BAC Information

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BAC

Clone NameB6Ng01-308K10
Chromosome14 (Build37)
Map Location 56,239,519 - 56,362,988
singlet/doubletdoublet
Overlap geneRec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1
Upstream gene5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g
Downstream gene2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308K10.bB6Ng01-308K10.g
ACCGA101095GA101096
length1,0951,047
definitionB6Ng01-308K10.b B6Ng01-308K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,361,904 - 56,362,988)(56,239,519 - 56,240,565)
sequence
gaattccaagtgagcagcaagggagtcggaaaggacaaagaggatggtta
cttctgtctgagagtggacgccatgcctcatctcttgcctggaattagca
gaataattacaaagtaaggtcttgcatatggtagccctcagtgaaagcgg
atgttaaatctgaagtccaatgtaccttgctctgttgtgggaggtgccat
tgtggtgaaattcctaaagcggacaccagagggagccattgcatggccat
gtcccagctgttggctgagtcctgagctctcagttcctaaacttcactgg
agttcggaaagtgacactgctgtgaactcatcctcgctgtccctctccag
gcacagtccctcgggggccggtgtgtacccgtggtgtgtgattcaagcca
ggagagtgaagtgaaaagcctgttcgagcaagtagatcgggaacagaaag
ggcggctagatgttctggtcaataatgcctatgctggcgtccaggtaacc
ttttaactcgatccaactctacattccaaatccacccttgagtctttatc
tccattcgtggtcccattagccagccctttataccttcatgccaatcagt
cacccttatgtcttctaggcaatcctgaacaccaccaacaagtctttctg
ggaagtgcctgcctccatttgggatgacataaacaatgttggactcaggt
gtgtgcttcactgccagagcctgggctcctcttgtttagtagccccagag
cctgggccttttcctataaggactttctcctctggcttccccatctcttt
caactccgttctactccatttgtcccacttactcctggagaagtcccatg
cctgtgggtttgcacctaagaatataaccttttttttttcccccacgtgt
gtacgtgagcatgcatatgtgataggggtgttgtaaggtgtggtttctgt
gcctaccttggtgcatgcaagagaatccgaagacaagtccagagaagtca
gttctctttcctcacattcttttctagtgagtttcgggcttgagctggct
ttcccgggcctgcacatgaagcagccttttgctactgaggcacct
gaattcaagagtctcaaggagggctggagagatggctcagtggttaagaa
tactggtggctcttccagaggtcctgagttcaattcccagcaatcacatg
gtgacttacatgcagatagaacactcgtgtatatataaaatcaatagata
aatcttttttaaaaagtctcagggaggagagctgtcaagcaggaaaggac
tggaactatggctcagtggttgtgtgtcctgctcttgcataggacaggac
ttcaccaccagccttcagccacctataactccagctctggggatccaaca
tctattgccctcttctgacctccaagggtgcatacaaacatacataaagt
attttaaaacaatttttaggccaacctgggctacacaataagacctgtct
caaaaacaaataaatagaagaagaaagctaaaattccaagataaaaaata
gagatactgccagataggtgtccagtgtgcacctagtgtgtgaagagagg
atacagaggactaaagatgagacctatcttttcttcccaatttcttccca
aagattcgacaccttttagaggctgcaaccccggaaaaaactcgtaagga
gacccttcctgaagccactccagaccccaggaagcctggttagcagagag
aatcttgctgtaaaagggtgcagaatccccaagggctgaaaaataccact
ttaaaaaaaaaaaaaaaaagccaggcccagttggccccagtgatccacac
ctgtaaccccatctcctagaggagctgagatgggaaaactccaagtacaa
cacatgcctggcttaagtactgagttcaaagccagctaagaccggttaag
gagatcatttaaacatttactttaaaaagggggaggggggggcgctggag
agatggctcagtggttaagagcactgactgctcttccaaaggtcctgagt
tcaaatccagctaactacatgggtggcttcacaaccacccataatgaaga
tctaatgcccctctggtgctctgaaggtcagtacatgtacttaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56361904_56362988
seq2: B6Ng01-308K10.b_50_1144 (reverse)

seq1  AGGTGGCTCAGTAGGCAAAGGCTGCTTCCTGTGCAGG-CCGGGAAAGCCA  49
      ||||| ||||||||  |||||||||||| |||||||| ||||||||||| 
seq2  AGGTGCCTCAGTAGCAAAAGGCTGCTTCATGTGCAGGCCCGGGAAAGCC-  49

seq1  AGCTCAAGCCCGAAACTCAC-AGAAA--GATGTGGAGAAAGAGAACTGAC  96
      |||||||||||||||||||| |||||   |||||  ||||||||||||||
seq2  AGCTCAAGCCCGAAACTCACTAGAAAAGAATGTGAGGAAAGAGAACTGAC  99

