BAC Information

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BAC

Clone NameB6Ng01-306P11
Chromosome14 (Build37)
Map Location 42,538,526 - 42,622,896
singlet/doubletdoublet
Overlap geneLOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214
Downstream geneLOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306P11.bB6Ng01-306P11.g
ACCGA099864GA099865
length1,1841,109
definitionB6Ng01-306P11.b B6Ng01-306P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,621,746 - 42,622,896)(42,538,526 - 42,539,427)
sequence
gaattcaggctatgtcctggactaccatcatgcagtggctaccacagtct
gcctcctatatactgagaccttctggtgcttattaaactcagtatcctga
tgccagtacaacacaggttggggttccttactaagggatcaagggcttca
agacctacctcatgggcctggaaggaaacccttctaaaaagttcccagga
agtctgtgccacagggtctcgcccacctcaaacctgttaccacttttttt
aaaaaatatatcttcagggggctggtgagatggctcattgggtaagagaa
cccgactgctcttctgaaagtccagagttcaaatcccagcaaccacatgg
tggctcacaaccatctttaacaagatctgacgccctcttctggagtgtct
gaagacagctacagtatacttacatataataaataaataaatctttaaaa
atatatatttatcttcagaacacagattttcagttgtaggttcttattgc
tacacagcttcccagagcaaaataatcagtatttgcagggaggaaactca
atatcaggatggctatatataatcttcgcgggatttcaatgtgccaccaa
ggtgaacatatagacaaacagcagtgctgactaaggtgggtttccctgtg
catggagacagcatcaccttgcaacaggccccactgtagactccagattc
caaggattcatagacccatgggggacacaagcacatacacacacacagac
atacagacacacagagacacacacacaggcacacacatacaattggtact
ctatgaggagtccatgtctgtaggcttttgctacactgcatcctttgttg
tatttctttaaagtccatggatgtctgatagcaaatatcaagaaaagaat
aatacccctggacatatttcaagttcctgagacattttactacttttcat
cttaagaacacaggccaatcacagctttggttgggtgcttaagcactagg
gaatccagggacttactttgcatcacatcagatactggcctgaacattgg
cccttccaaagcaccagcattggctgggcctagcctttattgccatccag
aagccagtaaggaacttgcagtatgtgcttgagttactgactagctcaac
aggggcttgggaaacgattctatcttggagaaca
gaattccacgggcctatgtttaggagtctggggacagggacccacaaaat
cctggacatctagacagtgctgggttgcagagagttcacagcaggtttga
ctctgctggcctgaaaggataactgggcaaggggttctcagaatcttgga
catgcaggcactgctagaagtctcagaggagctgagcatggaggaggcca
gcaggctaagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctccatgtaacccacagt
tggtttgatgagagagacagtccttggttgtaaactgtttattgattgat
tttcatggaaatgaaagcataacatgtcttaaggttagactagaagttaa
gtaacttctgaggaaggaatatccaggaagggaagcttattgactgaacc
ctaccatcttctattacctcattagcagggagaaccctattctgttctaa
ataaccaaccacaggccatgttcctatgtagagattttggtcccatgaaa
gaggcctggtaggaagcaggtgacacttttgccatctactgtgggtctgg
gacttccaacccactcaactttaccaaattctggacatggtagtctactg
tcccaggtgttaatctgagatttattgatgtgaggagacaccaggacata
tgtttagtatgcggatctcaatgcctaccctccacactgacacactgttt
ctaacaaggccacaactcctaaaagtaccactcccatattcaagccacca
cactcctctgcaatctcccaagacatttacctcactctgtcctactgttt
tactcttttctccttcacaaattatgtgttctaatattttcttgaaatat
cctcctataaccaacactagtgcattaacttctatggatactgcagttaa
atgcacatctctagacattcatgtaccatcacatagaacacatgatggtg
gtatttgtctttttggggtctggtaatatcaccttcaaaatattatccat
gtgttccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42621746_42622896
seq2: B6Ng01-306P11.b_50_1233 (reverse)

seq1  TGTTCT-CAAGATAGGATATCG-TTCCCAA-CCCCTGT--GGCTAGTCAG  45
      |||||| ||||||||   |||| ||||||| |||||||   |||||||| 
seq2  TGTTCTCCAAGATAG--AATCGTTTCCCAAGCCCCTGTTGAGCTAGTCA-  47

