BAC Information

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BAC

Clone NameB6Ng01-309E05
Chromosome14 (Build37)
Map Location 17,775,022 - 17,776,104
singlet/doubletsinglet
Overlap genenone
Upstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309E05.bB6Ng01-309E05.g
ACCGA101548GA101549
length1,0181,092
definitionB6Ng01-309E05.b B6Ng01-309E05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttccgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatttccgtatattaaacc
agccatgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgtacttggattcggttagcgagaattttattgaagatttttta
catctatattcataagggaaattggtctgaatttctctatctttgttgga
tctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagtt
gggaagagttccatctacttctattttgtggaatagtttatgcagaactg
gaattagatcttctttgaaggtctggtagaactctgcactaaacccatct
ggtcctgggcttttatttttttggctgggagactattaatgactgctact
atttctttaggggatatgggattgtttagatcattaacttgatcctgatt
taactttggtacctggtatctgtctagaaatttgtccatttcatccaggt
tttccagttttgttgagtatagccttttgtagaaggatctgatggtgttt
aggatttctccaggatctgttgttatgtctcccttttcatttctgatttt
gttagttagggtgttgtccctgtgccctctagtgagtctagctaagggtt
tatctatcttgtttattttctcaaagaaccaactcctcctttggttaatt
ctttgaatatttcttcttgtttccacttgggttgatttcaccccggagtt
tgattattcctgcccttctactccctcttgggtgaatttcttcctttttt
ttctagagcttttagatgtgttgtcaagctgctagtgggtgtccttctag
tttctttttagagggacaaaaagctataactttccctctagaaatgtctc
attgtgctccccaaaggt
gaattccacttcctacagagtcatttattgagagacagaagcaattaata
ttgaaaataaaataattgtgaacttctgaactaaattaccatgcatgcat
aatgtagtgtcatgtcagtctttgaatgcttcccacattaggatctgtaa
ggctggtctctaaactgcagcctcctccaactttagcatttctttcttct
cccttttccagaaagagggtcccaagagtagcaaaaccattgttcaggat
ttagaatatgtatccaggtttgggtttgggaatttgatgtgtagagttat
gctatccactgataaatttataaaagaaagaaagaaaataagaagctaat
gaagcatccctaggatcactgacaggaagaaatcgttttattgctcttta
tttagcactgccatgatgagtatttggtaaatgagtcgcctattgacagg
taccattgtacacctggtaattgtactgaaaacctcgagaattcagcttg
taatgcaaagacagctcccaactgattatggttcaaacaactgatttctt
tttgcctctgagatggggtaaagacagcagatacatggtagaaaacacac
ttatgaatttgttctgttctgggctagtgatagtctctcgaaatgtttca
tagcatccagtcacatctgttgtggatgggtctggtgctgtttgtatttt
gatgctaattctgctctcctgggagggtttgcagacaaggaatgagtccc
atgtactcagttgacttcttgtgagccaacccctaatgaataaaggaacc
aatcactgttcaagtaggagggatttctgggttagatggaggaagagaga
aagcaagagagagttaggtcccttttgcatggggatagacatgaagaaca
tgttgtagctacaagtgtcttctgttttcaatggttggaaactgttcagg
attttgccactggagatttagattttaataggcttacagatttaggattt
tagtttctgtgcccaatgatttgatttttggagttttttgtcgtttcgaa
cttatattcaatgcttgtcttctttcatgccacggcttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17775022_17776104
seq2: B6Ng01-309E05.g_65_1156 (reverse)

seq1  GGACAAGCCGCTGCATGAAGGAAAACAA-CA-TGAA-CTTAGTTCAGAAA  47
      ||||||||||  ||||||| ||| |||| || ||||  | ||||| ||||
seq2  GGACAAGCCGTGGCATGAAAGAAGACAAGCATTGAATATAAGTTC-GAAA  49

seq1  CGAC-AAAAACTCAAAAACTC-AATCATTGGGCACAGAAACTAAAATCCT  95
      |||| |||||||| |||| || ||||||||||||||||||||||||||||
seq2  CGACAAAAAACTCCAAAAATCAAATCATTGGGCACAGAAACTAAAATCCT  99

seq1  AATCTTGTAAGCCTTATTAAATCTAAATCCTCCAGTGGC-AAATCCTG-A  143
      ||   |||||||||  | |||||||||| |||||||||| |||||||| |
seq2  AAATCTGTAAGCCTATTAAAATCTAAAT-CTCCAGTGGCAAAATCCTGAA  148

