BAC Information

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BAC

Clone NameB6Ng01-301F09
Chromosome14 (Build37)
Map Location 49,743,392 - 49,856,698
singlet/doubletdoublet
Overlap geneLOC218997, Nat12, 1700011H14Rik
Upstream genePeli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik
Downstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301F09.bB6Ng01-301F09.g
ACCGA095672GA095673
length1,1691,000
definitionB6Ng01-301F09.b B6Ng01-301F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,855,541 - 49,856,698)(49,743,392 - 49,744,400)
sequence
gaattcagtgatgacaggcacatctgtaatgacaggcacatctgtaaagc
cagcagactgggattggaggggctttgtgtaaaaacagatgttcccaggg
gtgcccagcccagccatttagtggaaacagttacaagatcagtgagagac
cttgtctcaaaaacaaaaagtaaggttgagagctgtagaataacatctga
catcaacccttagtctctacaggtatatgcagtgatgtgtgtgtgcgcac
acgtatacacacacacacacacacacacacacactgggggcaaggagaaa
cttagacaggcccacggataaactcctgctcagtttcagtgaacctttta
agctccaataaatgtcttccataaaccttactccctgcttaaaaaaaaaa
aaaatgaccctaccatttgttagcagtttgtacttttctctctttttttt
aaagatttatttatttattatatgtaagtacactgtagctgtcttcagac
attccagaagagggcatcaggtctcattatggatggttgtgagccaccat
gtggttgctgggatttgaactcaggaccttcagaagagcagtcagtgctc
ttaaccactgaaccatcttgccagcccagtttgtacttttctcttaagca
tgccttgtcacccatgattactgaaggaacttcccccagagacctcccta
aggactgggacagcactgggtggttaagggaagatcaggtgtgtctccag
tctctttcatctctactagtctaagaccccagctatttggtaactttaaa
cacgatccctcaatccctgaccaagattttgattaataactcactgaaga
cactgagctagaacaataaagaaccctgtaggtcaaaaagccctttcccc
acagacgacagtggtgacactgggtatgaccttccctgtgtgtgcccagg
aggaagtgccgctttccacacaatgctcgggtagtttaattgtaccttgc
tttttgtgtttcatcgtcttcatggtgtgagggatgctgacacttcttaa
tttttggacttctagagcctggacccattgaccttgccacagccattacc
ttctgaatgccttctggtggcatcagaaaggcagaaccaaggtccaacac
aaggttgagcctggggcgg
gaattccaggtcaccacaggctatatagtaagtttgaagtcaacctgggc
tacatgagactgtctcaaaaacaaaacaaagttaagtgaacctgtaatac
cagcgctaagggggctgggacgggagggttgagctcaaggctaacttgga
ttacctagcaagaccctgtctcaaactggggaaaaattattgaaatagat
caatagcacgattaagatggcggagaaaagagttgacaaacttgaataag
cattagtagaatgatcctgttggaagaacagctccaggtgcttgctgagc
tcagtgcacgttattggagtcctgaagaaggaggtgggggaagattggtg
cagaccttttattgtataatgtatgaggaatgcccacattgtaagatgtg
cacatacagtcaagaagccccatgtatggtaaacagaagaaatccaaaga
catcttggccaggcagaatgaaagtagtgaaaccaaacgatggaaatggc
atgactagaccacgcaggcgcaaagcttgcagtagtggctaactgctact
gcctcaacacaggcggcaaagagatgggcctggcagacgcttccagtgct
gggaaaggaatcctcccgcatgtcaggcaagtgctctacccattgtgggc
agaatcatgtttttatgtagcgcaggcatagttgttttctgtcctggtgg
cttctggcctcgaccagctggtggttcctccactttgctagttcatattc
cccagccactttaagaaagaagcaaagatgtggaagccatggagaagatg
ccagctttaggatcatggataatcaagtctggtggtttaaattcttgtct
tgtttcctgctccgcctcgcctccccaggcccttttccaaccggttgtcc
ccccccgtccttttcaagggctctggctagctgactgtttcttcacccat
cttcccggtcgcattttcgggggaaatgctctctaactaggaactggagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49855541_49856698
seq2: B6Ng01-301F09.b_50_1218 (reverse)

seq1  CCGCCCCA-GCTCACCTTTGTGTTGGA-CTTTGTTCTGCCTTCTTGATGG  48
      |||||||| ||||| | |||||||||| ||| ||||||||||  ||||| 
seq2  CCGCCCCAGGCTCAACCTTGTGTTGGACCTTGGTTCTGCCTTTCTGATGC  50

seq1  CA-CAGAAGCCTTTCAG-AGGTAATTGCTTGTGGC-AGGTCAATGGGTTC  95
      || |||||| | ||||| ||||||| || |||||| |||||||||||| |
seq2  CACCAGAAGGCATTCAGAAGGTAATGGC-TGTGGCAAGGTCAATGGGTCC  99

seq1  AAGCTTCTAGAAGTCCAAAATTTA--GAGTGTTCAGCATCCCTCACACCA  143
      | || ||||||||||||||| |||   |||| ||||||||||||||||||
seq2  AGGC-TCTAGAAGTCCAAAAATTAAGAAGTG-TCAGCATCCCTCACACCA  147

