BAC Information

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BAC

Clone NameB6Ng01-309I23
Chromosome14 (Build37)
Map Location 65,356,788 - 65,507,546
singlet/doubletdoublet
Overlap geneKif13b, Hmbox1
Upstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneLOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309I23.bB6Ng01-309I23.g
ACCGA101771GA101772
length1,1321,068
definitionB6Ng01-309I23.b B6Ng01-309I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,506,401 - 65,507,546)(65,356,788 - 65,357,868)
sequence
gaattcaatatggaattgtaataattgaatatcatttgaggggttatata
cagtatttgtaagaataaaaggaaggatggtgttttgtttgcaaaggtcc
atcagaaaaagattattagttcatgctttataggagaacaggtggcagct
tgacttgctgaggcctttaatctcttcaccatgtttagacgattagcaat
cacaattccatgtcagttttcatcttgaacaagaatcatgttctttaagg
actctaatttttatttaagtatttttttattttggtgaaagaatgagtca
tgtgctttgtcattcttaaggatgtctggactctgaaaatgtgctattta
aataagtaataggctgagagtatttattactgaatacttttctttttagt
gttaactattctgtgtatttattatatgtaatagaaaattaatagacact
tttaatatgaaactaatattttaaaccattctacattcttttcatttttt
cttatacagaagagagggagaggaagcagctaattgtaataaacatatta
ccatgctaataacttcactcatgagaatggtattgatttttgccccggaa
gcatttccaaggtttccagatgggtgtcagttctacagtaccttccttaa
cctgcagacccacagtctccgtacagctgatttttcactgcctttgcttt
tcatttttccagggcttctatgttttcattccctataatgaggccataca
cactgcacattgaattattcacagcatgcagttcccggtccccccacatg
agacttgtatccacagtggcattcactgaggtgtctgtctgatggtgtga
tgtttcaggactggagtatttggtgtttcttggtttgttgtaatttcata
tatcacccaagtttagtctgtttccctttgattttgtgtccttcctttct
gtgtctccccacctctctgcttcactttctttagcaagatgagatttcct
actttcaacatacattgtgggtctgtcctctgtttgtaagagggacaagt
catggtgatcagagaaattcaagcctttcttgcaatcggaagattccaag
ccagtttgtgcacaggatacaggtaagaccgc
gaattcaggactacagtggccctgccgtgacaaggacactttctcctcgc
tccttcccaacccctggctctttcaatctttccgtctctacttccttgat
ggaccctgatctcatcggggaggggttagaaatagatgtccatttttgcc
aagccctaatttttaacttttaaacttattttcatgttttaaatgtacac
tgttgtggagctggccagtgactctgctggccatgacctgagaggaggca
ttaaactctgtgtaattcatggtggcacaggaaggaatgtgagtgtgata
agatgtgaaggagaagacggggcagcttgaaaagccttgtgagctttata
gaggtgaccttcactctggcaaactggagctgttttatacattttggaaa
gaagagaaaaatgtgatcatctttacgtttctcaagaatactttatttat
aggtaacattgaaggataaagatatgatggtcttctgaggctgtcagatc
ctctgtgtcttgctgcctctgtgctgggaatcaccacttctctggtgtgt
ttgcaggagcggcaaaagcagcttgagagccttggcatatctcttcagac
ttctggaatcaaggttggggatgacaagtgcttcctggttaacctgaatg
ctgacccagctctgaatgaactcctggtgtactacttaaaggtgaatgtc
ctgccttcacagagctggagcactctgtgagatgtggagaactgtggtcc
ttaccaattgcttttagttcatcaattggagtgaagggcagtcttgggtt
ttggagatcagttattgttgcctgtctttgaatgatgtcattgaactact
tttataaaaagaatattctgatattatttctagcaagtaaataatgtacc
accatttttaacataatttataggaagtactttctaacataagtggaaat
aattaaatttcttacttagcaacacttgatagagatgtatttctatattt
tttaggaaaattaacagttaaatatcaccttattgaaaaaaacaaaggaa
gccagatcacctagacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65506401_65507546
seq2: B6Ng01-309I23.b_49_1180 (reverse)

seq1  GCGGCTCTTACCTGTTACCTGTGCAACAACT-GCTTGGGAAATCCTCCGA  49
      |||| ||||||||||  ||||||||  |||| ||||||  |||| |||||
seq2  GCGG-TCTTACCTGTATCCTGTGCACAAACTGGCTTGG--AATCTTCCGA  47

seq1  TTGGCAAGAAAGGCTTTGATTTCCTCTTTTATCACACTG--CTGTCCCTC  97
      || |||||||||||||  |||   ||| | |||||  ||   ||||||||
seq2  TT-GCAAGAAAGGCTTGAATT---TCTCTGATCACCATGACTTGTCCCTC  93

