BAC Information

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BAC

Clone NameB6Ng01-308I06
Chromosome14 (Build37)
Map Location 28,162,186 - 28,320,141
singlet/doubletdoublet
Overlap geneArhgef3, Ccdc66
Upstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, LOC100040147
Downstream geneLOC665370, Erc2, LOC100040206, Wnt5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I06.bB6Ng01-308I06.g
ACCGA100998GA100999
length1,1491,112
definitionB6Ng01-308I06.b B6Ng01-308I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,318,978 - 28,320,141)(28,162,186 - 28,163,286)
sequence
gaattcaaagccagcctggtcaaccagcctggtctacatacatagtgagt
ttgagggcagcttgggctatgtgaattaaaagaaacaaccaaccaaaacc
cctgctttgatggtcatgtgattcctgtatacattcaaaggtataggttt
actttcaaggttcatataaatatccctggctgctatttagtgaaagttgt
taaattaaacttgtcaaaacaattttcttttatattgcagagatggttta
aagcttgaaactgaattactggatggaaaaaccaagttaatactgtcccc
atatggtatgctgtgtttttggacgtcgaaaatgtttgtatgtagactat
gtggtagtttaatagatgtttgttttgcttgtatagttaaatgacacttg
gaaaaagcctctttttaatgtctacaaattgatatttatccaagtaaagt
cagattgtgacagtgatcactattgtctatgttggttcataaaatatatt
tcatgtgtaatgtttttggtgttaccataccttgttgcctaataagtaat
acaggtagagttcagataattcttaaagatttatttatttattttatgca
tgtgagtatactgtagctgtacagatggttatgagccttcatgtggttat
tgggaattgaattttaggacctctgctcgctccagtcagccccgctcact
ctggttggtcagttccactcgctcagtccctgcttgctccagcccaaagt
tttattattatacataagtacactgtagctgtcttcagacgcaccagaag
agggcggcagatatcattacgggtggttgtgagccaccatgtggttgctg
ggatttgaactcaggaccttcttaagatcagtcagtgctcttacccactg
agccatctcgtcagccctgagttcagataattatgttgtgtgagaagtta
aatttatatagtacaactacagttgctaagtcttttttaaatcatagttt
tagattcagtacagttttttagtcttctccgtcattactgctgatcacac
acatttgttattgtcttgtcaaagactatttggaattaaagtgacatgga
agtgaaattattggaccaccacattgaaaagtgggaaatctcaggtggg
gaattctagtagaccctaaatgattcattcctttgtattaaagtctgggg
gctagaaagaacacacaatcatggttcaaggttgcaaatgtagagttgag
aaagccagggtctgaggtgagctggaaaaatctcttgttagtgaacattt
aaaaaaaaaaaaaaatcctgtcttaaaaaaaatgtgctgcaccatgagaa
gtggccaagcaaacagcattgtgttctgcgtgagcgtgcacacccatcct
agggaatagcatttggaactatttataaacttacttgaggggtgtgggat
gacagaggaccatagaaatctattgcacgtcaccaccctcacacttaact
gagcagcctactctctaccttatttattcacataccattgctcattgggt
ggcatggtgtcaccccaacatgaaggtttaaattaatacacacacataca
cacacacacacacacacacacacacacacacacaaacacatacacaaaca
cacacacacacacacacacaaacacaaacacatacacaaacacacacaca
cacacacacacacacacacacacacacacacacgtttccagttcactgat
ttttctcatgtcattgtttggttgttttttccacgtagaataaccagatt
tgggtttatcctgttctctcttgggagctgaatgttctaaaatgttctgt
attccctggttggtaaagtgtggggacttgctgctgagggcacacgtggg
ccaggcatctgaagggataaaacgtgccactgggtacagctggcacatgg
cagaaagcatcacacgtattttatgtttctttctggaagtcacgtcccct
gaaaagcttccttgctcaaaaatcattgtcaaagctaagaagtaaaccag
aaaggcaaagagtgtatctgctctctcctgcagcctgggtctcccgcccc
atgacaatgcaggtttatctagcagcccaaatgtgatcctgccttatctt
tcagcccttatcttcagccagactgcagactgttcttgtcagctcagcct
ccggggcggagatgcaatgtcatcatcccagattcagcttaggaacactc
tgtcctaccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28318978_28320141
seq2: B6Ng01-308I06.b_44_1192 (reverse)

seq1  CCCACCTGAGTATTCCCACTTTTTCAATGTGGTGGTTCAA-ATATTCACT  49
      ||||||||||  ||||||| |||||||||||||||| ||| |  ||||||
seq2  CCCACCTGAGATTTCCCAC-TTTTCAATGTGGTGGTCCAATAATTTCACT  49

seq1  CCCATTTCACTTTTATTTC-AATAGTCTTTCCAAGGAAAGACAATAAACA  98
       |||| ||||||| ||| | ||||||||||    |  |||||||| ||||
seq2  TCCATGTCACTTTAATTCCAAATAGTCTTT----GACAAGACAAT-AACA  94