seq1  TG-AGACGATGAAACAC-AAAAGC-AGGTAC-ATTAAACTACCCGAGCAT  189
      || |||||||||||||| |||||| |||||| ||||||||||||||||||
seq2  TGAAGACGATGAAACACAAAAAGCAAGGTACAATTAAACTACCCGAGCAT  197

seq1  TGTGT-GAAAGCGGCACTTCCTCCTGGGCACACACAGGGAAGGTCATACC  238
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAAAGCGGCACTTCCTCCTGGGCACACACAGGGAAGGTCATACC  247

seq1  CAGTGTCACCACTGTCGTCTGTGGG--AAGGGCTTTTTGACCTACAGGGT  286
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  CAGTGTCACCACTGTCGTCTGTGGGGAAAGGGCTTTTTGACCTACAGGGT  297

seq1  TCTTTATTGTTCTAGCTCAGTGTCTTCAGTGAGTTATTAATCAAAATCTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGTTCTAGCTCAGTGTCTTCAGTGAGTTATTAATCAAAATCTT  347

seq1  GGTCAGGGATTGAGGGATCGTGTTTAAAGTTACCAAATAGCTGGGGTCTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGATTGAGGGATCGTGTTTAAAGTTACCAAATAGCTGGGGTCTT  397

seq1  AGACTAGTAGAGATGAAAGAGACTGGAGACACACCTGATCTTCCCTTAAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTAGAGATGAAAGAGACTGGAGACACACCTGATCTTCCCTTAAC  447

seq1  CACCCAGTGCTGTCCCAGTCCTTAGGGAGGTCTCTGGGGGAAGTTCCTTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGCTGTCCCAGTCCTTAGGGAGGTCTCTGGGGGAAGTTCCTTC  497

seq1  AGTAATCATGGGTGACAAGGCATGCTTAAGAGAAAAGTACAAACTGGGCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCATGGGTGACAAGGCATGCTTAAGAGAAAAGTACAAACTGGGCT  547

seq1  GGCAAGATGGTTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATGGTTCAGTGGTTAAGAGCACTGACTGCTCTTCTGAAGGTCCT  597

seq1  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAG  647

seq1  ACCTGATGCCCTCTTCTGGAATGTCTGAAGACAGCTACAGTGTACTTACA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGCCCTCTTCTGGAATGTCTGAAGACAGCTACAGTGTACTTACA  697

seq1  TATAATAAATAAATAAATCTTTAAAAAAAAGAGAGAAAAGTACAAACTGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATAAATAAATCTTTAAAAAAAAGAGAGAAAAGTACAAACTGC  747

seq1  TAACAAATGGTAGGGTCATTTTTTTTTTTTTTAAGCAGGGAGTAAGGTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGGTAGGGTCATTTTTTTTTTTTTTAAGCAGGGAGTAAGGTTT  797

seq1  ATGGAAGACATTTATTGGAGCTTAAAAGGTTCACTGAAACTGAGCAGGAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGACATTTATTGGAGCTTAAAAGGTTCACTGAAACTGAGCAGGAG  847

seq1  TTTATCCGTGGGCCTGTCTAAGTTTCTCCTTGCCCCCAGTGTGTGTGTGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCGTGGGCCTGTCTAAGTTTCTCCTTGCCCCCAGTGTGTGTGTGT  897

seq1  GTGTGTGTGTGTGTGTATACGTGTGCGCACACACACATCACTGCATATAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATACGTGTGCGCACACACACATCACTGCATATAC  947

seq1  CTGTAGAGACTAAGGGTTGATGTCAGATGTTATTCTACAGCTCTCAACCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGACTAAGGGTTGATGTCAGATGTTATTCTACAGCTCTCAACCT  997

seq1  TACTTTTTGTTTTTGAGACAAGGTCTCTCACTGATCTTGTAACTGTTTCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTGTTTTTGAGACAAGGTCTCTCACTGATCTTGTAACTGTTTCC  1047

seq1  ACTAAATGGCTGGGCTGGGCACCCCTGGGAACATCTGTTTTTACACAAAG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGGCTGGGCTGGGCACCCCTGGGAACATCTGTTTTTACACAAAG  1097

seq1  CCCCTCCAATCCCAGTCTGCTGGCTTTACAGATGTGCCTGTCATTACAGA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAATCCCAGTCTGCTGGCTTTACAGATGTGCCTGTCATTACAGA  1147

seq1  TGTGCCTGTCATCACTGAATTC  1158
      ||||||||||||||||||||||
seq2  TGTGCCTGTCATCACTGAATTC  1169

seq1: chr14_49743392_49744400
seq2: B6Ng01-301F09.g_66_1065

seq1  GAATTCCAGGTCACCACAGGCTATATAGTAAGTTTGAAGTCAACCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCACCACAGGCTATATAGTAAGTTTGAAGTCAACCTGGGC  50

