BAC Information

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BAC

Clone NameB6Ng01-301G18
Chromosome14 (Build37)
Map Location 92,907,402 - 93,015,080
singlet/doubletdoublet
Overlap geneLOC638252
Upstream geneEG665377
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301G18.bB6Ng01-301G18.g
ACCGA095738GA095739
length1,1401,138
definitionB6Ng01-301G18.b B6Ng01-301G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,013,924 - 93,015,080)(92,907,402 - 92,908,543)
sequence
gaattccagccatctgtagcacacgctaaactgcgaaacatgatgtgtgt
ggacatcctgagtcatgagagcttctctggcttcctacgcattttatgta
ttcacagaaattctgcacttgcaagcctctcacccatgtgcagtggacta
tagcaaaaaataaccatctacttttcttgtaaagtctttgctttattaga
tttgttcaaatctgaaaaaattttttattgtttttgcactgtactgtgaa
ttctaccacaggtgagtaacccttgtaacatttcttctgccaaattgttc
aggttcacaattgacagagaatcaacaaagcccaggattagcttgcaacc
cctgaaaccatggaccgcctaaatcctccctcctttattaagttggttat
ttgggaattgtgtcatggtaaagcaaaaaatgacaaacagaaatagcatg
ctttcttctttcttagtttcattctttgtttctttgtttcttgcttttct
tttcatctatctaactatgtatccatctatctatctacatatctgtctct
ctcaaatctatttatttattggagacaagttttcttgatgtagctctggt
tgtcttagaacttgctttatagatcacactgacctcaaactcagagatcc
tcttgcctttgcctctagggtgctggaactaaagaaggcactcctaccac
gtggcttctttttcctttcttccttgacctgagcataaaataatattgga
cgaataagatgatgtatggaaaggcccaaacaaaacaaaacaaaacaaaa
aaccaaaaagttatctaatttagtacatggccctcggataagtgtgtcat
atttacccaagtaaaagcagcaaagcgccatatacttgctcttgtagctt
agatgtgcatagaggagtgaggaagttgctgagttctagctctggtagag
ttcaaaacttgagagatgtgtggtacagtgaaagaagacttgaccaaagt
gcagttcacaccacactgcactgagactactcagcacctttatttatgca
tctctttgttcacagctgaaagattttgcattccatttttcattttctca
tgtacaggtctttgagacttccatgttactatatgtacac

gaattcattcaccttgctgttcttcactgatcatcatttgtcatgacttc
ctagagagcaacaccaccaaagaaattctggtgatatttgggggactttt
ttagactcgggccaattggcaaagccttgcagtttcttctggattgagtt
gccattgctgatttgttaaaggtgtttgtgagtgggattgagttgccatt
gcagatttgtttgaaatgaactgctgatatcctaacaaggcagattggat
ttgctccaaagaactatttctaaacagttccgcatcctcctttgcctatt
aaaatttctgttccactacctctggtgggtgctgggatagaagggaggtt
aaagcattttagaatccttattagaagcaagttttgaaaaatataagcca
aaaatgccactttctaaaaaaaagttttgtttttaattcaatgaattaac
ttagtacccacattatggttcaaactcaccatgcctgcaaactaaacttc
tacttttaaggaaaaaaaaaagaaagaaagaaaagaaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagagagaaagaaagaaaacataacagtctcatagaa
aaccacagtatcggtgatcaaggatgagttgagtagatctaatgaatatt
aaaaaatacatgaatacttactagatccacttttttaactttaatggcca
gacacaaatatgcatagactcagtattggttttatgttctcctaattctt
ctttcatattgaattcatcttgagaggtaacagttaatgagatatattat
tttcttctatacttggcatagtttaaaccaaatgaatataaataggtagc
tgtccatggtcatgtaaatgttgggttaaccctttgtcacatgctctggg
gaaaatttgctaaacattcgacctctctgctatttttttcgcctcttaaa
tttataaaaaattctgttctttggaaagttagtagtcatcatgtctgtta
gtattatcttacatgtattaaatatttatagcactgcagagagggtctag
atgttaaggtactctgtctacgaagactggatatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93013924_93015080
seq2: B6Ng01-301G18.b_44_1183 (reverse)

seq1  GTGTACATTATTGTTAAACATAGGAAGTCCTCAAAAGACACTGTACATGA  50
      ||||||| ||| ||  ||||| |||||| ||| |||||| ||||||||||
seq2  GTGTACA-TATAGT--AACAT-GGAAGT-CTC-AAAGAC-CTGTACATGA  43

seq1  GAAAAATGAAAAAATGAATGCAAAACCTTTCAGCTGTGAACAAAGAGATG  100
      | |||||||||||  |||||||||| ||||||||||||||||||||||||
seq2  G-AAAATGAAAAATGGAATGCAAAATCTTTCAGCTGTGAACAAAGAGATG  92

seq1  CATAAATAAAGGTGGCCTGAGTAGTCTCAGTGCCAGTGT-GTGTGAACTG  149
      ||||||||||||||  |||||||||||||||| |||||| ||||||||||
seq2  CATAAATAAAGGTG--CTGAGTAGTCTCAGTG-CAGTGTGGTGTGAACTG  139