seq1  CAGTT--CCACCATTGAAACCAGGAGACACTTGTAGCTACACCTTG-TCT  190
      |||||  | |||||||||| ||| ||||||||||||||||| | || |||
seq2  CAGTTTCCAACCATTGAAAACAGAAGACACTTGTAGCTACAACATGTTCT  198

seq1  TCATGTCTATCCCCATGCAAAA-GGACCTAACTCTCTCCTGCTTTCTCTC  239
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TCATGTCTATCCCCATGCAAAAGGGACCTAACTCTCTCTTGCTTTCTCTC  248

seq1  TTCCTCCATCTAACCCAGAAATCCCTCCTACTTGAACAGTGATTGGTTCC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATCTAACCCAGAAATCCCTCCTACTTGAACAGTGATTGGTTCC  298

seq1  TTTATTCATTAGGGGTTGGCTCACAAGAAGTCAACTGAGTACATGGGACT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTAGGGGTTGGCTCACAAGAAGTCAACTGAGTACATGGGACT  348

seq1  CATTCCTTGTCTGCAAACCCTCCCAGGAGAGCAGAATTAGCATCAAAATA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTCTGCAAACCCTCCCAGGAGAGCAGAATTAGCATCAAAATA  398

seq1  CAAACAGCACCAGACCCATCCACAACAGATGTGACTGGATGCTATGAAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCACCAGACCCATCCACAACAGATGTGACTGGATGCTATGAAAC  448

seq1  ATTTCGAGAGACTATCACTAGCCCAGAACAGAACAAATTCATAAGTGTGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAGAGACTATCACTAGCCCAGAACAGAACAAATTCATAAGTGTGT  498

seq1  TTTCTACCATGTATCTGCTGTCTTTACCCCATCTCAGAGGCAAAAAGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCATGTATCTGCTGTCTTTACCCCATCTCAGAGGCAAAAAGAAA  548

seq1  TCAGTTGTTTGAACCATAATCAGTTGGGAGCTGTCTTTGCATTACAAGCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTTTGAACCATAATCAGTTGGGAGCTGTCTTTGCATTACAAGCT  598

seq1  GAATTCTCGAGGTTTTCAGTACAATTACCAGGTGTACAATGGTACCTGTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGAGGTTTTCAGTACAATTACCAGGTGTACAATGGTACCTGTC  648

seq1  AATAGGCGACTCATTTACCAAATACTCATCATGGCAGTGCTAAATAAAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCGACTCATTTACCAAATACTCATCATGGCAGTGCTAAATAAAGA  698

seq1  GCAATAAAACGATTTCTTCCTGTCAGTGATCCTAGGGATGCTTCATTAGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAACGATTTCTTCCTGTCAGTGATCCTAGGGATGCTTCATTAGC  748

seq1  TTCTTATTTTCTTTCTTTCTTTTATAAATTTATCAGTGGATAGCATAACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTCTTTCTTTCTTTTATAAATTTATCAGTGGATAGCATAACT  798

seq1  CTACACATCAAATTCCCAAACCCAAACCTGGATACATATTCTAAATCCTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATCAAATTCCCAAACCCAAACCTGGATACATATTCTAAATCCTG  848

seq1  AACAATGGTTTTGCTACTCTTGGGACCCTCTTTCTGGAAAAGGGAGAAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGTTTTGCTACTCTTGGGACCCTCTTTCTGGAAAAGGGAGAAGA  898

seq1  AAGAAATGCTAAAGTTGGAGGAGGCTGCAGTTTAGAGACCAGCCTTACAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGCTAAAGTTGGAGGAGGCTGCAGTTTAGAGACCAGCCTTACAG  948

seq1  ATCCTAATGTGGGAAGCATTCAAAGACTGACATGACACTACATTATGCAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATGTGGGAAGCATTCAAAGACTGACATGACACTACATTATGCAT  998

seq1  GCATGGTAATTTAGTTCAGAAGTTCACAATTATTTTATTTTCAATATTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTAATTTAGTTCAGAAGTTCACAATTATTTTATTTTCAATATTAA  1048

seq1  TTGCTTCTGTCTCTCAATAAATGACTCTGTAGGAAGTGGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGTCTCTCAATAAATGACTCTGTAGGAAGTGGAATTC  1092