BAC Information

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BAC

Clone NameB6Ng01-303F15
Chromosome3 (Build37)14 (Build37)
Map Location 124,941,050 - 124,941,55661,078,337 - 61,078,413
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303F15.bB6Ng01-303F15.g
ACCGA097173GA097174
length1,001575
definitionB6Ng01-303F15.b B6Ng01-303F15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,941,050 - 124,941,556)(61,078,337 - 61,078,413)
sequence
gaattcagagaaagtttttccaagcagagcagtgcagtaagaagtcaaga
gaagccagtttgaatcattaaacttagaagatgaaatacattgtagggaa
gctagaagcttccaggaaaaggtctagagatagaacacagtcagaaacac
tctggactcattctaagctgtatatttgcacaaactggatatggctctat
tctcattccataatctgatgaaatgaaaatgtcaaagaagaagtaaaaca
atagaatgtcctaagaagaaacctctttaagtcagagtgtttataaaaag
ctgagacaactgaatgatataaggaaatacaaaagatttatttacaatag
tataatgatgttaaaaatggaagatatgctacaatactattcatgggatt
tgaaataaatacagtcaaggaaaacgccaaattaattgaccttggaaaca
ttaaaaaaaactcattgaattgtggttcaaaataaagattgtacagtgaa
actggcctagtggtatggtggtacatctttggatatatgccaatagaggt
atagctgactctagaggtagaactattcccaattttctgagaaaccacca
aattgattttcaaagtggttgaacaagttttcattcccaccagcaatgaa
agtgagttactctacatcctcatctgcatttgctgtcatttgtttgtttt
gatcttagccattctgacaggtataagatggaatctcagaatccttttga
tttacattttcctgatgactaaggacattgaaggcttcttaaagtatttc
tcagccagtattgattcctctgttgttaattcactgtaccccatttttaa
ttgcataattggtttgttgctgtctaatttcctgtgttctttatatactt
tggatgttagtcctctgttggatgaagtgttggtgagatcgtttcccagt
agactaccattttgtcctattgatgttgttcttgtctcacaaactttttc
a

gaattcctgatttgactcaaatacatttaggaagagaattttaagagatt
gttttgttgttttcctagaaagatgtaataaagttagaattaagaatgaa
atgtgtccactcctcatacaggctgcataataagaaataatacaggcttt
tataaactacactaaaaagagaaatgtactttggacaattttgtgatcaa
gaaaaaacactaattctaggtcagattcaaggatggatccacaggtgtgt
acactatgataaagcaataccaaaactgttgctttggacttaaaattatc
ttatagaataaaacacttcttttaacgtattatcaatagccttctataat
tctctctttttgcatcattttatctatgaggtaattttctaagaactttt
gcctatagaaaggtcacagaaagaaataaagtggtggcatgggaggctct
gtaccatccatccattcttccactcatccatctatccaaatgtacctatg
tatatttggggctcagctccatccactaaagcatatacatatgtgatata
catatgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124941050_124941556
seq2: B6Ng01-303F15.b_44_547

seq1  GAATTCAGAGAAAGTTTTTCCAAGCAGAGCAGTGCAGTAAGAAGTCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAAGTTTTTCCAAGCAGAGCAGTGCAGTAAGAAGTCAAGA  50

seq1  GAAGCCAGTTTGAATCATTAAACTTAGAAGATGAAATACATTGTAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTTTGAATCATTAAACTTAGAAGATGAAATACATTGTAGGGAA  100

seq1  GCTAGAAGCTTCCAGGAAAAGGTCTAGAGATAGAACACAGTCAGAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGCTTCCAGGAAAAGGTCTAGAGATAGAACACAGTCAGAAACAC  150

seq1  TCTGGACTCATTCTAAGCTGTATATTTGCACAAACTGGATATGGCTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCATTCTAAGCTGTATATTTGCACAAACTGGATATGGCTCTAT  200

seq1  TCTCATTCCATAATCTGATGAAATAAAAATGTCAAAGAAGAAGTAAAACA  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCATTCCATAATCTGATGAAATGAAAATGTCAAAGAAGAAGTAAAACA  250

seq1  ATAGAATGTCCTAAGAAGAAACCTCTTTAAGTCAGAGTGTTTATAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTCCTAAGAAGAAACCTCTTTAAGTCAGAGTGTTTATAAAAAG  300

seq1  CTGAGACAACTGAATGATATAAGGAAATACAAAAGATTTATTTACAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAACTGAATGATATAAGGAAATACAAAAGATTTATTTACAATAG  350

seq1  TATAATGATGTTAAAGATGGAAGATATGCTACAATACTATTCATGGGATT  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATAATGATGTTAAAAATGGAAGATATGCTACAATACTATTCATGGGATT  400

seq1  TGAAATAAATACAGTCAAGGAAAACGCCAAATTAATTGACCTTGGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAATACAGTCAAGGAAAACGCCAAATTAATTGACCTTGGAAACA  450

seq1  TTTAAAAAAAAAACTCATTGAATTGTGGTTCAAAATAAAGATTGTACAGT  500
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  TT---AAAAAAAACTCATTGAATTGTGGTTCAAAATAAAGATTGTACAGT  497

seq1  GAAACTG  507
      |||||||
seq2  GAAACTG  504


seq1: chr14_61078337_61078413
seq2: B6Ng01-303F15.g_559_637 (reverse)

seq1  ACACACACACACACACACACATATATATATATATACATACATATACATAT  50
      |||||||||||||||||||||||| |||||        ||||||  ||||
seq2  ACACACACACACACACACACATATGTATAT-------CACATATGTATAT  43

seq1  ACATATGTATATGTA---------TATATATACATA  77
       | |  ||  ||| |          | |||||||||
seq2  GCTTTAGTGGATGGAGCTGAGCCCCAAATATACATA  79


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