BAC Information

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BAC

Clone NameB6Ng01-301N11
Chromosome14 (Build37)
Map Location 87,030,410 - 87,188,134
singlet/doubletdoublet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N11.bB6Ng01-301N11.g
ACCGA096050GA096051
length1,169766
definitionB6Ng01-301N11.b B6Ng01-301N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,030,410 - 87,031,582)(87,187,372 - 87,188,134)
sequence
gaattcaataatctgttcatttgctagagtctctccctgagactccactg
atggttgatttaatcagagcagccagaccagtgcaagggcatttcttgtg
tttgcttaaatgccctgatgccaaaacacattatcaagatggaaggtctt
tattccattggtgacaatggccatggttaacagtaccctcttggcatatg
acaggaaaagaactagggcatatggttcataacccttgtttggccttcag
ctgaagcctctcaattgtcatcttctataggagattcttgcattccagga
agtgggtcagagggctgcagagattgctcagtgatagagtgtttctccag
catgcatgaggtcctgagtttaatctctatatcaggaaaacaaaaacaaa
aacaaaacggaacagaaagaaggcaagatgtatgtttttaaaagcattga
gttctccttggtccctaggaagatctacagacaggctcagccagcagagt
ttgggttttctgcttcctgccttgagtcaaaggcgttagctttgaccaca
gatatccctggttcagccagcagaggagttagccaacggaagagagcgat
gatcccaagctaccattcctggaagaggcccagtttgttctcacttgccg
gtttctgtattccttccaggtgctcttgaatttaaactactgtttattat
tttctgtggattctctttgtggaaagatttagcattttgcattcctttgg
aggagaaatgaaaacttcactggcatctttggggattttacaatcaggga
gtagaaaattgtatttcaaagctgaagctaatgagatcatcctgtaatgg
atgggatgttaaggctctgtgtctgtggaagagacaggcaatttgcctgc
tgctgttctctgtcaccaggaaaatttcgactttacaatctgacaggaaa
gtttgctgcctagaacaatatcatatccgaagtcaaagcagctgttaccc
accacagatgacatgcatctgagttcaacaaaggtccccctcttttcaga
tattaggtccattggttctttgaaatagctttcgtagggttcctgttgca
tagttccagttgcaagtcgcacagcatctcagtattgtaacacacccaag
ctaccaaggccattaatct

gaattctctgtattcattttgccaatgctttgtagcagtggttggtaaga
gagttttccattgttcttttgagagaattgagtacatttttgcctccaga
ttttttttcatttgtaattgttaatgagtttattgaaagttcatttgtct
ccgttttcgtccctgttattctgtgacttctgaagcatgccacttcctac
cactgccacttgctacccattcagacttgcctgaatgtcctttttccttt
tctttaaaaaaattattgcaattaagactctcaaaactgtctctatttct
taatactgttgtgaggatttctgcatcagactgggaaaggcatagagaaa
gagcaccataatttaatagaataaatccatatatctctgtagaaacaaag
caaaagacaacaaatgtttatagtgctttggtcaagaagtcacactagaa
atgaactggaggccataaattcctttgtttaggtaagattgacaatagtg
aagtaggtttaaccaagaacattctgaaaacccaaaatgctattccacaa
gtctccagggttttctgtgttatctatggggttcattgatttaaagtaaa
aacatttggccagaaacttaaatatatatttgaatacatatatacataca
catatatacacatatattatatatgtatatattatatatatgtgtgtatg
tatatttgaagataaaatctccagaaaagctctttagcttggggtttgga
atccttctggccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_87030410_87031582
seq2: B6Ng01-301N11.b_50_1218

seq1  GAATTCAATAATCTGTTCATTTGCTAGAGTCTCTCCCTGAGACTCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATCTGTTCATTTGCTAGAGTCTCTCCCTGAGACTCCACTG  50

seq1  ATGGTTGATTTAATCAGAGCAGCCAGACCAGTGCAAGGGCATTTCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGATTTAATCAGAGCAGCCAGACCAGTGCAAGGGCATTTCTTGTG  100

seq1  TTTGCTTAAATGCCCTGATGCCAAAACACATTATCAAGATGGAAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAAATGCCCTGATGCCAAAACACATTATCAAGATGGAAGGTCTT  150