seq1  AATGGTGGTGGTGATCAGGCAAGTAATTGACGGAGAAGACTAAAAAACTG  148
      ||| |||   ||||||||   ||||| |||||||||||||||||||||||
seq2  AAT-GTG--TGTGATCAG--CAGTAA-TGACGGAGAAGACTAAAAAACTG  138

seq1  TACTGAATCTAAAAACTAATGATTTTAAAAAAGACTTTAGCAACTGTAGT  198
      |||||||||| |||||| |||| |||||||||||| ||||||||||||||
seq2  TACTGAATCT-AAAACT-ATGA-TTTAAAAAAGAC-TTAGCAACTGTAGT  184

seq1  TGTACTATATAAATTTAACTTTCTCACACAACATAATTATCTGAACTCAG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTACTATATAAATTTAAC-TTCTCACACAACATAATTATCTGAACTCAG  233

seq1  GGCTGACGAGATGGCTCAGTGGGTAAGAGCACTGACTGATCTTAAGAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACGAGATGGCTCAGTGGGTAAGAGCACTGACTGATCTTAAGAAGG  283

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAA  333

seq1  TGATATCTGCCGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTGCCGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACT  383

seq1  TATGTATAATAATAAAACTTTGGGCTGGAGCAAGCAGGGACTGAGCGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAATAATAAAACTTTGGGCTGGAGCAAGCAGGGACTGAGCGAGT  433

seq1  GGAACTGACCAACCAGAGTGAGCGGGGCTGACTGGAGCGAGCAGAGGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGACCAACCAGAGTGAGCGGGGCTGACTGGAGCGAGCAGAGGTCC  483

seq1  TAAAATTCAATTCCCAATAACCACATGAAGGCTCATAACCATCTGTACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCAATTCCCAATAACCACATGAAGGCTCATAACCATCTGTACAG  533

seq1  CTACAGTATACTCACATGCATAAAATAAATAAATAAATCTTTAAGAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTATACTCACATGCATAAAATAAATAAATAAATCTTTAAGAATTA  583

seq1  TCTGAACTCTACCTGTATTACTTATTAGGCAACAAGGTATGGTAACACCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCTACCTGTATTACTTATTAGGCAACAAGGTATGGTAACACCA  633

seq1  AAAACATTACACATGAAATATATTTTATGAACCAACATAGACAATAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTACACATGAAATATATTTTATGAACCAACATAGACAATAGTGA  683

seq1  TCACTGTCACAATCTGACTTTACTTGGATAAATATCAATTTGTAGACATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCACAATCTGACTTTACTTGGATAAATATCAATTTGTAGACATT  733

seq1  AAAAAGAGGCTTTTTCCAAGTGTCATTTAACTATACAAGCAAAACAAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGCTTTTTCCAAGTGTCATTTAACTATACAAGCAAAACAAACA  783

seq1  TCTATTAAACTACCACATAGTCTACATACAAACATTTTCGACGTCCAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAAACTACCACATAGTCTACATACAAACATTTTCGACGTCCAAAA  833

seq1  ACACAGCATACCATATGGGGACAGTATTAACTTGGTTTTTCCATCCAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATACCATATGGGGACAGTATTAACTTGGTTTTTCCATCCAGTA  883

seq1  ATTCAGTTTCAAGCTTTAAACCATCTCTGCAATATAAAAGAAAATTGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTCAAGCTTTAAACCATCTCTGCAATATAAAAGAAAATTGTTT  933

seq1  TGACAAGTTTAATTTAACAACTTTCACTAAATAGCAGCCAGGGATATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTTTAATTTAACAACTTTCACTAAATAGCAGCCAGGGATATTTA  983

seq1  TATGAACCTTGAAAGTAAACCTATACCTTTGAATGTATACAGGAATCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACCTTGAAAGTAAACCTATACCTTTGAATGTATACAGGAATCACA  1033

seq1  TGACCATCAAAGCAGGGGTTTTGGTTGGTTGTTTCTTTTAATTCACATAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCAAAGCAGGGGTTTTGGTTGGTTGTTTCTTTTAATTCACATAG  1083

seq1  CCCAAGCTGCCCTCAAACTCACTATGTATGTAGACCAGGCTGGTTGACCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTGCCCTCAAACTCACTATGTATGTAGACCAGGCTGGTTGACCA  1133

seq1  GGCTGGCTTTGAATTC  1164
      ||||||||||||||||
seq2  GGCTGGCTTTGAATTC  1149

seq1: chr14_28162186_28163286
seq2: B6Ng01-308I06.g_66_1177

seq1  GAATTCTAGTAGACCCTAAATGATTCATTCCTTTGTATTAAAGTCTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTAGACCCTAAATGATTCATTCCTTTGTATTAAAGTCTGGGG  50

