BAC Information

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BAC

Clone NameB6Ng01-309K14
Chromosome14 (Build37)
Map Location 111,559,638 - 111,647,374
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309K14.bB6Ng01-309K14.g
ACCGA101847GA101848
length1,1101,151
definitionB6Ng01-309K14.b B6Ng01-309K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,646,255 - 111,647,374)(111,559,638 - 111,560,802)
sequence
gaattctcattttatagtactagactgtgaataggatgtgagttcatttc
ctttaaatttcaattacacaatactgtctttaaataaatatcatttatat
catcatttattacattgattaatcttgagagatatataaaaattaacata
cactaatatattaacataatcataaaactgtgttttgcgtacatatatta
cggtagtattgaagattgtcactacacctgtattaatactgcatcaaaaa
ccaagacacagttacatttctgcttttggtttgaaatatacatttttgat
tttagaatatttaaggcttttgggtatgtatattaacatgtgaatctaga
ttattgttagaccaacaagattttctaaatattcattgagctagaagttt
aatcttcagaaaatatatataaatgagaaatgtaataatttaggccgatg
tgaaatgaaactaatcagttgaaaaaatcacttagaatcatctaaattat
atacccattttaggattaaaacacctctaatgaacaaaccacagcacaga
gacttcatgtctgaaactgcatcaaaaaattgctccagccattagccatt
ttaatattctcttttatgcttgtagaaacatctaattaatatctgaatga
tgatataagaggtttattattgattttaccaaaaagaaacaaattaagaa
ttatgaaatattaaaaattcgacactatcttaaaatgtagacagtatctt
tatatgtaagaaataattggtatgaaaaataagttacagctgatatatat
tatatataagttcagtttcagagggtaagtattcaaatgcaagacaatgg
tcaaaaatcctaaaggacaaaaatgaatgtgacagaaatgccaagttgtt
atctgaaacagaaacagaattatttaaatttagagaatattatttttgtg
tgtgaaagtttattttgtttgtgttgttctgcatgtgtgttccatacatt
gcctgtggggtttttttttaatttttaataaatactcagattactataaa
tgagatgaaacataaaaaaggactatatgtactgataatatgggtatgtc
tctggtcaca

gaattcaagacccagaaataagcccacatacttagggacacttgattttt
gacaaagaaaccaaaaatatacaatggaaaaaataaagaatcttcaacaa
atggtgctggtcttactgattgtctttatgtagaaaaatggaaatagatc
catatttgtcaccttacacaaagcttgagtccagttggatcaaggactgc
agcttaaaaccagatacactgaatctaatagaagagaaagtgggaaagag
ccttgaactcattggcaaaggggtgggtggggatttcctaaacggaactc
caatctctccagctctaagaccaagaattgataaatgagacctcatgaaa
ctgaaaagcttctgtaaggtgaaggacatagtcaataggacaaatcggca
acctgcagataggaaaaatcttttaaaactacccttaatttaatatgaga
caaaataataaacccttctaaataatactgtgcttaacgagattctttct
ggaattgaaaagtatttatatacaaagattggatctaagaaataaaacac
aattgcatttgttaaaaattaatatatttttaatttttattcaaaagaaa
tagattctttaatgtgaaactaactgagagtggacagagcccctcagaca
gatgacaccaggttctcaatacaagtatcactgtaaatgtgcttcttaga
ataatcttttcttagggaaaagtgatgcaaaataattcaatagttaaacc
tcatctaagatgagaagaacttgaatgctttaaacttttattctgagact
gtctgtgtgccttcatcaagcatattcatgagatttaaaaaatatcatct
ctataagccaaatttccaggagaaagcaaactatacaatgaattgattta
cttacatgcaaagtgtcttttttagcttgcctcttcttttgcgttactaa
caacagaaaatctggagtatgtcatagatggccaccgagggttcatccca
tatcagcttcaacactgacaccattgcacacactagccagatttgctgaa
gaaccctggatatagctgtctcttgtgagctatgcggcctagcaaccaaa
gtggaatgctccagtcagctatggatggatccaggctccaaattggagga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111646255_111647374
seq2: B6Ng01-309K14.b_48_1157 (reverse)

seq1  TGTGAACAGAGACAATACCATATTATCAGTAACAATATTAGTCTTTTTTA  50
      ||||| ||||||||   ||||||||||||||   ||| ||||| ||||| 
seq2  TGTGACCAGAGACATACCCATATTATCAGTA--CATA-TAGTCCTTTTTT  47

seq1  TTGTTTTCATCTCCTTTTATTAGTAATTCTTGAAGTATTTA-TAAAAATT  99
       || ||||||||| |||   |||||| |||   |||||||| ||||||||
seq2  ATG-TTTCATCTCATTT--ATAGTAA-TCT--GAGTATTTATTAAAAATT  91

seq1  AAAAAAAA--CCCACAGGCAAATGTAATGGAAACACACATGCAAGAACAA  147
      ||||||||  ||||||||| ||||| |||| ||||||||||| |||||||
seq2  AAAAAAAAACCCCACAGGC-AATGT-ATGG-AACACACATGC-AGAACAA  137