seq1  CACCTTTTGGTCAAAGTCTTCTTTCACCTGTACCACACATCCTCCTCCAA  199
      |||  ||||||| ||||||||||||| ||||||||||||| |||   |||
seq2  CAC--TTTGGTC-AAGTCTTCTTTCA-CTGTACCACACAT-CTC--TCAA  182

seq1  GTTTTGAACTCTACCAGAGCTAGAACTCAGCAACTTCCTCACTCCTCTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAACTCTACCAGAGCTAGAACTCAGCAACTTCCTCACTCCTCTAT  232

seq1  GCACATCTAAGCTACAAGAGCAAGTATATGGCGCTTTGCTGCTTTTACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTAAGCTACAAGAGCAAGTATATGGCGCTTTGCTGCTTTTACTT  282

seq1  GGGTAAATATGACACACTTATCCGAGGGCCATGTACTAAATTAGATAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATATGACACACTTATCCGAGGGCCATGTACTAAATTAGATAACT  332

seq1  TTTTGGTTTTTTGTTTTGTTTTGTTTTGTTTGGGCCTTTCCATACATCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTTGTTTTGTTTTGTTTTGTTTGGGCCTTTCCATACATCAT  382

seq1  CTTATTCGTCCAATATTATTTTATGCTCAGGTCAAGGAAGAAAGGAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCGTCCAATATTATTTTATGCTCAGGTCAAGGAAGAAAGGAAAAA  432

seq1  GAAGCCACGTGGTAGGAGTGCCTTCTTTAGTTCCAGCACCCTAGAGGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACGTGGTAGGAGTGCCTTCTTTAGTTCCAGCACCCTAGAGGCAA  482

seq1  AGGCAAGAGGATCTCTGAGTTTGAGGTCAGTGTGATCTATAAAGCAAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAGGATCTCTGAGTTTGAGGTCAGTGTGATCTATAAAGCAAGTT  532

seq1  CTAAGACAACCAGAGCTACATCAAGAAAACTTGTCTCCAATAAATAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACAACCAGAGCTACATCAAGAAAACTTGTCTCCAATAAATAAATA  582

seq1  GATTTGAGAGAGACAGATATGTAGATAGATAGATGGATACATAGTTAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGAGAGACAGATATGTAGATAGATAGATGGATACATAGTTAGAT  632

seq1  AGATGAAAAGAAAAGCAAGAAACAAAGAAACAAAGAATGAAACTAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAGAAAAGCAAGAAACAAAGAAACAAAGAATGAAACTAAGAAA  682

seq1  GAAGAAAGCATGCTATTTCTGTTTGTCATTTTTTGCTTTACCATGACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGCATGCTATTTCTGTTTGTCATTTTTTGCTTTACCATGACACA  732

seq1  ATTCCCAAATAACCAACTTAATAAAGGAGGGAGGATTTAGGCGGTCCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAATAACCAACTTAATAAAGGAGGGAGGATTTAGGCGGTCCATG  782

seq1  GTTTCAGGGGTTGCAAGCTAATCCTGGGCTTTGTTGATTCTCTGTCAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGGTTGCAAGCTAATCCTGGGCTTTGTTGATTCTCTGTCAATT  832

seq1  GTGAACCTGAACAATTTGGCAGAAGAAATGTTACAAGGGTTACTCACCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTGAACAATTTGGCAGAAGAAATGTTACAAGGGTTACTCACCTG  882

seq1  TGGTAGAATTCACAGTACAGTGCAAAAACAATAAAAAATTTTTTCAGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAATTCACAGTACAGTGCAAAAACAATAAAAAATTTTTTCAGATT  932

seq1  TGAACAAATCTAATAAAGCAAAGACTTTACAAGAAAAGTAGATGGTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAATCTAATAAAGCAAAGACTTTACAAGAAAAGTAGATGGTTATT  982

seq1  TTTTGCTATAGTCCACTGCACATGGGTGAGAGGCTTGCAAGTGCAGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATAGTCCACTGCACATGGGTGAGAGGCTTGCAAGTGCAGAATT  1032

seq1  TCTGTGAATACATAAAATGCGTAGGAAGCCAGAGAAGCTCTCATGACTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATACATAAAATGCGTAGGAAGCCAGAGAAGCTCTCATGACTCA  1082

seq1  GGATGTCCACACACATCATGTTTCGCAGTTTAGCGTGTGCTACAGATGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCACACACATCATGTTTCGCAGTTTAGCGTGTGCTACAGATGGC  1132

seq1  TGGAATTC  1157
      ||||||||
seq2  TGGAATTC  1140


seq1: chr14_92907402_92908543
seq2: B6Ng01-301G18.g_68_1205

seq1  GAATTCATTCACCTTGCTGTTCTTCACTGATCATCATTTGTCATGACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCTTGCTGTTCTTCACTGATCATCATTTGTCATGACTTC  50

