Clone NameB6Ng01-301D22
Chromosome14 (Build37)
Map Location 52,659,243 - 52,763,362
singlet/doubletdoublet
Overlap geneLOC667348, LOC667352, Hnrpc, Rpgrip1
Upstream geneRnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301D22.bB6Ng01-301D22.g
ACCGA095606GA095607
length1,121357
definitionB6Ng01-301D22.b B6Ng01-301D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,659,243 - 52,660,375)(52,763,006 - 52,763,362)
sequence
gaattctccgggtcctgatagcagtagaatggctctcctgaacggtctct
tccctcctgaagatacgccagtagctaaccattctcagacagctggtcta
cctcgtgatcatcaaacaccagatgagatgttctgtaagccaagtcctac
ctagcacatgacttgatggcactgcttttgctctggaactctgagcacaa
gccttcccagaaagaacaatgaaaacagaggcagactctgtgtccattga
ctaaatctggggacctcatggggtaaggagtgaggcagcccccctccctg
tgaaccctcaccaccagtctttcatgggcaggagactccccagagccatc
tttccctctgggcagctcacaatggggaagaagtgttcatgatgtgattt
taggaggcaagtgagaaaggggaataattggtcccacaaagacccattaa
agtgtttgttatctatcagagtctctgcccccaaggagtcaggggtctga
gaaactggggttgagggaatgaaccccaccagatccctggaaacttgtgg
atcattacttcaaagaaaaactttacctatctaaaggtagagctacaggt
gactatctgtgtttactttgtaacagaaaaatggattttccttctaggtc
aaataaccagtatacaccctgctttaaattaaatcaacacaaactttctg
tccttcatggttgtatgaatagtccaagtaagagccagctacttagtttc
tacatgtttggggattttctagagacctttggttattgttttccaattta
gtagacctggtcagggaaaatactttatatggcttgaatgtttctgaatt
cattgagtaaagacaacctatgatagtggctgtctcatgtccatttgaga
agaatatattcccctttgtgtgaagtactttataactgtcaattagctca
agttggttgatgacatggtttaaagagacacatccacttagtctcacact
ctctcttctaatggtcatggaagtagcatgtgagattctataatattgat
gttttctctgctatagtgcctcactgtgttagttcttgctggtcggaatt
gcactatgttagaacaggcta
aaagtgaccatcaaatacacatgggatgcccagtccggaagattgcagca
gatggacaatgacctgcccaagagtgcgcctgagtctgagggagaatctg
agggagagtctgagggagtgtctgagggagagtctgaggaggaggatgac
agctgactctgagagccaggactaaggccttccagcaagttcttcatctc
tgctggaaccccccaggacttctgtcaccactctaaagggacagctattt
attttgctagggacaaagacaagggaaggtgctagggaatgactttgttt
ctataaagaataaaattgtgtctgtgggatgttcccacgggggagggggg
atggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52659243_52660375
seq2: B6Ng01-301D22.b_46_1166

seq1  GAATTCTCCGGGTCCTGATAGCAGTAGAATGGCTCTCCTGAACGGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGGGTCCTGATAGCAGTAGAATGGCTCTCCTGAACGGTCTCT  50

seq1  TCCCTCCTGAAGATACGCCAGTAGCTAACCATTCTCAGACAGCTGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGAAGATACGCCAGTAGCTAACCATTCTCAGACAGCTGGTCTA  100

seq1  CCTCGTGATCATCAAACACCAGATGAGATGTTCTGTAAGCCAAGTCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGATCATCAAACACCAGATGAGATGTTCTGTAAGCCAAGTCCTAC  150

seq1  CTAGCACATGACTTGATGGCACTGCTTTTGCTCTGGAACTCTGAGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATGACTTGATGGCACTGCTTTTGCTCTGGAACTCTGAGCACAA  200

seq1  GCCTTCCCAGAAAGAACAATGAAAACAGAGGCAGACTCTGTGTCCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAGAAAGAACAATGAAAACAGAGGCAGACTCTGTGTCCATTGA  250

seq1  CTAAATCTGGGGACCTCATGGGGTAAGGAGTGAGGCAGCCCCCCTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGGGGACCTCATGGGGTAAGGAGTGAGGCAGCCCCCCTCCCTG  300

seq1  TGAACCCTCACCACCAGTCTTTCATGGGCAGGAGACTCCCCAGAGCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTCACCACCAGTCTTTCATGGGCAGGAGACTCCCCAGAGCCATC  350

seq1  TTTCCCTCTGGGCAGCTCACAATGGGGAAGAAGTGTTCATGATGTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTGGGCAGCTCACAATGGGGAAGAAGTGTTCATGATGTGATTT  400

seq1  TAGGAGGCAAGTGAGAAAGGGGAATAATTGGTCCCACAAAGACCCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCAAGTGAGAAAGGGGAATAATTGGTCCCACAAAGACCCATTAA  450

seq1  AGTGTTTGTTATCTATCAGAGTCTCTGCCCCCAAGGAGTCAGGGGTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGTTATCTATCAGAGTCTCTGCCCCCAAGGAGTCAGGGGTCTGA  500