seq1  CTAACAAAAACAGAAGACAAGACCAACAATGTATGTTGAAGGTAGAAATC  147
       |   | ||||||| ||| ||||| ||||||||||||||| |||| ||  
seq2  TT---ACAAACAGAGGAC-AGACCCACAATGTATGTTGAAAGTAGGAAAT  139

seq1  CTCATCTTTGCTAAAAGAAAGGTGAAGCAGAGAGGTGGGGAGGACACAGA  197
      |||||| ||||| ||||||| |||||||||||||||||||| ||||||||
seq2  CTCATC-TTGCT-AAAGAAA-GTGAAGCAGAGAGGTGGGGA-GACACAGA  185

seq1  AAGGAAGGACACAAAAATCAAAGGGAAACAGACTAAACTTGGGTGATAAT  247
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AAGGAAGGACAC-AAAATCAAAGGGAAACAGACTAAACTTGGGTGAT-AT  233

seq1  ATGAAATTACAACAAACCAAGAAACACCAAATACTCCAGTCCTGAAACAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTACAACAAACCAAGAAACACCAAATACTCCAGTCCTGAAACAT  283

seq1  CACACCATCAGACAGACACCTCAGTGAATGCCACTGTGGATACAAGTCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATCAGACAGACACCTCAGTGAATGCCACTGTGGATACAAGTCTC  333

seq1  ATGTGGGGGGACCGGGAACTGCATGCTGTGAATAATTCAATGTGCAGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGGGACCGGGAACTGCATGCTGTGAATAATTCAATGTGCAGTGT  383

seq1  GTATGGCCTCATTATAGGGAATGAAAACATAGAAGCCCTGGAAAAATGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCCTCATTATAGGGAATGAAAACATAGAAGCCCTGGAAAAATGAA  433

seq1  AAGCAAAGGCAGTGAAAAATCAGCTGTACGGAGACTGTGGGTCTGCAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGCAGTGAAAAATCAGCTGTACGGAGACTGTGGGTCTGCAGGT  483

seq1  TAAGGAAGGTACTGTAGAACTGACACCCATCTGGAAACCTTGGAAATGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGGTACTGTAGAACTGACACCCATCTGGAAACCTTGGAAATGCT  533

seq1  TCCGGGGCAAAAATCAATACCATTCTCATGAGTGAAGTTATTAGCATGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGCAAAAATCAATACCATTCTCATGAGTGAAGTTATTAGCATGGT  583

seq1  AATATGTTTATTACAATTAGCTGCTTCCTCTCCCTCTCTTCTGTATAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTATTACAATTAGCTGCTTCCTCTCCCTCTCTTCTGTATAAGA  633

seq1  AAAAATGAAAAGAATGTAGAATGGTTTAAAATATTAGTTTCATATTAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAAGAATGTAGAATGGTTTAAAATATTAGTTTCATATTAAAA  683

seq1  GTGTCTATTAATTTTCTATTACATATAATAAATACACAGAATAGTTAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATTAATTTTCTATTACATATAATAAATACACAGAATAGTTAACA  733

seq1  CTAAAAAGAAAAGTATTCAGTAATAAATACTCTCAGCCTATTACTTATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAAAAGTATTCAGTAATAAATACTCTCAGCCTATTACTTATTT  783

seq1  AAATAGCACATTTTCAGAGTCCAGACATCCTTAAGAATGACAAAGCACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCACATTTTCAGAGTCCAGACATCCTTAAGAATGACAAAGCACAT  833

seq1  GACTCATTCTTTCACCAAAATAAAAAAATACTTAAATAAAAATTAGAGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTCTTTCACCAAAATAAAAAAATACTTAAATAAAAATTAGAGTC  883

seq1  CTTAAAGAACATGATTCTTGTTCAAGATGAAAACTGACATGGAATTGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAACATGATTCTTGTTCAAGATGAAAACTGACATGGAATTGTGA  933

seq1  TTGCTAATCGTCTAAACATGGTGAAGAGATTAAAGGCCTCAGCAAGTCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATCGTCTAAACATGGTGAAGAGATTAAAGGCCTCAGCAAGTCAA  983

seq1  GCTGCCACCTGTTCTCCTATAAAGCATGAACTAATAATCTTTTTCTGATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACCTGTTCTCCTATAAAGCATGAACTAATAATCTTTTTCTGATG  1033

seq1  GACCTTTGCAAACAAAACACCATCCTTCCTTTTATTCTTACAAATACTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGCAAACAAAACACCATCCTTCCTTTTATTCTTACAAATACTGT  1083

seq1  ATATAACCCCTCAAATGATATTCAATTATTACAATTCCATATTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACCCCTCAAATGATATTCAATTATTACAATTCCATATTGAATTC  1132

seq1: chr14_65356788_65357868
seq2: B6Ng01-309I23.g_68_1135

seq1  GAATTCAGGACTACAGTGGCCCTGCCGTGACAAGGACACTTTCTCCTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTACAGTGGCCCTGCCGTGACAAGGACACTTTCTCCTCGC  50