seq1  CTAGAGAGCAACACCACCAAAGAAATTCTGGTGATATTTGGGGGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGCAACACCACCAAAGAAATTCTGGTGATATTTGGGGGACTTTT  100

seq1  TTAGACTCGGGCCAATTGGCAAAGCCTTGCAGTTTCTTCTGGATTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCGGGCCAATTGGCAAAGCCTTGCAGTTTCTTCTGGATTGAGTT  150

seq1  GCCATTGCTGATTTGTTAAAGGTGTTTGTGAGTGGGATTGAGTTGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCTGATTTGTTAAAGGTGTTTGTGAGTGGGATTGAGTTGCCATT  200

seq1  GCAGATTTGTTTGAAATGAACTGCTGATATCCTAACAAGGCAGATTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTGTTTGAAATGAACTGCTGATATCCTAACAAGGCAGATTGGAT  250

seq1  TTGCTCCAAAGAACTATTTCTAAACAGTTCCGCATCCTCCTTTGCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCAAAGAACTATTTCTAAACAGTTCCGCATCCTCCTTTGCCTATT  300

seq1  AAAATTTCTGTTCCACTACCTCTGGTGGGTGCTGGGATAGAAGGGAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTGTTCCACTACCTCTGGTGGGTGCTGGGATAGAAGGGAGGTT  350

seq1  AAAGCATTTTAGAATCCTTATTAGAAGCAAGTTTTGAAAAATATAAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTTAGAATCCTTATTAGAAGCAAGTTTTGAAAAATATAAGCCA  400

seq1  AAAATGCCACTTTCTAAAAAAAAGTTTTGTTTTTAATTCAATGAATTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCACTTTCTAAAAAAAAGTTTTGTTTTTAATTCAATGAATTAAC  450

seq1  TTAGTACCCACATTATGGTTCAAACTCACCATGCCTGCAAACTAAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACCCACATTATGGTTCAAACTCACCATGCCTGCAAACTAAACTTC  500

seq1  TACTTTTAAGGAAAAAAAAAAGAAAGAAAGAAAAGA----AAAGAAAGAA  546
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  TACTTTTAAGGAAAAAAAAAAGAAAGAAAGAAAAGAAAAGAAAGAAAGAA  550

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  600

seq1  AAAGAAAGAAAGAAAGAGAGAAAGAAAGAAAACATAACAGTCTCATAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAGAGAAAGAAAGAAAACATAACAGTCTCATAGAA  650

seq1  AACCACAGTATCGGTGATCAAGGATGAGTTGAGTAGATCTAATGAATATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGTATCGGTGATCAAGGATGAGTTGAGTAGATCTAATGAATATT  700

seq1  AAAAAATACATGAATACTTACTAGATCCACTTTTTTAACTTTAATGGCCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACATGAATACTTACTAGATCCACTTTTTTAACTTTAATGGCCA  750

seq1  GACACAAATATGCATAGACTCAGTATTGGTTTTATGTTCTCCTAATTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATATGCATAGACTCAGTATTGGTTTTATGTTCTCCTAATTCTT  800

seq1  CTTTCATATTGAATTCATCTTGAGAGGTAACAGTTAATGAGATATATTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATATTGAATTCATCTTGAGAGGTAACAGTTAATGAGATATATTAT  850

seq1  TTTCTTCTATACTTGGCATAGTTTAAACCAAATGAATATAAATAGGTAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATACTTGGCATAGTTTAAACCAAATGAATATAAATAGGTAGC  900

seq1  TGTCCATGGTCATGTAAATGTT-GGTTAA-CCTTTGTCACATGCTCTGGG  944
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  TGTCCATGGTCATGTAAATGTTGGGTTAACCCTTTGTCACATGCTCTGGG  950

seq1  GAAAATTTGCTAAACATTCGGACCTCTCTGCTA-TTTTTTCGCCTCTAAA  993
      ||||||||||||||||||| ||||||||||||| ||||||||||||| ||
seq2  GAAAATTTGCTAAACATTC-GACCTCTCTGCTATTTTTTTCGCCTCTTAA  999

seq1  ATTTAT-AAAAATTCTGTTTCTTTGAAAGTTTAGTAAGTCAATCATGTCT  1042
      |||||| |||||||||| ||||||| ||  ||||| |||| |||||||||
seq2  ATTTATAAAAAATTCTG-TTCTTTGGAAAGTTAGT-AGTC-ATCATGTCT  1046

seq1  GTTAGTA-TATCTTACATGTATTAAAATATTTTATTAGGCACTGCAGAGA  1091
      ||||||| ||||||||||||||| ||||| |||||   ||||||||||||
seq2  GTTAGTATTATCTTACATGTATT-AAATA-TTTAT--AGCACTGCAGAGA  1092

seq1  GGGTCTAGATGTTAAAGTACTCTTGTTCTTACAGAAGACTGAATATAGAG  1141
      ||||||||||||||| |||||| |||   ||| |||||||| |||| |||
seq2  GGGTCTAGATGTTAAGGTACTC-TGT--CTAC-GAAGACTGGATAT-GAG  1137

seq1  C  1142
      |
seq2  C  1138


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