seq1  GTACCTC-AGCACATACTGC-AGT--CCTACTGGC-TCTGGATGGC-ATA  89
      ||| ||| |||||||||||| |||  | ||||||| |||||||||| |||
seq2  GTAACTCAAGCACATACTGCAAGTTCCTTACTGGCTTCTGGATGGCAATA  97

seq1  A--GCTAG--CCAGCC-ATGCT-GTGC-TTGGA--GGGCAATG-TCA-GC  128
      |  |||||  |||||| ||||| |||| |||||  || ||||| ||| ||
seq2  AAGGCTAGGCCCAGCCAATGCTGGTGCTTTGGAAGGGCCAATGTTCAGGC  147

seq1  CAGTATCTGATGTGATGC-AAGTAAGT-CCTGGATTCCCTAGTGCTT-AG  175
      |||||||||||||||||| |||||||| ||||||||||||||||||| ||
seq2  CAGTATCTGATGTGATGCAAAGTAAGTCCCTGGATTCCCTAGTGCTTAAG  197

seq1  CACC--ACC-AAGCTGTGATT-GCCTGTGT--CTAAGATG-AAAGTAGT-  217
      ||||  ||| ||||||||||| ||||||||   ||||||| |||||||| 
seq2  CACCCAACCAAAGCTGTGATTGGCCTGTGTTCTTAAGATGAAAAGTAGTA  247

seq1  AAATGTCTCA-GAACTTGAAATATGTCCAGGGGTA-TATTCTTTTCTTGA  265
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AAATGTCTCAGGAACTTGAAATATGTCCAGGGGTATTATTCTTTTCTTGA  297

seq1  TATTTGCTATCAGACATCCATGGACCTTAAAGAAATAC-ACCAAGGATGC  314
      ||||||||||||||||||||||||| |||||||||||| || ||||||||
seq2  TATTTGCTATCAGACATCCATGGACTTTAAAGAAATACAACAAAGGATGC  347

seq1  AGTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGTACCAATTGTA  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGTACCAATTGTA  397

seq1  TGTGTGTGCCTGTGTGTGTGTCTCTGTGTGTCTGTATGTCTGTGTGTGTG  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCCTGTGTGTGTGTCTCTGTGTGTCTGTATGTCTGTGTGTGTG  447

seq1  TATGTGCTTGTGTCCCCCATGGGTCTATGAATCCTTGGAATCTGGAGTCT  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGTGTCCCCCATGGGTCTATGAATCCTTGGAATCTGGAGTCT  497

seq1  ACAGTGGGGCCTGTTGCAAGGTGATGCTGTCTCCATGCACAGGGAAACCC  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGGCCTGTTGCAAGGTGATGCTGTCTCCATGCACAGGGAAACCC  547

seq1  ACCTTAGTCAGCACTGCTGTTTGTCTATATGTTCACCTTGGTGGCACATT  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTCAGCACTGCTGTTTGTCTATATGTTCACCTTGGTGGCACATT  597

seq1  GAAATCCCGCGAAGATTATATATAGCCATCCTGATATTGAGTTTCCTCCC  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCGCGAAGATTATATATAGCCATCCTGATATTGAGTTTCCTCCC  647

seq1  TGCAAATACTGATTATTTTGCTCTGGGAAGCTGTGTAGCAATAAGAACCT  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATACTGATTATTTTGCTCTGGGAAGCTGTGTAGCAATAAGAACCT  697

seq1  ACAACTGAAAATCTGTGTTCTGAAGATAAATATATATTTTTAAAGATTTA  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAAAATCTGTGTTCTGAAGATAAATATATATTTTTAAAGATTTA  747

seq1  TTTATTTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACTCCAGAA  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACTCCAGAA  797

seq1  GAGGGCGTCAGATCTTGTTAAAGATGGTTGTGAGCCACCATGTGGTTGCT  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGTCAGATCTTGTTAAAGATGGTTGTGAGCCACCATGTGGTTGCT  847

seq1  GGGATTTGAACTCTGGACTTTCAGAAGAGCAGTCGGGTTCTCTTACCCAA  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAACTCTGGACTTTCAGAAGAGCAGTCGGGTTCTCTTACCCAA  897

