BAC Information

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BAC

Clone NameB6Ng01-311D07
Chromosome14 (Build37)
Map Location 29,151,785 - 29,338,884
singlet/doubletdoublet
Overlap geneErc2, LOC100040206, Wnt5a, LOC100040218
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311D07.bB6Ng01-311D07.g
ACCGA102981GA102982
length1,1301,081
definitionB6Ng01-311D07.b B6Ng01-311D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,151,785 - 29,152,912)(29,337,809 - 29,338,884)
sequence
gaattctttcagagcccaattcaacctacttctcaatgatttgcccactg
aggccaattaggcaccatttaccagagcccagtgtagatctggaagtggg
tctggaagaatagaaactgcatccataattaagtcctagttcaagtccgt
ttgtttgctggcatgcatggggaaagttacacctcagaactatagaggaa
aaatgtagcatggtatagccatactgataatgatgataaatatgattcca
ttggaggggtgtttcccctacatcgatgtttcctagcactttacatagca
tgcaccttaccatgattgcatggcatttcccaacaaccaaaccgtcccga
caggtgaagaatggaggacagggccacagaatgcagtagttacctcccat
gaaagctgtcattccaccatgaattagctcaatgaatcccttagtctgat
gccctctcgagtgagttatttgtccagcactccagacttttggaccacgc
cacactccttttcattaccgtctgtcccacttgtactcataagccatttt
taagctgtagctcatatatctaagccagtgcttctgcagggagagggctg
tgcttgccatgtacactcattccagcttctgcatggccccaagccattgt
aaatgaaactagcttccacagtctaaccaagttccctgcagattcccaaa
aggagaggctgggttggcttgaagctggcaaggacttgggcccatatatc
tgttgcagtaaaacaatctcaggggtccctggtttgcagtgttgactaga
tgaatctaaccacgtcgaaggctgcttctttggagatggacttccccttt
gctttgaccagtctagctgtagaacctctcagactcagggttagcgtgga
tgatgatgtcttggttctgttgacatcccttgtctctcctgaactctcaa
gtgccactttacatacagaaagaacagcctgtacagtggagttataagga
gcttgaaatagagtccaggattcatctttacgtgtgctttggaacatgtt
ttcagagttgatttttttagttgaatttggttgtaaaacataagcattaa
cagccaaaggcctccctgttcttgctagca

gaattccacttttgttccaatacatatagagctctattgaggtttcccaa
cagtttgggtttggtttaaaaaaaaaaaaaaagtctgttcttctgttatt
tgaacacataactgccctaagctgtctcttgtggcttcaactaaaaatat
ttctctacatgaattagctgaaggacaactgaaacctcttaccaatatac
aagtaacattttattttatattctatcttccattggcataagcctttcaa
tgttcttttttttaaccagtgaaatatacaaatcacacaagacagaaata
tgtacattaaaagtacagaataaaggccataggggatatacaaaatatct
gaaggatgcgtagaatatcttacattaaataggttttttttaaagctagg
attgttaaactccactctgctcataaacatgaatcactaaaaacaaaaac
aaaaaaagaacataatctgatttaacaaataagagagagagagagagaga
gagagaacttcatggtttttgtagaataaaaaccaaaaagtgacatttta
aactaaattagtgctttttttcaacatcttttgcttgcaattcattgtag
ctgaggggaaatgaatattgttgggcaataagttaagagccacaggactg
aggtgaccagaaggctaccaagcccatgaatggatacacacatttttttt
caaaccttgtaagagtatcaggcctcgaaaacaacacagcagatgtcact
tttgaaacagaggtgcccttattttaaaacattgtttaaactagctatct
atgtggtgagctggtttgcttcgggaactcagatccgtcctgtcagacag
gacagtcccaagtcctccctgggaaaggagtgaagcaaacagacaggagg
ctggtgatcctgggttctgggagcctctcgaagttccagggctggcgaca
aaccacaagtgcccttccccacaaagaacaccaaagaggaggggtggaga
actggccatgggcagaagcagaaagcctactttcttagcaacatacattc
aggacatgagccttgaagcttccttccgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29151785_29152912
seq2: B6Ng01-311D07.b_44_1173

seq1  GAATTCTTTCAGAGCCCAATTCAACCTACTTCTCAATGATTTGCCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGAGCCCAATTCAACCTACTTCTCAATGATTTGCCCACTG  50

seq1  AGGCCAATTAGGCACCATTTACCAGAGCCCAGTGTAGATCTGGAAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAATTAGGCACCATTTACCAGAGCCCAGTGTAGATCTGGAAGTGGG  100

seq1  TCTGGAAGAATAGAAACTGCATCCATAATTAAGTCCTAGTTCAAGTCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGAATAGAAACTGCATCCATAATTAAGTCCTAGTTCAAGTCCGT  150

seq1  TTGTTTGCTGGCATGCATGGGGAAAGTTACACCTCAGAACTATAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGGCATGCATGGGGAAAGTTACACCTCAGAACTATAGAGGAA  200