seq1  -TCTCTGGACTTGTCTTCGGA-TCTC-TGCATGCACCAAGGTAGGCACAG  143
       |||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  TTCTCTGGACTTGTCTTCGGATTCTCTTGCATGCACCAAGGTAGGCACAG  149

seq1  AAA-CACACC-TAC-ACACCCCTATCACATATGCATGCTCACGTACACAC  190
      ||| |||||| ||| |||||||||||||||||||||||||||||||||||
seq2  AAACCACACCTTACAACACCCCTATCACATATGCATGCTCACGTACACAC  199

seq1  GTGGGGG-AAAAAAAAAGGTTATATTCTTAGGTGCAAACCCACAGGCATG  239
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAAAAAAAAAAGGTTATATTCTTAGGTGCAAACCCACAGGCATG  249

seq1  GGACTTCTCCAGGAGTAAGTGGGACAAATGGAGTAGAACGGAGTTGAAAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTCCAGGAGTAAGTGGGACAAATGGAGTAGAACGGAGTTGAAAG  299

seq1  AGATGGGGAAGCCAGAGGAGAAAGTCCTTATAGGAAAAGGCCCAGGCTCT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGAAGCCAGAGGAGAAAGTCCTTATAGGAAAAGGCCCAGGCTCT  349

seq1  GGGGCTACTAAACAAGAGGAGCCCAGGCTCTGGCAGTGAAGCACACACCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTACTAAACAAGAGGAGCCCAGGCTCTGGCAGTGAAGCACACACCT  399

seq1  GAGTCCAACATTGTTTATGTCATCCCAAATGGAGGCAGGCACTTCCCAGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAACATTGTTTATGTCATCCCAAATGGAGGCAGGCACTTCCCAGA  449

seq1  AAGACTTGTTGGTGGTGTTCAGGATTGCCTAGAAGACATAAGGGTGACTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGTTGGTGGTGTTCAGGATTGCCTAGAAGACATAAGGGTGACTG  499

seq1  ATTGGCATGAAGGTATAAAGGGCTGGCTAATGGGACCACGAATGGAGATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATGAAGGTATAAAGGGCTGGCTAATGGGACCACGAATGGAGATA  549

seq1  AAGACTCAAGGGTGGATTTGGAATGTAGAGTTGGATCGAGTTAAAAGGTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAAGGGTGGATTTGGAATGTAGAGTTGGATCGAGTTAAAAGGTT  599

seq1  ACCTGGACGCCAGCATAGGCATTATTGACCAGAACATCTAGCCGCCCTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACGCCAGCATAGGCATTATTGACCAGAACATCTAGCCGCCCTTT  649

seq1  CTGTTCCCGATCTACTTGCTCGAACAGGCTTTTCACTTCACTCTCCTGGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCGATCTACTTGCTCGAACAGGCTTTTCACTTCACTCTCCTGGC  699

seq1  TTGAATCACACACCACGGGTACACACCGGCCCCCGAGGGACTGTGCCTGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCACACACCACGGGTACACACCGGCCCCCGAGGGACTGTGCCTGG  749

seq1  AGAGGGACAGCGAGGATGAGTTCACAGCAGTGTCACTTTCCGAACTCCAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACAGCGAGGATGAGTTCACAGCAGTGTCACTTTCCGAACTCCAG  799

seq1  TGAAGTTTAGGAACTGAGAGCTCAGGACTCAGCCAACAGCTGGGACATGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTAGGAACTGAGAGCTCAGGACTCAGCCAACAGCTGGGACATGG  849

seq1  CCATGCAATGGCTCCCTCTGGTGTCCGCTTTAGGAATTTCACCACAATGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAATGGCTCCCTCTGGTGTCCGCTTTAGGAATTTCACCACAATGG  899

seq1  CACCTCCCACAACAGAGCAAGGTACATTGGACTTCAGATTTAACATCCGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCACAACAGAGCAAGGTACATTGGACTTCAGATTTAACATCCGC  949

seq1  TTTCACTGAGGGCTACCATATGCAAGACCTTACTTTGTAATTATTCTGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAGGGCTACCATATGCAAGACCTTACTTTGTAATTATTCTGCT  999

seq1  AATTCCAGGCAAGAGATGAGGCATGGCGTCCACTCTCAGACAGAAGTAAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGCAAGAGATGAGGCATGGCGTCCACTCTCAGACAGAAGTAAC  1049