seq1  TGAGCCATCTCACCAGCCCCCTGAAGATATATTTTTTAAAAAAAGTGGTA  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCACCAGCCCCCTGAAGATATATTTTTTAAAAAAAGTGGTA  947

seq1  ACAGGTTTGAGGTGGGCGAGACCCTGTGGCACAGACTTCCTGGGAACTTT  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTGAGGTGGGCGAGACCCTGTGGCACAGACTTCCTGGGAACTTT  997

seq1  TTAGAAGGGTTTCCTTCCAGGCCCATGAGGTAGGTCTTGAAGCCCTTGAT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGTTTCCTTCCAGGCCCATGAGGTAGGTCTTGAAGCCCTTGAT  1047

seq1  CCCTTAGTAAGGAACCCCAACCTGTGTTGTACTGGCATCAGGATACTGAG  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGTAAGGAACCCCAACCTGTGTTGTACTGGCATCAGGATACTGAG  1097

seq1  TTTAATAAGCACCAGAAGGTCTCAGTATATAGGAGGCAGACTGTGGTAGC  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAGCACCAGAAGGTCTCAGTATATAGGAGGCAGACTGTGGTAGC  1147

seq1  CACTGCATGATGGTAGTCCAGGACATAGCCTGAATTC  1151
      |||||||||||||||||||||||||||||||||||||
seq2  CACTGCATGATGGTAGTCCAGGACATAGCCTGAATTC  1184

seq1: chr14_42538526_42539427
seq2: B6Ng01-306P11.g_276_1176

seq1  AGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAGCTCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAGCTCAGAGG  50

seq1  TGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTTAGATGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTTAGATGGCA  100

seq1  AGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGTTGGTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGTTGGTTTGA  150

seq1  TGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGATTTTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGATTTTCATGG  200

seq1  AAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAAGTAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAAGTAACTTC  250

seq1  TGAGGAAGGAATATCCAGGAAGGGAAGCTTATTGACTGAACCCTACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGGAATATCCAGGAAGGGAAGCTTATTGACTGAACCCTACCATC  300

seq1  TTCTATTACCTCATTAGCAGGGAGAACCCTATTCTGTTCTAAATAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACCTCATTAGCAGGGAGAACCCTATTCTGTTCTAAATAACCAA  350

seq1  CCACAGGCCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCCATGTTCCTATGTAGAGATTTTGGTCCCATGAAAGAGGCCTG  400

seq1  GTAGGAAGCAGGTGACACTTTTGCCATCTACTGTGGGTCTGGGACTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGCAGGTGACACTTTTGCCATCTACTGTGGGTCTGGGACTTCCA  450

seq1  ACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCCAGGT  500

seq1  GTTAATCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTTTAGT  550

seq1  ATGCGGATCTCAATGCCTACCCTCCACACTGACACACTGTTTCTAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGATCTCAATGCCTACCCTCCACACTGACACACTGTTTCTAACAAG  600

seq1  GCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACACTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACACTCCTC  650

seq1  TGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTACTC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTACTCTTT  700

seq1  TCTCCTTCACAAATTATGTGTTCTAATATTTTCTTGAAATATCCTCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCACAAATTATGTGTTCTAATATTTTCTTGAAATATCCTCCTAT  750

seq1  AACCCAACACTAGTGCATTAACTTCTATGGATACTGCAGTTTAAATGCAC  799
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AA-CCAACACTAGTGCATTAACTTCTATGGATACTGCAG-TTAAATGCAC  798

seq1  ATCTCTAGACATTCAATGTTACCATCCACATAAGACACATGAT-GTGGTA  848
      |||||||||||||| ||| |||||| ||||||  ||||||||| ||||||
seq2  ATCTCTAGACATTC-ATG-TACCAT-CACATAGAACACATGATGGTGGTA  845

seq1  TTTGTCTTTTT-GGGTCTGGGTTATATCA-CTCAAAAATATTATTCATGT  896
      ||||||||||| |||||| ||| |||||| ||  |||||||||| |||||
seq2  TTTGTCTTTTTGGGGTCT-GGTAATATCACCTTCAAAATATTATCCATGT  894

seq1  G-TCCAT  902
      | |||||
seq2  GTTCCAT  901