seq1  GCTAGAAAGAACACACAATCATGGTTCAAGGTTGCAAATGTAGAGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGAACACACAATCATGGTTCAAGGTTGCAAATGTAGAGTTGAG  100

seq1  AAAGCCAGGGTCTGAGGTGAGCTGGAAAAATCTCTTGTTAGTGAACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGGTCTGAGGTGAGCTGGAAAAATCTCTTGTTAGTGAACATTT  150

seq1  AAAAAAAAAAAAAAATCCTGTCTTAAAAAAAATGTGCTGCACCATGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAATCCTGTCTTAAAAAAAATGTGCTGCACCATGAGAA  200

seq1  GTGGCCAAGCAAACAGCATTGTGTTCTGCGTGAGCGTGCACACCCATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAAGCAAACAGCATTGTGTTCTGCGTGAGCGTGCACACCCATCCT  250

seq1  AGGGAATAGCATTTGGAACTATTTATAAACTTACTTGAGGGGTGTGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAGCATTTGGAACTATTTATAAACTTACTTGAGGGGTGTGGGAT  300

seq1  GACAGAGGACCATAGAAATCTATTGCACGTCACCACCCTCACACTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGACCATAGAAATCTATTGCACGTCACCACCCTCACACTTAACT  350

seq1  GAGCAGCCTACTCTCTACCTTATTTATTCACATACCATTGCTCATTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTACTCTCTACCTTATTTATTCACATACCATTGCTCATTGGGT  400

seq1  GGCATGGTGTCACCCCAACATGAAGGTTTAAATTAATACACACACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGTCACCCCAACATGAAGGTTTAAATTAATACACACACATACA  450

seq1  CACACACACACACACACACACACACACACACACAAACACATACACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAAACACATACACAAACA  500

seq1  CACACACACACACACACACAAACACAAACACATACACAAACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAAACACAAACACATACACAAACACACACACA  550

seq1  CACACACACACACACACACACACACACACACACGTTTCCAGTTCACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGTTTCCAGTTCACTGAT  600

seq1  TTTTCTCATGTCATTGTTTGGTTGTTTTTTCCACGTAGAATAACCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATGTCATTGTTTGGTTGTTTTTTCCACGTAGAATAACCAGATT  650

seq1  TGGGTTTATCCTGTTCTCTCTTGGGAGCTGAATGTTCTAAAATGTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTATCCTGTTCTCTCTTGGGAGCTGAATGTTCTAAAATGTTCTGT  700

seq1  ATTCCCTGGTTGGTAAAGTGTGGGGACTTGCTGCTGAGGGCACACGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGGTTGGTAAAGTGTGGGGACTTGCTGCTGAGGGCACACGTGGG  750

seq1  CCAGGCATCTGAAGGGATAAAACGTGCCACTGGGTACAGCTGGCACATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATCTGAAGGGATAAAACGTGCCACTGGGTACAGCTGGCACATGG  800

seq1  CAG-AAGCATCACACGTATTTTATGTTTCTTTCTGGAAGTCACGT-CCCT  848
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGAAAGCATCACACGTATTTTATGTTTCTTTCTGGAAGTCACGTCCCCT  850

seq1  GAAAAGCTTCCTTGCTCAAAAATCATTGTCAAAGCTAAGAAGT-AACCAG  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAAGCTTCCTTGCTCAAAAATCATTGTCAAAGCTAAGAAGTAAACCAG  900

seq1  -AAGGCAAAGGAGTGTATCTGCTCTCTCCTGCAGCCTGGGTCTCCCGCCC  946
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAA-GAGTGTATCTGCTCTCTCCTGCAGCCTGGGTCTCCCGCCC  949

seq1  CATGACAATGCAGGTTTTATCTAGCAG-CCAAATGTGATCCCTGCCTTAT  995
      |||||||||||||| |||||||||||| ||||||||||| ||||||||||
seq2  CATGACAATGCAGG-TTTATCTAGCAGCCCAAATGTGAT-CCTGCCTTAT  997

seq1  C-TTCAG-CCTTATCTTCAGCCAGACTGCAGACCTGTC-TGTCAGCTCAG  1042
      | ||||| |||||||||||||||||||||||||   || |||||||||||
seq2  CTTTCAGCCCTTATCTTCAGCCAGACTGCAGACTGTTCTTGTCAGCTCAG  1047

seq1  -CTCCGAG--CGAGATGC-ATGTCATCATCCCAGATTCAGCT--AGAACA  1086
       ||||| |   ||||||| |||||||||||||||||||||||   |||||
seq2  CCTCCGGGGCGGAGATGCAATGTCATCATCCCAGATTCAGCTTAGGAACA  1097

seq1  CTCTGTCCTACCCTT  1101
      |||||||||||||||
seq2  CTCTGTCCTACCCTT  1112