seq1  CATCCTCTTTGTCCTTTCCGACTCCCTTGCTGCTCACTTGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTTGTCCTTTCCGACTCCCTTGCTGCTCACTTGGAATTC  1095

seq1: chr14_56239519_56240565
seq2: B6Ng01-308K10.g_67_1113

seq1  GAATTCAAGAGTCTCAAGGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGTCTCAAGGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAA  50

seq1  TACTGGTGGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAATCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAATCACATG  100

seq1  GTGACTTACATGCAGATAGAACACTCGTGTATATATAAAATCAATAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTACATGCAGATAGAACACTCGTGTATATATAAAATCAATAGATA  150

seq1  AATCTTTTTTAAAAAGTCTCAGGGAGGAGAGCTGTCAAGCAGGAAAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTTTAAAAAGTCTCAGGGAGGAGAGCTGTCAAGCAGGAAAGGAC  200

seq1  TGGAACTATGGCTCAGTGGTTGTGTGTCCTGCTCTTGCATAGGACAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTATGGCTCAGTGGTTGTGTGTCCTGCTCTTGCATAGGACAGGAC  250

seq1  TTCACCACCAGCCTTCAGCCACCTATAACTCCAGCTCTGGGGATCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCAGCCTTCAGCCACCTATAACTCCAGCTCTGGGGATCCAACA  300

seq1  TCTATTGCCCTCTTCTGACCTCCAAGGGTGCATACAAACATACATAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCCCTCTTCTGACCTCCAAGGGTGCATACAAACATACATAAAGT  350

seq1  ATTTTAAAACAATTTTTAGGCCAACCTGGGCTACACAATAAGACCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAACAATTTTTAGGCCAACCTGGGCTACACAATAAGACCTGTCT  400

seq1  CAAAAACAAATAAATAGAAGAAGAAAGCTAAAATTCCAAGATAAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAATAAATAGAAGAAGAAAGCTAAAATTCCAAGATAAAAAATA  450

seq1  GAGATACTGCCAGATAGGTGTCCAGTGTGCACCTAGTGTGTGAAGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTGCCAGATAGGTGTCCAGTGTGCACCTAGTGTGTGAAGAGAGG  500

seq1  ATACAGAGGACTAAAGATGAGACCTATCTTTTCTTCCCAATTTCTTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGACTAAAGATGAGACCTATCTTTTCTTCCCAATTTCTTCCCA  550

seq1  AAGATTCGACACCTTTTAGAGGCTGCAACCCCGGAAAAAACTCGTAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCGACACCTTTTAGAGGCTGCAACCCCGGAAAAAACTCGTAAGGA  600

seq1  GACCCTTCCTGAAGCCACTCCAGACCCCAGGAAGCCTGGTTAGCAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTCCTGAAGCCACTCCAGACCCCAGGAAGCCTGGTTAGCAGAGAG  650

seq1  AATCTTGCTGTAAAAGGGTGCAGAATCCCCAAGGGCTGAAAAATACCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCTGTAAAAGGGTGCAGAATCCCCAAGGGCTGAAAAATACCACT  700

seq1  TTAAAAAAAAAAAAAAAAAGCCAGGCCCAGTTGGCCCCAGTGATCCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAAGCCAGGCCCAGTTGGCCCCAGTGATCCACAC  750

seq1  CTGTAACCCCATCTCCTAGAGGAGCTGAGATGGGAAAACTCCAAGTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCCCATCTCCTAGAGGAGCTGAGATGGGAAAACTCCAAGTACAA  800

seq1  CACATGCCTGGCTTAAGTACTGAGTTCAAAGCCAGCTAAGACCGGTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTGGCTTAAGTACTGAGTTCAAAGCCAGCTAAGACCGGTTAAG  850

seq1  GAGATCATTTAAACATTTACTTTAAAAAGGGGGA-GGGGGGGCGCTGGAG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGATCATTTAAACATTTACTTTAAAAAGGGGGAGGGGGGGGCGCTGGAG  900

seq1  AGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGT  950

seq1  TCAAATCCCAGC-AACTACAT-GGTGGC-TCACAACCACCCATAATG-AG  995
      |||||| ||||| |||||||| |||||| |||||||||||||||||| ||
seq2  TCAAAT-CCAGCTAACTACATGGGTGGCTTCACAACCACCCATAATGAAG  999

seq1  ATCTAATGCCCCCTTCTGGTGCCTCTGAA-GTCAGTTACAATGTACTTAA  1044
      ||||||||||||  ||||||| ||||||| ||||| ||| ||||||||||
seq2  ATCTAATGCCCC--TCTGGTG-CTCTGAAGGTCAG-TAC-ATGTACTTAA  1044

seq1  GAT  1047
      |||
seq2  GAT  1047