seq1  TATTCCATTGGTGACAATGGCCATGGTTAACAGTACCCTCTTGGCATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTGGTGACAATGGCCATGGTTAACAGTACCCTCTTGGCATATG  200

seq1  ACAGGAAAAGAACTAGGGCATATGGTTCATAACCCTTGTTTGGCCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAGAACTAGGGCATATGGTTCATAACCCTTGTTTGGCCTTCAG  250

seq1  CTGAAGCCTCTCAATTGTCATCTTCTATAGGAGATTCTTGCATTCCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTCTCAATTGTCATCTTCTATAGGAGATTCTTGCATTCCAGGA  300

seq1  AGTGGGTCAGAGGGCTGCAGAGATTGCTCAGTGATAGAGTGTTTCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCAGAGGGCTGCAGAGATTGCTCAGTGATAGAGTGTTTCTCCAG  350

seq1  CATGCATGAGGTCCTGAGTTTAATCTCTATATCAGGAAAACAAAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGAGGTCCTGAGTTTAATCTCTATATCAGGAAAACAAAAACAAA  400

seq1  AACAAAACGGAACAGAAAGAAGGCAAGATGTATGTTTTTAAAAGCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACGGAACAGAAAGAAGGCAAGATGTATGTTTTTAAAAGCATTGA  450

seq1  GTTCTCCTTGGTCCCTAGGAAGATCTACAGACAGGCTCAGCCAGCAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTTGGTCCCTAGGAAGATCTACAGACAGGCTCAGCCAGCAGAGT  500

seq1  TTGGGTTTTCTGCTTCCTGCCTTGAGTCAAAGGCGTTAGCTTTGACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTCTGCTTCCTGCCTTGAGTCAAAGGCGTTAGCTTTGACCACA  550

seq1  GATATCCCTGGTTCAGCCAGCAGAGGAGTTAGCCAACGGAAGAGAGCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCCTGGTTCAGCCAGCAGAGGAGTTAGCCAACGGAAGAGAGCGAT  600

seq1  GATCCCAAGCTACCATTCCTGGAAGAGGCCCAGTTTGTTCTCACTTGCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAAGCTACCATTCCTGGAAGAGGCCCAGTTTGTTCTCACTTGCCG  650

seq1  GTTTCTGTATTCCTTCCAGGTGCTCTTGAATTTAAACTACTGTTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTATTCCTTCCAGGTGCTCTTGAATTTAAACTACTGTTTATTAT  700

seq1  TTTCTGTGGATTCTCTTTGTGGAAAGATTTAGCATTTTGCATTCCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGATTCTCTTTGTGGAAAGATTTAGCATTTTGCATTCCTTTGG  750

seq1  AGGAGAAATGAAAACTTCACTGGCATCTTTGGGGATTTTACAATCAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATGAAAACTTCACTGGCATCTTTGGGGATTTTACAATCAGGGA  800

seq1  GTAGAAAATTGTATTTCAAAGCTGAAGCTAATGAGATCATCCTGTAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATTGTATTTCAAAGCTGAAGCTAATGAGATCATCCTGTAATGG  850

seq1  ATGGGATGTTAAGGCTCTGTGTCTGTGGAAGAGACAGGCAATTTGCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGTTAAGGCTCTGTGTCTGTGGAAGAGACAGGCAATTTGCCTGC  900

seq1  TGCTGTTCTCTGTCACCAGGAAAATTTCGACTTTACAATCTGACAAGGAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTGTTCTCTGTCACCAGGAAAATTTCGACTTTACAATCTGAC-AGGAA  949

seq1  AGTTTGCTGCCTAGAAC-ATATCATATCCGAAGTCAAAAGCAGCTGTTAC  999
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  AGTTTGCTGCCTAGAACAATATCATATCCGAAGTC-AAAGCAGCTGTTAC  998

seq1  CCA-CACAGATGACATGCATCTGAGTTTCACAAAG--TCCCCTCTTTTCA  1046
      ||| |||||||||||||||||||||||  ||||||   ||||||||||||
seq2  CCACCACAGATGACATGCATCTGAGTTCAACAAAGGTCCCCCTCTTTTCA  1048

seq1  GGATAATAAGTCCATTGTTTCTTTAAAATAGCTTTCGGTAGGGTTTCCCT  1096
       |||| || |||||||| |||||| ||||||||||| ||||||||  |||
seq2  -GATATTAGGTCCATTGGTTCTTTGAAATAGCTTTC-GTAGGGTT--CCT  1094