seq1  GAAACTGGGGTTGAGGGAATGAACCCCACCAGATCCCTGGAAACTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGGGTTGAGGGAATGAACCCCACCAGATCCCTGGAAACTTGTGG  550

seq1  ATCATTACTTCAAAGAAAAACTTTACCTATCTAAAGGTAGAGCTACAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACTTCAAAGAAAAACTTTACCTATCTAAAGGTAGAGCTACAGGT  600

seq1  GACTATCTGTGTTTACTTTGTAACAGAAAAATGGATTTTCCTTCTAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCTGTGTTTACTTTGTAACAGAAAAATGGATTTTCCTTCTAGGTC  650

seq1  AAATAACCAGTATACACCCTGCTTTAAATTAAATCAACACAAACTTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAGTATACACCCTGCTTTAAATTAAATCAACACAAACTTTCTG  700

seq1  TCCTTCATGGTTGTATGAATAGTCCAAGTAAGAGCCAGCTACTTAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATGGTTGTATGAATAGTCCAAGTAAGAGCCAGCTACTTAGTTTC  750

seq1  TACATGTTTGGGGATTTTCTAGAGACCTTTGGTTATTGTTTTCCAATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTGGGGATTTTCTAGAGACCTTTGGTTATTGTTTTCCAATTTA  800

seq1  GTAGGACCTGGTCAGGGAAAATACTTTATATGGCTTGAATGTTTCTGAAT  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-GACCTGGTCAGGGAAAATACTTTATATGGCTTGAATGTTTCTGAAT  849

seq1  TCATTGAGTAAAAGACAACCTATGATAGTGGCTGTCTCATGTCCATTTGA  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGT-AAAGACAACCTATGATAGTGGCTGTCTCATGTCCATTTGA  898

seq1  GAAGAATATATTCCCCTTTGTTGTGAAGTACTTTATAACTGTCAATTAGC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGAATATATTCCCCTTTG-TGTGAAGTACTTTATAACTGTCAATTAGC  947

seq1  TCAAGTTGGTTGATGACATGGTTTAAAGAGAACACATCCACTTAGTCTTC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  TCAAGTTGGTTGATGACATGGTTTAAAGAG-ACACATCCACTTAGTC-TC  995

seq1  ACACTCTCCTTCTTCTATTGGTCATTGAAAGGTAGCATGTTGAGATTTCT  1050
      ||||||||  ||||||| ||||||| |||  |||||||| ||||| ||||
seq2  ACACTCTC--TCTTCTAATGGTCATGGAA--GTAGCATG-TGAGA-TTCT  1039

seq1  ATAATAATGGATGTTTTTCTTCTGCTATAGTGCCTCACTGTG-TAGTCCT  1099
      ||||| || ||||||||   |||||||||||||||||||||| |||| ||
seq2  ATAAT-ATTGATGTTTT--CTCTGCTATAGTGCCTCACTGTGTTAGTTCT  1086

seq1  GGCTGGTCCGGAATGCACTATG-TAGACCAGGCTA  1133
       ||||||| | | ||||||||| |||| |||||||
seq2  TGCTGGTCGGAATTGCACTATGTTAGAACAGGCTA  1121

seq1: chr14_52763006_52763362
seq2: B6Ng01-301D22.g_74_430 (reverse)

seq1  TTACCATCCCCCCTCCCCCGTGGGAACATCCCACAGACACAATTTTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCCCCCCTCCCCCGTGGGAACATCCCACAGACACAATTTTATTC  50

seq1  TTTATAGAAACAAAGTCATTCCCTAGCACCTTCCCTTGTCTTTGTCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAAACAAAGTCATTCCCTAGCACCTTCCCTTGTCTTTGTCCCTA  100

seq1  GCAAAATAAATAGCTGTCCCTTTAGAGTGGTGACAGAAGTCCTGGGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAAATAGCTGTCCCTTTAGAGTGGTGACAGAAGTCCTGGGGGGT  150

seq1  TCCAGCAGAGATGAAGAACTTGCTGGAAGGCCTTAGTCCTGGCTCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGAGATGAAGAACTTGCTGGAAGGCCTTAGTCCTGGCTCTCAGA  200

seq1  GTCAGCTGTCATCCTCCTCCTCAGACTCTCCCTCAGACACTCCCTCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGTCATCCTCCTCCTCAGACTCTCCCTCAGACACTCCCTCAGAC  250

seq1  TCTCCCTCAGATTCTCCCTCAGACTCAGGCGCACTCTTGGGCAGGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCAGATTCTCCCTCAGACTCAGGCGCACTCTTGGGCAGGTCATT  300

seq1  GTCCATCTGCTGCAATCTTCCGGACTGGGCATCCCATGTGTATTTGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTGCTGCAATCTTCCGGACTGGGCATCCCATGTGTATTTGATGG  350

seq1  TCACTTT  357
      |||||||
seq2  TCACTTT  357