BAC Information

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BAC

Clone NameB6Ng01-309B02
Chromosome14 (Build37)
Map Location 39,214,418 - 39,330,167
singlet/doubletdoublet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309B02.bB6Ng01-309B02.g
ACCGA101400GA101401
length1,1291,133
definitionB6Ng01-309B02.b B6Ng01-309B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,214,418 - 39,215,554)(39,329,015 - 39,330,167)
sequence
gaattcttttgagaagcaaagtggatattgggagatgagaagtcaagtaa
accatcacaaagcaatataagaaggtttagcacaaaacagatactcagtt
acatttctggaataaagatagtaggaacactatcttttctgtaatcacat
aattcggatactagaaaagtatgcttttatggaattactactcatacaaa
aatctgaatgtatttcttgaatctgtttttataattcctctattatacct
ttatcatgcaagtcctgactcagtaatatttcagaataaatgagctttca
tttggaatatgctttggctttttaccatcccactctttcctggttttctt
ctttcacaattacaaggatattctggtttctttgtctacctacctatcta
tctatctatctatctatctatctatctatctatctacttttctttctttc
tttctccccttagcaaatgggaacagagaaaatgaccaacatctgacggt
tagattccctcatctgaaaacaatcactacatacaaggtctaggcatgca
ccctagaatgttcccagttcgataagatcatgacccaggcttagcatggt
agagataccatgtcataggtatctctggcccaatgccttaagaggggttg
tgcatagtagaactgtagtagcacaatccagttggcatctatcatgtcta
atgtcacaggctgagtgtctgaggaagcagactgtggcatggggatagta
ttcaggaaatatattggttgtgtgtaatttcaccacttttgtaagtgaag
aaatggggattgtggattgggagaaactggagggttcactaaaggtagca
acaagccccatgaggcatttcgaagctgccttggttctgaacccaatata
gacctttggtcctatcttcagagtatcacattgatctactattatgcagc
tgtgctatctcaaagcagtgcttgaagcatttttagtattatatgctgac
aacttggagacaaagactctactgatgcagagttacagttgtgcatcaga
catcacatgagcccagaatatatatttttaccacaactacaggaacaatt
catcagcttgctatccgacatgtgtgtgt

gaattcagatcaggtctgatggcaagtgtctttacccactgaggacctca
ctagcacttgaagccctgttttgtaattgtattctgtgaagcagaatgct
tatcttgagtgtgagctgcatgaatatgtggcctgatctccagtccagct
gcttcttcattagcacaaatgaatagtcttattttgcttataaaactgtg
aaacagagatgtctatgttcaatgcgattcaacaatagagttttttttta
aaggaaaataaagaggtcacactttgtaatgaggccccaagaaagggaaa
tggggcgctgtgcttttctggagagtgcctttgctttcttggtgattgat
ggcctgtctgtggggatgctggctacagtaatggtgtcatggcctcttct
caacagtggaaaatgccgttggtcccagggtagtggcggtgagagaggac
tgtgcttcctgagctgatacaaccacagatagtcttctcagcttatgata
cagggtgatgtgtatactcgatgctttgcttattttgcaaatgtaaaaga
ggaactagaaaagatagaataaaacttagcaattgtcagtagtcatggtt
tctatttgttgcaccaatattattttatatttatttgcgattatttatgt
tcatgtgtaaattctatgcaaaagtgctgatgaaaattaaaactgtaggc
ttgctgaggtaacaaaggaaggctttagattgcaatctgacctgcattaa
catcctaaagcttccactaaatagctagaatgggacaatgtgataatctg
cctttccctttagggccaggtgacagggctgaacagagctcctaggcaaa
gactcccttgatttccccgttgcaggttatattcctccctttgacagatt
cctgtttgtccttgtccaccaccaccaccactaacccctgatgctatagg
acctgacagggatcagtctgctgtcactctgacacctgctacactttctc
tcatgactactagagtcacttttcccttatgaacatagctctatgctctg
gcagcttgcacatagtcaccgtcccctgtgttgtgacccatgactttatg
atgatggtatcagcaattcaccatatttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_39214418_39215554
seq2: B6Ng01-309B02.b_46_1174

seq1  GAATTCTTTTGAGAAGCAAAGTGGATATTGGGAGATGAGAAGTCAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAGAAGCAAAGTGGATATTGGGAGATGAGAAGTCAAGTAA  50

seq1  ACCATCACAAAGCAATATAAGAAGGTTTAGCACAAAACAGATACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACAAAGCAATATAAGAAGGTTTAGCACAAAACAGATACTCAGTT  100

seq1  ACATTTCTGGAATAAAGATAGTAGGAACACTATCTTTTCTGTAATCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGGAATAAAGATAGTAGGAACACTATCTTTTCTGTAATCACAT  150

seq1  AATTCGGATACTAGAAAAGTATGCTTTTATGGAATTACTACTCATACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGGATACTAGAAAAGTATGCTTTTATGGAATTACTACTCATACAAA  200