seq1  AAATGTAGCATGGTATAGCCATACTGATAATGATGATAAATATGATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGCATGGTATAGCCATACTGATAATGATGATAAATATGATTCCA  250

seq1  TTGGAGGGGTGTTTCCCCTACATCGATGTTTCCTAGCACTTTACATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGGTGTTTCCCCTACATCGATGTTTCCTAGCACTTTACATAGCA  300

seq1  TGCACCTTACCATGATTGCATGGCATTTCCCAACAACCAAACCGTCCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTTACCATGATTGCATGGCATTTCCCAACAACCAAACCGTCCCGA  350

seq1  CAGGTGAAGAATGGAGGACAGGGCCACAGAATGCAGTAGTTACCTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAGAATGGAGGACAGGGCCACAGAATGCAGTAGTTACCTCCCAT  400

seq1  GAAAGCTGTCATTCCACCATGAATTAGCTCAATGAATCCCTTAGTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTCATTCCACCATGAATTAGCTCAATGAATCCCTTAGTCTGAT  450

seq1  GCCCTCTCGAGTGAGTTATTTGTCCAGCACTCCAGACTTTTGGACCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCGAGTGAGTTATTTGTCCAGCACTCCAGACTTTTGGACCACGC  500

seq1  CACACTCCTTTTCATTACCGTCTGTCCCACTTGTACTCATAAGCCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTTTTCATTACCGTCTGTCCCACTTGTACTCATAAGCCATTTT  550

seq1  TAAGCTGTAGCTCATATATCTAAGCCAGTGCTTCTGCAGGGAGAGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGTAGCTCATATATCTAAGCCAGTGCTTCTGCAGGGAGAGGGCTG  600

seq1  TGCTTGCCATGTACACTCATTCCAGCTTCTGCATGGCCCCAAGCCATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCATGTACACTCATTCCAGCTTCTGCATGGCCCCAAGCCATTGT  650

seq1  AAATGAAACTAGCTTCCACAGTCTAACCAAGTTCCCTGCAGATTCCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACTAGCTTCCACAGTCTAACCAAGTTCCCTGCAGATTCCCAAA  700

seq1  AGGAGAGGCTGGGTTGGCTTGAAGCTGGCAAGGACTTGGGCCCATATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCTGGGTTGGCTTGAAGCTGGCAAGGACTTGGGCCCATATATC  750

seq1  TGTTGCAGTAAAACAATCTCAGGGGTCCCTGGTTTGCAGTGTTGACTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAGTAAAACAATCTCAGGGGTCCCTGGTTTGCAGTGTTGACTAGA  800

seq1  TGAATCTAACCACGTCGAAGGCTGCTTCTTTGGAGATGGACTTCCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAACCACGTCGAAGGCTGCTTCTTTGGAGATGGACTTCCCCTTT  850

seq1  GCTTTGACCAGTCTAGCTGTAGAACCTCTCAGACTCAGGGTTAGCGTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACCAGTCTAGCTGTAGAACCTCTCAGACTCAGGGTTAGCGTGGA  900

seq1  TGATGATGTCTTGGTTTCTGTTGACAT-CCTTGTCTCTCCTGAACTCTCA  949
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TGATGATGTCTTGG-TTCTGTTGACATCCCTTGTCTCTCCTGAACTCTCA  949

seq1  GGTGCCACTTTACATACAGAAAGAACAGCCTGTACAGTGGAGTTATAAGG  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCACTTTACATACAGAAAGAACAGCCTGTACAGTGGAGTTATAAGG  999

seq1  AGCTTGAAATAGAGTTCCAGATTCATCTTTACGTGTGCTTT-GAACATGT  1048
      ||||||||||||||| |  |||||||||||||||||||||| ||||||||
seq2  AGCTTGAAATAGAGTCCAGGATTCATCTTTACGTGTGCTTTGGAACATGT  1049

seq1  TTTCCAGAGGTTGGTTTTTTTAATTTGTATTTGTTTGTAAAACATAAGCA  1098
      ||| |||| |||| ||||||| | ||| ||||| ||||||||||||||||
seq2  TTT-CAGA-GTTGATTTTTTT-AGTTGAATTTGGTTGTAAAACATAAGCA  1096

seq1  -TAACAG-CAAAAGCCCCCTTGT--CTGCTAGCA  1128
       |||||| |||| ||| || |||   ||||||||
seq2  TTAACAGCCAAAGGCCTCCCTGTTCTTGCTAGCA  1130


seq1: chr14_29337809_29338884
seq2: B6Ng01-311D07.g_69_1149 (reverse)

seq1  ACTCGG-AGGAAGCTCTCAGGGCTCATGTCCTGAATGTATGTTGGTTAGA  49
      |||||| |||||||| ||| |||||||||||||||||||||||| | |||
seq2  ACTCGGAAGGAAGCT-TCAAGGCTCATGTCCTGAATGTATGTTGCTAAGA  49