seq1  G-TGCATAAATTTCAGGTTGCAAGTCGCAACAGCATCTTCAGTATTGT-A  1144
      | |||||  | |||  |||||||||||| |||||||| |||||||||| |
seq2  GTTGCAT--AGTTCCAGTTGCAAGTCGC-ACAGCATC-TCAGTATTGTAA  1140

seq1  CACACCAAAAGCTACCAA-GCCATAAATCT  1173
      ||||||  |||||||||| ||||| |||||
seq2  CACACC-CAAGCTACCAAGGCCATTAATCT  1169


seq1: chr14_87187372_87188134
seq2: B6Ng01-301N11.g_67_832 (reverse)

seq1  TAGTGGCCAGAAGGATTCCAAACCCC-AGCT-AAGAGCATTTCTGGAGAT  48
      |||||||||||||||||||||||||| |||| |||||| |||||||||||
seq2  TAGTGGCCAGAAGGATTCCAAACCCCAAGCTAAAGAGCTTTTCTGGAGAT  50

seq1  TATATATT-AAATATACATACACACATATATATAATATATACATATATAA  97
      | ||| || |||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCAAATATACATACACACATATATATAATATATACATATATAA  100

seq1  TATATGTGTATATATGTGTATGTATATATGTATTCAAATATATATTTAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTATATATGTGTATGTATATATGTATTCAAATATATATTTAAG  150

seq1  TTTCTGGCCAAATGTTTTTACTTTAAATCAATGAACCCCATAGATAACAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCCAAATGTTTTTACTTTAAATCAATGAACCCCATAGATAACAC  200

seq1  AGAAAACCCTGGAGACTTGTGGAATAGCATTTTGGGTTTTCAGAATGTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTGGAGACTTGTGGAATAGCATTTTGGGTTTTCAGAATGTTC  250

seq1  TTGGTTAAACCTACTTCACTATTGTCAATCTTACCTAAACAAAGGAATTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAACCTACTTCACTATTGTCAATCTTACCTAAACAAAGGAATTT  300

seq1  ATGGCCTCCAGTTCATTTCTAGTGTGACTTCTTGACCAAAGCACTATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCCAGTTCATTTCTAGTGTGACTTCTTGACCAAAGCACTATAAA  350

seq1  CATTTGTTGTCTTTTGCTTTGTTTCTACAGAGATATATGGATTTATTCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGTCTTTTGCTTTGTTTCTACAGAGATATATGGATTTATTCTA  400

seq1  TTAAATTATGGTGCTCTTTCTCTATGCCTTTCCCAGTCTGATGCAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGGTGCTCTTTCTCTATGCCTTTCCCAGTCTGATGCAGAAAT  450

seq1  CCTCACAACAGTATTAAGAAATAGAGACAGTTTTGAGAGTCTTAATTGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAACAGTATTAAGAAATAGAGACAGTTTTGAGAGTCTTAATTGCA  500

seq1  ATAATTTTTTTAAAGAAAAGGAAAAAGGACATTCAGGCAAGTCTGAATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTTAAAGAAAAGGAAAAAGGACATTCAGGCAAGTCTGAATGG  550

seq1  GTAGCAAGTGGCAGTGGTAGGAAGTGGCATGCTTCAGAAGTCACAGAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGTGGCAGTGGTAGGAAGTGGCATGCTTCAGAAGTCACAGAATA  600

seq1  ACAGGGACGAAAACGGAGACAAATGAACTTTCAATAAACTCATTAACAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACGAAAACGGAGACAAATGAACTTTCAATAAACTCATTAACAAT  650

seq1  TACAAATGAAAAAAAATCTGGAGGCAAAAATGTACTCAATTCTCTCAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGAAAAAAAATCTGGAGGCAAAAATGTACTCAATTCTCTCAAAA  700

seq1  GAACAATGGAAAACTCTCTTACCAACCACTGCTACAAAGCATTGGCAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGAAAACTCTCTTACCAACCACTGCTACAAAGCATTGGCAAAA  750

seq1  TGAATACAGAGAATTC  763
      ||||||||||||||||
seq2  TGAATACAGAGAATTC  766


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