seq1  CAACAAAACAAAATAAACTTTCACACAC-AAAATAATATTCTCTAAATTT  196
      ||   ||||||||||||||||||||||| |||||||||||||||||||||
seq2  CA--CAAACAAAATAAACTTTCACACACAAAAATAATATTCTCTAAATTT  185

seq1  AAATAATTCTGTTTCTGTTTCAGATAACAACTTGGCATTTCTGTCACATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTCTGTTTCTGTTTCAGATAACAACTTGGCATTTCTGTCACATT  235

seq1  CATTTTTGTCC-TTAGGATTTTTGACCATTGTCTTGCATTTGAATACTTA  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGTCCTTTAGGATTTTTGACCATTGTCTTGCATTTGAATACTTA  285

seq1  CCCTCTGAAACTGAACTTATATATAATATATATCAGCTGTAACTTATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAAACTGAACTTATATATAATATATATCAGCTGTAACTTATTTT  335

seq1  TCATACCAATTATTTCTTACATATAAAGATACTGTCTACATTTTAAGATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAATTATTTCTTACATATAAAGATACTGTCTACATTTTAAGATA  385

seq1  GTGTCGAATTTTTAATATTTCATAATTCTTAATTTGTTTCTTTTTGGTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGAATTTTTAATATTTCATAATTCTTAATTTGTTTCTTTTTGGTAA  435

seq1  AATCAATAATAAACCTCTTATATCATCATTCAGATATTAATTAGATGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAATAAACCTCTTATATCATCATTCAGATATTAATTAGATGTTT  485

seq1  CTACAAGCATAAAAGAGAATATTAAAATGGCTAATGGCTGGAGCAATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCATAAAAGAGAATATTAAAATGGCTAATGGCTGGAGCAATTTT  535

seq1  TTGATGCAGTTTCAGACATGAAGTCTCTGTGCTGTGGTTTGTTCATTAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAGTTTCAGACATGAAGTCTCTGTGCTGTGGTTTGTTCATTAGA  585

seq1  GGTGTTTTAATCCTAAAATGGGTATATAATTTAGATGATTCTAAGTGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTAATCCTAAAATGGGTATATAATTTAGATGATTCTAAGTGATT  635

seq1  TTTTCAACTGATTAGTTTCATTTCACATCGGCCTAAATTATTACATTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTGATTAGTTTCATTTCACATCGGCCTAAATTATTACATTTCT  685

seq1  CATTTATATATATTTTCTGAAGATTAAACTTCTAGCTCAATGAATATTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATATATTTTCTGAAGATTAAACTTCTAGCTCAATGAATATTTA  735

seq1  GAAAATCTTGTTGGTCTAACAATAATCTAGATTCACATGTTAATATACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTGTTGGTCTAACAATAATCTAGATTCACATGTTAATATACAT  785

seq1  ACCCAAAAGCCTTAAATATTCTAAAATCAAAAATGTATATTTCAAACCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAAGCCTTAAATATTCTAAAATCAAAAATGTATATTTCAAACCAA  835

seq1  AAGCAGAAATGTAACTGTGTCTTGGTTTTTGATGCAGTATTAATACAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAATGTAACTGTGTCTTGGTTTTTGATGCAGTATTAATACAGGT  885

seq1  GTAGTGACAATCTTCAATACTACCGTAATATATGTACGCAAAACACAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGACAATCTTCAATACTACCGTAATATATGTACGCAAAACACAGTT  935

seq1  TTATGATTATGTTAATATATTAGTGTATGTTAATTTTTATATATCTCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTATGTTAATATATTAGTGTATGTTAATTTTTATATATCTCTCA  985

seq1  AGATTAATCAATGTAATAAATGATGATATAAATGATATTTATTTAAAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATCAATGTAATAAATGATGATATAAATGATATTTATTTAAAGAC  1035

seq1  AGTATTGTGTAATTGAAATTTAAAGGAAATGAACTCACATCCTATTCACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTGTAATTGAAATTTAAAGGAAATGAACTCACATCCTATTCACA  1085

seq1  GTCTAGTACTATAAAATGAGAATTC  1120
      |||||||||||||||||||||||||
seq2  GTCTAGTACTATAAAATGAGAATTC  1110


seq1: chr14_111559638_111560802
seq2: B6Ng01-309K14.g_66_1216

seq1  GAATTCAAGACCCAGAAATAAGCCCACATACTTAGGGACACTTGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCCAGAAATAAGCCCACATACTTAGGGACACTTGATTTTT  50

seq1  GACAAAGAAACCAAAAATATACAATGGAAAAAATAAAGAATCTTCAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAACCAAAAATATACAATGGAAAAAATAAAGAATCTTCAACAA  100

seq1  ATGGTGCTGGTCTTACTGATTGTCTTTATGTAGAAAAATGGAAATAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTGGTCTTACTGATTGTCTTTATGTAGAAAAATGGAAATAGATC  150