seq1  AAGTAGCCTTTCTGCTTCCTGCCCATGGCCAGTTCTCCACCC--TCTCTT  97
      |||||| |||||||||| ||||||||||||||||||||||||   |||||
seq2  AAGTAGGCTTTCTGCTT-CTGCCCATGGCCAGTTCTCCACCCCTCCTCTT  98

seq1  TGGTGTTCTTTGTGGGG-AGGGCAC-TGTGGTTTGTCG-CAGCCCTGG-A  143
      ||||||||||||||||| ||||||| |||||||||||| ||||||||| |
seq2  TGGTGTTCTTTGTGGGGAAGGGCACTTGTGGTTTGTCGCCAGCCCTGGAA  148

seq1  CTTCGAGAGGCTCCCAGAACCCAGGATCACCAGCCTCCTGTCTGTTTGCT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGAGGCTCCCAGAACCCAGGATCACCAGCCTCCTGTCTGTTTGCT  198

seq1  TCACTCCTTTCCCAGGGAGGACTTGGGACTGTCCTGTCTGACAGGACGGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTTCCCAGGGAGGACTTGGGACTGTCCTGTCTGACAGGACGGA  248

seq1  TCTGAGTTCCCGAAGCAAACCAGCTCACCACATAGATAGCTAGTTTAAAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCCCGAAGCAAACCAGCTCACCACATAGATAGCTAGTTTAAAC  298

seq1  AATGTTTTAAAATAAGGGCACCTCTGTTTCAAAAGTGACATCTGCTGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAAAATAAGGGCACCTCTGTTTCAAAAGTGACATCTGCTGTGT  348

seq1  TGTTTTCGAGGCCTGATACTCTTACAAGGTTTGAAAAAAAATGTGTGTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCGAGGCCTGATACTCTTACAAGGTTTGAAAAAAAATGTGTGTAT  398

seq1  CCATTCATGGGCTTGGTAGCCTTCTGGTCACCTCAGTCCTGTGGCTCTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGGGCTTGGTAGCCTTCTGGTCACCTCAGTCCTGTGGCTCTTA  448

seq1  ACTTATTGCCCAACAATATTCATTTCCCCTCAGCTACAATGAATTGCAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGCCCAACAATATTCATTTCCCCTCAGCTACAATGAATTGCAAG  498

seq1  CAAAAGATGTTGAAAAAAAGCACTAATTTAGTTTAAAATGTCACTTTTTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGTTGAAAAAAAGCACTAATTTAGTTTAAAATGTCACTTTTTG  548

seq1  GTTTTTATTCTACAAAAACCATGAAGTTCTCTCTCTCTCTCTCTCTCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTCTACAAAAACCATGAAGTTCTCTCTCTCTCTCTCTCTCTCT  598

seq1  CTTATTTGTTAAATCAGATTATGTTCTTTTTTTGTTTTTGTTTTTAGTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGTTAAATCAGATTATGTTCTTTTTTTGTTTTTGTTTTTAGTGA  648

seq1  TTCATGTTTATGAGCAGAGTGGAGTTTAACAATCCTAGCTTTAAAAAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTATGAGCAGAGTGGAGTTTAACAATCCTAGCTTTAAAAAAAA  698

seq1  CCTATTTAATGTAAGATATTCTACGCATCCTTCAGATATTTTGTATATCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAATGTAAGATATTCTACGCATCCTTCAGATATTTTGTATATCC  748

seq1  CCTATGGCCTTTATTCTGTACTTTTAATGTACATATTTCTGTCTTGTGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCCTTTATTCTGTACTTTTAATGTACATATTTCTGTCTTGTGTG  798

seq1  ATTTGTATATTTCACTGGTTAAAAAAAAGAACATTGAAAGGCTTATGCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATATTTCACTGGTTAAAAAAAAGAACATTGAAAGGCTTATGCCA  848

seq1  ATGGAAGATAGAATATAAAATAAAATGTTACTTGTATATTGGTAAGAGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGATAGAATATAAAATAAAATGTTACTTGTATATTGGTAAGAGGT  898

seq1  TTCAGTTGTCCTTCAGCTAATTCATGTAGAGAAATATTTTTAGTTGAAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTCCTTCAGCTAATTCATGTAGAGAAATATTTTTAGTTGAAGC  948

seq1  CACAAGAGACAGCTTAGGGCAGTTATGTGTTCAAATAACAGAAGAACAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGACAGCTTAGGGCAGTTATGTGTTCAAATAACAGAAGAACAGA  998

seq1  CTTTTTTTTTTTTTTTAAACCAAACCCAAACTGTTGGGAAACCTCAATAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTAAACCAAACCCAAACTGTTGGGAAACCTCAATAG  1048

seq1  AGCTCTATATGTATTGGAACAAAAGTGGAATTC  1076
      |||||||||||||||||||||||||||||||||
seq2  AGCTCTATATGTATTGGAACAAAAGTGGAATTC  1081


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