seq1  TACATGAGACTGTCTCAAAAACAAAACAAAGTTAAGTGAACCTGTAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGACTGTCTCAAAAACAAAACAAAGTTAAGTGAACCTGTAATAC  100

seq1  CAGCGCTAAGGGGGCTGGGACGGGAGGGTTGAGCTCAAGGCTAACTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTAAGGGGGCTGGGACGGGAGGGTTGAGCTCAAGGCTAACTTGGA  150

seq1  TTACCTAGCAAGACCCTGTCTCAAACTGGGGAAAAATTATTGAAATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGCAAGACCCTGTCTCAAACTGGGGAAAAATTATTGAAATAGAT  200

seq1  CAATAGCACGATTAAGATGGCGGAGAAAAGAGTTGACAAACTTGAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCACGATTAAGATGGCGGAGAAAAGAGTTGACAAACTTGAATAAG  250

seq1  CATTAGTAGAATGATCCTGTTGGAAGAACAGCTCCAGGTGCTTGCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTAGAATGATCCTGTTGGAAGAACAGCTCCAGGTGCTTGCTGAGC  300

seq1  TCAGTGCACGTTATTGGAGTCCTGAAGAAGGAGGTGGGGGAAGATTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCACGTTATTGGAGTCCTGAAGAAGGAGGTGGGGGAAGATTGGTG  350

seq1  CAGACCTTTTATTGTATAATGTATGAGGAATGCCCACATTGTAAGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTTATTGTATAATGTATGAGGAATGCCCACATTGTAAGATGTG  400

seq1  CACATACAGTCAAGAAGCCCCATGTATGGTAAACAGAAGAAATCCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGTCAAGAAGCCCCATGTATGGTAAACAGAAGAAATCCAAAGA  450

seq1  CATCTTGGCCAGGCAGAATGAAAGTAGTGAAACCAAACGATGGAAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGCCAGGCAGAATGAAAGTAGTGAAACCAAACGATGGAAATGGC  500

seq1  ATGACTAGACCACGCAGGCGCAAAGCTTGCAGTAGTGGCTAACTGCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGACCACGCAGGCGCAAAGCTTGCAGTAGTGGCTAACTGCTACT  550

seq1  GCCTCAACACAGGCGGCAAAGAGATGGGCCTGGCAGACGCTTCCAGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAACACAGGCGGCAAAGAGATGGGCCTGGCAGACGCTTCCAGTGCT  600

seq1  GGGAAAGGAATCCTCCCGCATGTCAGGCAAGTGCTCTACCCATTGTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGAATCCTCCCGCATGTCAGGCAAGTGCTCTACCCATTGTGGGC  650

seq1  AGAATCATGTTTTTATGTAGCGCAGGGCATAGTTGTTTTCTGTCCT-GTG  699
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  AGAATCATGTTTTTATGTAGCGCA-GGCATAGTTGTTTTCTGTCCTGGTG  699

seq1  GCTTCTGGCCTCGACCAGCTGGT-GTTCCTCCACTTTGCTAGTTCAATAT  748
      ||||||||||||||||||||||| ||||||||||||||||||||||   |
seq2  GCTTCTGGCCTCGACCAGCTGGTGGTTCCTCCACTTTGCTAGTTCATATT  749

seq1  CCCCAGCCACTTT-AGAAAG-AGCAAAGATGT-GAAGCCAT-GAGAAGAT  794
      ||||||||||||| |||||| ||||||||||| |||||||| ||||||||
seq2  CCCCAGCCACTTTAAGAAAGAAGCAAAGATGTGGAAGCCATGGAGAAGAT  799

seq1  GCCAAGCTTTA-GATCATGGATAATCAAGTCTGGT-GTTTAAATTC-TGT  841
      ||| ||||||| ||||||||||||||||||||||| |||||||||| |||
seq2  GCC-AGCTTTAGGATCATGGATAATCAAGTCTGGTGGTTTAAATTCTTGT  848

seq1  C-TGTCTCCTGCTC--GCTCG-CTCCCCCGCCCCTTTCTCCACACCCGTG  887
      | ||| ||||||||   |||| |||||| | |||||| |||| ||| || 
seq2  CTTGTTTCCTGCTCCGCCTCGCCTCCCCAGGCCCTTT-TCCA-ACCGGT-  895

seq1  TGCCCCCCCCCCCCGTCTCTTTCTCAGTGTCTCTGTCTGTCTGTCTGTTT  937
      ||    ||||||||||| |||| |||  | ||||| ||  ||| ||||||
seq2  TG---TCCCCCCCCGTC-CTTT-TCAAGGGCTCTGGCTAGCTGACTGTTT  940

seq1  CTTCCTCCCTTCTTTCCCGTTCTGTCATTTTTTGGTGGGGAAAAATGCCC  987
      ||| | ||| || |||||| ||   |||||     | |||  |||||| |
seq2  CTT-CACCCATC-TTCCCGGTC--GCATTT-----TCGGGGGAAATGCTC  981

seq1  TCATAACTAGGAAACATGGAGT  1009
      || ||||||||||   ||||||
seq2  TC-TAACTAGGAA--CTGGAGT  1000