BAC Information

Click to search

BAC

Clone NameB6Ng01-309D24
Chromosome14 (Build37)
Map Location 109,608,066 - 109,609,168
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309D24.bB6Ng01-309D24.g
ACCGA101538GA101539
length1,1241,001
definitionB6Ng01-309D24.b B6Ng01-309D24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtgtgactcctgcactccacaaaggacaaattctacttgctc
tgtcaagctggaactaacattaaaatatgagctttttctgaatgattttc
ccagatttcatcaccattcattcatcttttcaaaccctcggatgagggat
atttattttcttcctggcttatttctactaccatatgctttataagtttc
ctttcagtcttgaataacatctattctctcaggcagtttcactagccttt
tctatccttaaagtataaccacagatatgaaaaaacagtaaatcatttta
ctactgatcaaccaaacaaaactttcttcactatatgtttcctattcata
gctgtattttcccatttgtgaaatggagaaatgaattcttgcactgaaaa
ctttatgttttgtgattaccagaagacatgactaagtgaaagcaaagtta
agtagcttaaggaagtaacctgtttcatatctgaattaaaattatttttc
atcctggtggtggtgttgcatgcctttaattccagcacttggaacgcaga
ggcaggtggatttctgagtgtgaggccagcctggtctacaaagtgagttc
caggacagccagggctacacagagataccctgtctcaaacacacacacac
acacacacacacacacacacacacacacacgcacacacacacacgcgcgc
atatatatatatatatatatatatatatatatatatatatatatatatat
acacatgtgtgcgtgagaacattgtatttagtgtgtgtgtgtagtgagtg
tgtgcgtgtgtagcgaaacagtaatttcccctgctagatagaaagtgcta
tttctttcatatgttcctcaagcccctgtctttctccaaggttaaacatc
aagtttatttttctattctaccggttcttgcactgtctgtgtgagcgcta
aacaccaaaatgctctcttatactgccacctcctacttggttattattgc
tttaaaggtcaacagcgtttgaactttattagagtccatgacccctggaa
aagcagttggtgattaatgattatgccatttctattcttctgaactctgc
ccaaggcttgagattcttctccat

gaattctttgtttagctttctgccccattttttaatggagtttttgattt
tctagagtccatcctttttagttctttatatatattggatattagcccca
tatctgatttagaattggtaaagatcctttcccagtctgttggtggcctt
tttgtcttattgatagtgtctttagccttacagaaggtttacaattttat
taggtcccatttgtcaattcttgatcttacagaacaagccattgctgttc
tattcatgaatttccccccgtgcccatatcttcgtggtttttccccacaa
agttgaaatacagatcaattgtgataaaaatttcatggtactagtatatc
gacagagaggtagaccaatggaatagaattgaagacccagaaatgaaccc
acacacctatggtcccttgatctttgacaagagagctaaaaccatacagt
ggaaaaaaaaaaagacagcattttagtcctggcacaactggaggttatca
tgtagaagaatgaaaattgatccattctaatcaccaactctgttttatgt
atttatctgtatttttatttagtctgctttaattattaccaaataagtat
gaactttagtgtttaatatatgataatagaataaattgcaaatattttta
atattttcaatactgatttatatactttaatatcacttgatatattttct
gattatgtaaatctaatggaagtgttcactgtttctaatgagttttaatt
tgatgtaattttaataattggcaaaaatttttaaaagctacgtttctttc
aaggggaattttgttaagcaatttatattgaattgaaatacatattttaa
aattttttcaacaaaataatttttaagtatattttaaaatttgtgtgttt
aagacaatattacaatttattcttctatatatagattacttgtttattat
atatattaaatatataatatatataatattatataatataatatgtttaa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109608066_109609168
seq2: B6Ng01-309D24.b_45_1168

seq1  GAATTCATGTGTGACTCCTGCACTCCACAAAGGACAAATTCTACTTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTGACTCCTGCACTCCACAAAGGACAAATTCTACTTGCTC  50

seq1  TGTCAAGCTGGAACTAACATTAAAATATGAGCTTTTTCTGAATGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCTGGAACTAACATTAAAATATGAGCTTTTTCTGAATGATTTTC  100

seq1  CCAGATTTCATCACCATTCATTCATCTTTTCAAACCCTCGGATGAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTCATCACCATTCATTCATCTTTTCAAACCCTCGGATGAGGGAT  150

seq1  ATTTATTTTCTTCCTGGCTTATTTCTACTACCATATGCTTTATAAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTCTTCCTGGCTTATTTCTACTACCATATGCTTTATAAGTTTC  200