seq1  AATCTGAATGTATTTCTTGAATCTGTTTTTATAATTCCTCTATTATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAATGTATTTCTTGAATCTGTTTTTATAATTCCTCTATTATACCT  250

seq1  TTATCATGCAAGTCCTGACTCAGTAATATTTCAGAATAAATGAGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGCAAGTCCTGACTCAGTAATATTTCAGAATAAATGAGCTTTCA  300

seq1  TTTGGAATATGCTTTGGCTTTTTACCATCCCACTCTTTCCTGGTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATATGCTTTGGCTTTTTACCATCCCACTCTTTCCTGGTTTTCTT  350

seq1  CTTTCACAATTACAAGGATATTCTGGTTTCTTTGTCTACCTACCTATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAATTACAAGGATATTCTGGTTTCTTTGTCTACCTACCTATCTA  400

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTACTTTTCTTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTACTTTTCTTTCTTTC  450

seq1  TTTCTCCCCTTAGCAAATGGGAACAGAGAAAATGACCAACATCTGACGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCTTAGCAAATGGGAACAGAGAAAATGACCAACATCTGACGGT  500

seq1  TAGATTCCCTCATCTGAAAACAATCACTACATACAAGGTCTAGGCATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCCCTCATCTGAAAACAATCACTACATACAAGGTCTAGGCATGCA  550

seq1  CCCTAGAATGTTCCCAGTTCGATAAGATCATGACCCAGGCTTAGCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAATGTTCCCAGTTCGATAAGATCATGACCCAGGCTTAGCATGGT  600

seq1  AGAGATACCATGTCATAGGTATCTCTGGCCCAATGCCTTAAGAGGGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACCATGTCATAGGTATCTCTGGCCCAATGCCTTAAGAGGGGTTG  650

seq1  TGCATAGTAGAACTGTAGTAGCACAATCCAGTTGGCATCTATCATGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTAGAACTGTAGTAGCACAATCCAGTTGGCATCTATCATGTCTA  700

seq1  ATGTCACAGGCTGAGTGTCTGAGGAAGCAGACTGTGGCATGGGGATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGGCTGAGTGTCTGAGGAAGCAGACTGTGGCATGGGGATAGTA  750

seq1  TTCAGGAAATATATTGGTTGTGTGTAATTTCACCACTTTTGTAAGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAATATATTGGTTGTGTGTAATTTCACCACTTTTGTAAGTGAAG  800

seq1  AAATGGGGATTGTGGATTGGGAGAAACTGGAGGGTTCACTAAAGGTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGATTGTGGATTGGGAGAAACTGGAGGGTTCACTAAAGGTAGCA  850

seq1  ACAAGCCCCATGAGGCATTTCGAAGCTGCCTTGGTTCTGAACCCAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCCATGAGGCATTTCGAAGCTGCCTTGGTTCTGAACCCAATATA  900

seq1  GACCTTTGGTCCTATCTTCAGAGTATCACATTGATCTACTATTATTGCAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACCTTTGGTCCTATCTTCAGAGTATCACATTGATCTACTATTA-TGCAG  949

seq1  CTGTGCTATCTCAAAGCAGGTTGCTTGAAAGCATTTTTTAGTATTATATG  1000
      |||||||||||||||||||  |||||| ||||| ||||||||||||||||
seq2  CTGTGCTATCTCAAAGCAG--TGCTTG-AAGCA-TTTTTAGTATTATATG  995

seq1  CTGACAACTTGGAGACAAAGACCTCTACTGATGCAGAAGTTAACAGTTGT  1050
      ||||||||||||||||||||| |||||||||||||| |||| ||||||||
seq2  CTGACAACTTGGAGACAAAGA-CTCTACTGATGCAG-AGTT-ACAGTTGT  1042

seq1  GCATCAGAACATCCACATGAGCCCAGAATATATA-TTTTACACAAACTAC  1099
      ||||||| |||| ||||||||||||||||||||| ||||||   ||||||
seq2  GCATCAG-ACAT-CACATGAGCCCAGAATATATATTTTTACCACAACTAC  1090

seq1  AGGAACAA-TCATCAGTATGCTAT-CGACAGTGTGTGTGT  1137
      |||||||| |||||||  |||||| ||||| |||||||||
seq2  AGGAACAATTCATCAGCTTGCTATCCGACA-TGTGTGTGT  1129


seq1: chr14_39329015_39330167
seq2: B6Ng01-309B02.g_66_1198 (reverse)

seq1  AAAGT-AATAT-GTGAAATTTGCTGATTACACACATCATTCATAAAGTCA  48
      ||||| ||||| |||||  ||||||||   || ||||| |||||||||| 
seq2  AAAGTAAATATGGTGAA--TTGCTGAT---AC-CATCA-TCATAAAGTC-  42

seq1  AGGGGTCACAACACAGGTGAACGGTGAACTATGTTTGCCAAAGGCTGCCA  98
      | ||||||||||||||| | |||||| ||||||  |||   | |||||||
seq2  ATGGGTCACAACACAGG-GGACGGTG-ACTATG--TGC---AAGCTGCCA  85

