BAC Information

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BAC

Clone NameB6Ng01-308D21
Chromosome14 (Build37)
Map Location 117,453,226 - 117,454,377
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308D21.bB6Ng01-308D21.g
ACCGA100795GA100796
length6541,145
definitionB6Ng01-308D21.b B6Ng01-308D21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccttctctgaattgacccgaattgtattcaactgaactctcca
aactgaagtgaagtggtaaccttcccaaactgagttccactctgctgtcc
tcattgtactgactccggactgacggatgctccctgcactgttctcaaat
agtgtctctgccctgtgctgttctcctgagagttgcactaattctatctc
tgacacattctgccaaatctttctctgattcataactttgtctgcccctt
aattagatgtcaacttcaaacatggctgcttccttctacaaactcatttt
accttaacggcgtgtactgaggatgtgtctgtgttcgagccagagagatt
acatggatgccgttccattaaggaagcatgagctggacctacacatatgt
agcagacacatatgtagcagaagtacatcctgcttttcctgtgggttccc
agctactggagcaggggctgtccctgaatctgctatctgccaatggatct
ggtttccccaactgcaccattctgtctggcctcagctgcagaggatgtgt
ctagtcctgcagtgactttatgacccagaaagagtcctgggggtgagcat
gaagagaaggggagagtagaatcaggctaggatttgtgtgtgggggggtg
atat

gaattctaagacagctactctcggaagccactgctagatatgaaactcag
ttttctgtcctggtgacttcaaatcagagggaggtaaaggagacattcca
cagaacatgacaaaggattctcacagaaattgtttcaaactgttacctga
gttccaaaacttgggctaggagacagatcaataggtagaatttattgcca
tatttaaaaaacgaacaaagtgtgaatcccaagcatccaaataaaagcag
aacatggtcccatgcccaggagttgggtggaagagacaggcagtttacat
gaactcaatgtctaggtagcttagcctacatgataaaccttgggctcagt
gtcagtgaaccactagaggaagactgtcagaatcatcctctagtctccag
acgtctaagtaaaggaatgtgcacacacacacacagacacacacacacac
acacacacacacacacacacacactcactcactcattcacttgggcttat
gtactacacatccacatcgatgcccaaaagcaatcaagaagagctgccat
taaaaatagagacaaaagactgggggtggtggtgcacacctttaatccca
gcactcaggaggcagaggcaggcagatttctgagtttgaggccagcctgg
tctacagagtgagttccaggtcagccagggctatacagagaaaccctgtc
tcagaaaaacaaaacaaaaaacaaacaaacaaaaagttcctgagaaacag
ccttctcagaatgtgctgacaaaactttcttcggtaggtctcaaggttta
aaacagtgcagattagcacgaaatgacatggtaacatagttgttgatgta
caagattccaagaaccctctctgttgaaagggcaggcaaagacagcgggt
ttgtttgtttttgttttttgtttttgtttttgacattgaaacaattttca
gttcaaacatatagattttttgaccttcatccctaaaagagcatacctaa
aagaagcatacctcagtatgggcttcccgatagatgatgtgaacttgaca
ttagaaatgctgtttatgtgtatggattaaggtagccgccacaacactta
tgcaacaatttgaagtaatggctgaaaggtctcacttccaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117453226_117454377
seq2: B6Ng01-308D21.g_66_1210 (reverse)

seq1  TTAATTTGAAGTGAGACCTTTTCAGCAATTTTACATCAATGTTGTTGCAT  50
      |||||| ||||||||||| ||||||| |  |||| ||||  |||||||||
seq2  TTAATTGGAAGTGAGACC-TTTCAGCCA--TTACTTCAA-ATTGTTGCAT  46

seq1  AAGTGTTGTGGCGGCTACTTTAAATCCATACACATAAAACAGCATTTCTA  100
      |||||||||||||||||| || ||||||||||||| ||||||||||||||
seq2  AAGTGTTGTGGCGGCTACCTT-AATCCATACACAT-AAACAGCATTTCTA  94

seq1  ATGTCAAGTTCACATCAATCTATCGGGAAG-CCATACCTGAGGTATGGCT  149
      |||||||||||||||| ||||||||||||| ||||| ||||||||| |||
seq2  ATGTCAAGTTCACATC-ATCTATCGGGAAGCCCATA-CTGAGGTAT-GCT  141