seq1  TCCTTCCCAACCCCTGGCTCTTTCAATCTTTCCGTCTCTACTTCCTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCAACCCCTGGCTCTTTCAATCTTTCCGTCTCTACTTCCTTGAT  100

seq1  GGACCCTGATCTCATCGGGGAGGGGTTAGAAATAGATGTCCATTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGATCTCATCGGGGAGGGGTTAGAAATAGATGTCCATTTTTGCC  150

seq1  AAGCCCTAATTTTTAACTTTTAAACTTATTTTCATGTTTTAAATGTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTAATTTTTAACTTTTAAACTTATTTTCATGTTTTAAATGTACAC  200

seq1  TGTTGTGGAGCTGGCCAGTGACTCTGCTGGCCATGACCTGAGAGGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGAGCTGGCCAGTGACTCTGCTGGCCATGACCTGAGAGGAGGCA  250

seq1  TTAAACTCTGTGTAATTCATGGTGGCACAGGAAGGAATGTGAGTGTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTGTGTAATTCATGGTGGCACAGGAAGGAATGTGAGTGTGATA  300

seq1  AGATGTGAAGGAGAAGACGGGGCAGCTTGAAAAGCCTTGTGAGCTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAAGGAGAAGACGGGGCAGCTTGAAAAGCCTTGTGAGCTTTATA  350

seq1  GAGGTGACCTTCACTCTGGCAAACTGGAGCTGTTTTATACATTTTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACCTTCACTCTGGCAAACTGGAGCTGTTTTATACATTTTGGAAA  400

seq1  GAAGAGAAAAATGTGATCATCTTTACGTTTCTCAAGAATACTTTATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAATGTGATCATCTTTACGTTTCTCAAGAATACTTTATTTAT  450

seq1  AGGTAACATTGAAGGATAAAGATATGATGGTCTTCTGAGGCTGTCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACATTGAAGGATAAAGATATGATGGTCTTCTGAGGCTGTCAGATC  500

seq1  CTCTGTGTCTTGCTGCCTCTGTGCTGGGAATCACCACTTCTCTGGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTTGCTGCCTCTGTGCTGGGAATCACCACTTCTCTGGTGTGT  550

seq1  TTGCAGGAGCGGCAAAAGCAGCTTGAGAGCCTTGGCATATCTCTTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGAGCGGCAAAAGCAGCTTGAGAGCCTTGGCATATCTCTTCAGAC  600

seq1  TTCTGGAATCAAGGTTGGGGATGACAAGTGCTTCCTGGTTAACCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCAAGGTTGGGGATGACAAGTGCTTCCTGGTTAACCTGAATG  650

seq1  CTGACCCAGCTCTGAATGAACTCCTGGTGTACTACTTAAAGGTGAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCAGCTCTGAATGAACTCCTGGTGTACTACTTAAAGGTGAATGTC  700

seq1  CTGCCTTCACAGAGCTGGAGCACTCTGTGAGATGTGGAGAACTGTGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCACAGAGCTGGAGCACTCTGTGAGATGTGGAGAACTGTGGTCC  750

seq1  TTACCAATTGCTTTTAGTTCATCAATTGGAGTGAAGGGCAGTCTTGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATTGCTTTTAGTTCATCAATTGGAGTGAAGGGCAGTCTTGGGTT  800

seq1  TTGGAGATCAGTTATTGTTGCCTGTCTTTGAATGATGTCATTGAACTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATCAGTTATTGTTGCCTGTCTTTGAATGATGTCATTGAACTACT  850

seq1  TTTATAAAAAGAATATTCTGATATTATTTCTAGCAAGTTAAATAATGTAC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTATAAAAAGAATATTCTGATATTATTTCTAGCAAG-TAAATAATGTAC  899

seq1  CACCATTTTTTAACATAATTTATAGGAAGTACTTTCTTAAACATAAGTGG  950
      ||||| |||||||||||||||||||||||||||||||  |||||||||||
seq2  CACCA-TTTTTAACATAATTTATAGGAAGTACTTTCT--AACATAAGTGG  946

seq1  AAATAATTAAATTTCTTACTTAGCAACACTTGATAGGAGATTGGTATTTC  1000
      ||||||||||||||||||||||||||||||||||| |||||  |||||||
seq2  AAATAATTAAATTTCTTACTTAGCAACACTTGATA-GAGAT--GTATTTC  993

seq1  TAATATTTTTTAGGAAAAATTTAACAGTTAAAATATCAACCTATTAAAAA  1050
      | ||||||||||||||||  ||||||||| |||||||| | |||| ||||
seq2  T-ATATTTTTTAGGAAAA--TTAACAGTT-AAATATCACCTTATTGAAAA  1039

seq1  AAAACAAAAGGAGAGCAGATCACCTAGACAC  1081
      |||   ||||||   ||||||||||||||||
seq2  AAA--CAAAGGAAGCCAGATCACCTAGACAC  1068