seq1  GAGCATAGAGCTATG-TCATTAGGGGAAAGTGACTCTAAGTAGTCATTGA  147
      ||||||||||||||| |||| |||| ||||||||||| |||||||| |||
seq2  GAGCATAGAGCTATGTTCATAAGGGAAAAGTGACTCT-AGTAGTCA-TGA  133

seq1  GAGAAAGTGGTAGCAGGTGTCAGAGTGACAAGCAGACCTGATTCCCTTGT  197
      |||||||| |||||||||||||||||||| |||||| |||||  || |||
seq2  GAGAAAGT-GTAGCAGGTGTCAGAGTGAC-AGCAGA-CTGAT--CCCTGT  178

seq1  CAGGTCCTATAGCATCAGGGGTTAGTGGTGGTGGTGGTGGACAAGGACAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTATAGCATCAGGGGTTAGTGGTGGTGGTGGTGGACAAGGACAA  228

seq1  ACAGGAATCTGTCAAAGGGAGGAATATAACCCTGCAACGGGGAAATCAAG  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAGGAATCTGTCAAAGGGAGGAATATAA-CCTGCAACGGGGAAATCAAG  277

seq1  GGAGTCTTTGCCTAGGAGCTCTGTTCAGCCCTGTCACCTGGCCCTAAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTTTGCCTAGGAGCTCTGTTCAGCCCTGTCACCTGGCCCTAAAGG  327

seq1  GAAAGGCAGATTATCACATTGTCCCATTCTAGCTATTTAGTGGAAGCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAGATTATCACATTGTCCCATTCTAGCTATTTAGTGGAAGCTTT  377

seq1  AGGATGTTAATGCAGGTCAGATTGCAATCTAAAGCCTTCCTTTGTTACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTTAATGCAGGTCAGATTGCAATCTAAAGCCTTCCTTTGTTACCT  427

seq1  CAGCAAGCCTACAGTTTTAATTTTCATCAGCACTTTTGCATAGAATTTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCCTACAGTTTTAATTTTCATCAGCACTTTTGCATAGAATTTAC  477

seq1  ACATGAACATAAATAATCGCAAATAAATATAAAATAATATTGGTGCAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACATAAATAATCGCAAATAAATATAAAATAATATTGGTGCAACA  527

seq1  AATAGAAACCATGACTACTGACAATTGCTAAGTTTTATTCTATCTTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACCATGACTACTGACAATTGCTAAGTTTTATTCTATCTTTTCT  577

seq1  AGTTCCTCTTTTACATTTGCAAAATAAGCAAAGCATCGAGTATACACATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCTTTTACATTTGCAAAATAAGCAAAGCATCGAGTATACACATC  627

seq1  ACCCTGTATCATAAGCTGAGAAGACTATCTGTGGTTGTATCAGCTCAGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTATCATAAGCTGAGAAGACTATCTGTGGTTGTATCAGCTCAGGA  677

seq1  AGCACAGTCCTCTCTCACCGCCACTACCCTGGGACCAACGGCATTTTCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTCCTCTCTCACCGCCACTACCCTGGGACCAACGGCATTTTCCA  727

seq1  CTGTTGAGAAGAGGCCATGACACCATTACTGTAGCCAGCATCCCCACAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGAAGAGGCCATGACACCATTACTGTAGCCAGCATCCCCACAGA  777

seq1  CAGGCCATCAATCACCAAGAAAGCAAAGGCACTCTCCAGAAAAGCACAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATCAATCACCAAGAAAGCAAAGGCACTCTCCAGAAAAGCACAGC  827

seq1  GCCCCATTTCCCTTTCTTGGGGCCTCATTACAAAGTGTGACCTCTTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATTTCCCTTTCTTGGGGCCTCATTACAAAGTGTGACCTCTTTATT  877

seq1  TTCCTTTAAAAAAAAACTCTATTGTTGAATCGCATTGAACATAGACATCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAAAAAAAACTCTATTGTTGAATCGCATTGAACATAGACATCT  927

seq1  CTGTTTCACAGTTTTATAAGCAAAATAAGACTATTCATTTGTGCTAATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCACAGTTTTATAAGCAAAATAAGACTATTCATTTGTGCTAATGA  977

seq1  AGAAGCAGCTGGACTGGAGATCAGGCCACATATTCATGCAGCTCACACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGCTGGACTGGAGATCAGGCCACATATTCATGCAGCTCACACTC  1027

seq1  AAGATAAGCATTCTGCTTCACAGAATACAATTACAAAACAGGGCTTCAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGCATTCTGCTTCACAGAATACAATTACAAAACAGGGCTTCAAG  1077

seq1  TGCTAGTGAGGTCCTCAGTGGGTAAAGACACTTGCCATCAGACCTGATCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGAGGTCCTCAGTGGGTAAAGACACTTGCCATCAGACCTGATCT  1127

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1133


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