seq1  CATATTTGTCACCTTACACAAAGCTTGAGTCCAGTTGGATCAAGGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTCACCTTACACAAAGCTTGAGTCCAGTTGGATCAAGGACTGC  200

seq1  AGCTTAAAACCAGATACACTGAATCTAATAGAAGAGAAAGTGGGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAACCAGATACACTGAATCTAATAGAAGAGAAAGTGGGAAAGAG  250

seq1  CCTTGAACTCATTGGCAAAGGGGTGGGTGGGGATTTCCTAAACGGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCATTGGCAAAGGGGTGGGTGGGGATTTCCTAAACGGAACTC  300

seq1  CAATCTCTCCAGCTCTAAGACCAAGAATTGATAAATGAGACCTCATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTCCAGCTCTAAGACCAAGAATTGATAAATGAGACCTCATGAAA  350

seq1  CTGAAAAGCTTCTGTAAGGTGAAGGACATAGTCAATAGGACAAATCGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGCTTCTGTAAGGTGAAGGACATAGTCAATAGGACAAATCGGCA  400

seq1  ACCTGCAGATAGGAAAAATCTTTTAAAACTACCCTTAATTTAATATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGATAGGAAAAATCTTTTAAAACTACCCTTAATTTAATATGAGA  450

seq1  CAAAATAATAAACCCTTCTAAATAATACTGTGCTTAACGAGATTCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATAAACCCTTCTAAATAATACTGTGCTTAACGAGATTCTTTCT  500

seq1  GGAATTGAAAAGTATTTATATACAAAGATTGGATCTAAGAAATAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAAAAGTATTTATATACAAAGATTGGATCTAAGAAATAAAACAC  550

seq1  AATTGCATTTGTTAAAAATTAATATATTTTTAATTTTTATTCAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTTGTTAAAAATTAATATATTTTTAATTTTTATTCAAAAGAAA  600

seq1  TAGATTCTTTAATGTGAAACTAACTGAGAGTGGACAGAGCCCCTCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTTTAATGTGAAACTAACTGAGAGTGGACAGAGCCCCTCAGACA  650

seq1  GATGACACCAGGTTCTCAATACAAGTATCACTGTAAATGTGCTTCTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACACCAGGTTCTCAATACAAGTATCACTGTAAATGTGCTTCTTAGA  700

seq1  ATAATCTTTTCTTAGGGAAAAGTGATGCAAAATAATTCAATAGTTAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTTCTTAGGGAAAAGTGATGCAAAATAATTCAATAGTTAAACC  750

seq1  TCATCTAAGATGAGAAGAACTTGAATGCTTTAAACTTTTATTCTGAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAGATGAGAAGAACTTGAATGCTTTAAACTTTTATTCTGAGACT  800

seq1  GTCTGTGTGCCTTCATCAAGCATATTCATGAGATTTAAAAAATATCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGCCTTCATCAAGCATATTCATGAGATTTAAAAAATATCATCT  850

seq1  CTATAAGCCAAATTTCCAGGAGAAAGCAAACTATACAATGAATTGATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCCAAATTTCCAGGAGAAAGCAAACTATACAATGAATTGATTTA  900

seq1  CTTACATGCAAAGTGTCTTTTTTAGCTTGCCTCTTCTTTTGCGTTACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGCAAAGTGTCTTTTTTAGCTTGCCTCTTCTTTTGCGTTACTAA  950

seq1  CAACAGAAAATCTGGAGGTATTGTCATAGATGGCCACCGAGGGTCCATCC  1000
      |||||||||||||||| ||| ||||||||||||||||||||||| |||||
seq2  CAACAGAAAATCTGGA-GTA-TGTCATAGATGGCCACCGAGGGTTCATCC  998

seq1  CATAATCAGCCTCCAAACACTGACACCATTGCACACACTAGCAAGATTTT  1050
      ||| |||||| ||  ||||||||||||||||||||||||||| ||| |||
seq2  CAT-ATCAGCTTC--AACACTGACACCATTGCACACACTAGCCAGA-TTT  1044

seq1  GCTGAAAGGACCCT-GATATAGCTGTCTCTTGTGAGGCTATGCCGGGCCT  1099
      |||| ||| ||||| |||||||||||||||||||| |||||||  |||||
seq2  GCTG-AAGAACCCTGGATATAGCTGTCTCTTGTGA-GCTATGC--GGCCT  1090

seq1  AGCAAACACAAAAGTGG-ATGCTCACAGTCAGCTATTGGATGGATCACAG  1148
      ||||   || ||||||| |||||| |||||||||| |||||||||| |||
seq2  AGCA---ACCAAAGTGGAATGCTC-CAGTCAGCTA-TGGATGGATC-CAG  1134

seq1  GGCCCCCAATGGAGGAG  1165
      |  ||  | ||||||||
seq2  GCTCCAAATTGGAGGAG  1151


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