seq1  CTTTCAGTCTTGAATAACATCTATTCTCTCAGGCAGTTTCACTAGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTCTTGAATAACATCTATTCTCTCAGGCAGTTTCACTAGCCTTT  250

seq1  TCTATCCTTAAAGTATAACCACAGATATGAAAAAACAGTAAATCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTTAAAGTATAACCACAGATATGAAAAAACAGTAAATCATTTTA  300

seq1  CTACTGATCAACCAAACAAAACTTTCTTCACTATATGTTTCCTATTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATCAACCAAACAAAACTTTCTTCACTATATGTTTCCTATTCATA  350

seq1  GCTGTATTTTCCCATTTGTGAAATGGAGAAATGAATTCTTGCACTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATTTTCCCATTTGTGAAATGGAGAAATGAATTCTTGCACTGAAAA  400

seq1  CTTTATGTTTTGTGATTACCAGAAGACATGACTAAGTGAAAGCAAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTTGTGATTACCAGAAGACATGACTAAGTGAAAGCAAAGTTA  450

seq1  AGTAGCTTAAGGAAGTAACCTGTTTCATATCTGAATTAAAATTATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTAAGGAAGTAACCTGTTTCATATCTGAATTAAAATTATTTTTC  500

seq1  ATCCTGGTGGTGGTGTTGCATGCCTTTAATTCCAGCACTTGGAACGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTGGTGGTGTTGCATGCCTTTAATTCCAGCACTTGGAACGCAGA  550

seq1  GGCAGGTGGATTTCTGAGTGTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGATTTCTGAGTGTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  600

seq1  CAGGACAGCCAGGGCTACACAGAGATACCCTGTCTCAAACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTACACAGAGATACCCTGTCTCAAACACACACACAC  650

seq1  ACACACACACACACACACACACACACACACGCACACACACACACGCGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACGCACACACACACACGCGCGC  700

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATTT  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  750

seq1  TCACATTAGTGCAACAAAACATT-TATTTAGT-TCTGCTTATAGTAAATT  798
       |||||  ||||   | |||||| |||||||| | ||  | |||| | | 
seq2  ACACATGTGTGCGTGAGAACATTGTATTTAGTGTGTGTGTGTAGTGAGTG  800

seq1  ACTCATTGTATAGGCTAACAGTAA-TTCCCCTGCTAGATAGAAAGTGCTA  847
        |   ||| |||   |||||||| |||||||||||||||||||||||||
seq2  TGTGCGTGTGTAGCGAAACAGTAATTTCCCCTGCTAGATAGAAAGTGCTA  850

seq1  ATTTCTTCATATGTTCCTC-AGGCCCTGTC-TTCTCCAAGGTTAAACATC  895
       ||  |||||||||||||| || ||||||| |||||||||||||||||||
seq2  TTTCTTTCATATGTTCCTCAAGCCCCTGTCTTTCTCCAAGGTTAAACATC  900

seq1  AAGTT--ATTTTCTATTCTACC-GTTCTTGCACTGTCTGTGTGAGCGCTA  942
      |||||   |||||||||||||| |||||||||||||||||||||||||||
seq2  AAGTTTATTTTTCTATTCTACCGGTTCTTGCACTGTCTGTGTGAGCGCTA  950

seq1  AACACC-AAATGCTCTC-TATACTGCCACCTCCTACTTGG-TAATATTGC  989
      |||||| |||||||||| |||||||||||||||||||||| || ||||||
seq2  AACACCAAAATGCTCTCTTATACTGCCACCTCCTACTTGGTTATTATTGC  1000

seq1  TTTAAAAGTCAACAGCG-TTGAACTTTATTAGAGTCCATGA-CCCTGG-A  1036
      |||||| |||||||||| ||||||||||||||||||||||| |||||| |
seq2  TTTAAAGGTCAACAGCGTTTGAACTTTATTAGAGTCCATGACCCCTGGAA  1050

seq1  AAGCAG-TGGTGATTAAAGA-TATGCCA-TTCTAT--CTCTGACCTC--G  1079
      |||||| |||||||||| || ||||||| ||||||   ||||| |||   
seq2  AAGCAGTTGGTGATTAATGATTATGCCATTTCTATTCTTCTGAACTCTGC  1100

seq1  CCAAGGCTTGAAGATTC-TCTCCAT  1103
      |||||||||| |||||| |||||||
seq2  CCAAGGCTTG-AGATTCTTCTCCAT  1124


| Home | SequenceCutter | Blast | Download |