seq1  TCTTTTAGGTTATGCTCTTTTAGGGATGAAGGTC-AAAAATCTATATGTT  198
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TCTTTTAGG-TATGCTCTTTTAGGGATGAAGGTCAAAAAATCTATATGTT  190

seq1  TGAACTGAAAATTGTTTCAATGTCAAAAACAAAAACAAAAAACAAAAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAAAATTGTTTCAATGTCAAAAACAAAAACAAAAAACAAAAACA  240

seq1  AACAAA-CCGCTGTCTTTGCCTGCCCTTTCAACAGAGAGGGTTCTTGGAA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCCGCTGTCTTTGCCTGCCCTTTCAACAGAGAGGGTTCTTGGAA  290

seq1  TCTTGTACATCAACAACTATGTTACCATGTCATTTCGTGCTAATCTGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACATCAACAACTATGTTACCATGTCATTTCGTGCTAATCTGCAC  340

seq1  TGTTTTAAACCTTGAGACCTACCGAAGAAAGTTTTGTCAGCACATTCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAACCTTGAGACCTACCGAAGAAAGTTTTGTCAGCACATTCTGA  390

seq1  GAAGGCTGTTTCTCAGGAACTTTTTGTTTGTTTGTTTTTTGTTTTGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGTTTCTCAGGAACTTTTTGTTTGTTTGTTTTTTGTTTTGTTTT  440

seq1  TCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACCTGGAACTCACTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGACCTGGAACTCACTCT  490

seq1  GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCTG  540

seq1  AGTGCTGGGATTAAAGGTGTGCACCACCACCCCCAGTCTTTTGTCTCTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGTGTGCACCACCACCCCCAGTCTTTTGTCTCTAT  590

seq1  TTTTAATGGCAGCTCTTCTTGATTGCTTTTGGGCATCGATGTGGATGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGCAGCTCTTCTTGATTGCTTTTGGGCATCGATGTGGATGTGT  640

seq1  AGTACATAAGCCCAAGTGAATGAGTGAGTGAGTGTGTGTGTGTGTGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAAGCCCAAGTGAATGAGTGAGTGAGTGTGTGTGTGTGTGTGTG  690

seq1  TGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGCACATTCCTTTACTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGCACATTCCTTTACTTA  740

seq1  GACGTCTGGAGACTAGAGGATGATTCTGACAGTCTTCCTCTAGTGGTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCTGGAGACTAGAGGATGATTCTGACAGTCTTCCTCTAGTGGTTCA  790

seq1  CTGACACTGAGCCCAAGGTTTATCATGTAGGCTAAGCTACCTAGACATTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACTGAGCCCAAGGTTTATCATGTAGGCTAAGCTACCTAGACATTG  840

seq1  AGTTCATGTAAACTGCCTGTCTCTTCCACCCAACTCCTGGGCATGGGACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGTAAACTGCCTGTCTCTTCCACCCAACTCCTGGGCATGGGACC  890

seq1  ATGTTCTGCTTTTATTTGGATGCTTGGGATTCACACTTTGTTCGTTTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCTTTTATTTGGATGCTTGGGATTCACACTTTGTTCGTTTTTT  940

seq1  AAATATGGCAATAAATTCTACCTATTGATCTGTCTCCTAGCCCAAGTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGCAATAAATTCTACCTATTGATCTGTCTCCTAGCCCAAGTTTT  990

seq1  GGAACTCAGGTAACAGTTTGAAACAATTTCTGTGAGAATCCTTTGTCATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAGGTAACAGTTTGAAACAATTTCTGTGAGAATCCTTTGTCATG  1040

seq1  TTCTGTGGAATGTCTCCTTTACCTCCCTCTGATTTGAAGTCACCAGGACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGAATGTCTCCTTTACCTCCCTCTGATTTGAAGTCACCAGGACA  1090

seq1  GAAAACTGAGTTTCATATCTAGCAGTGGCTTCCGAGAGTAGCTGTCTTAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGAGTTTCATATCTAGCAGTGGCTTCCGAGAGTAGCTGTCTTAG  1140

seq1  AATTC  1152
      |||||
seq2  AATTC  1145


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