BAC Information

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BAC

Clone NameB6Ng01-312K20
Chromosome14 (Build37)
Map Location 21,461,254 - 21,591,219
singlet/doubletdoublet
Overlap geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g
Upstream geneEG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54
Downstream genePlau, EG620119, Vcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K20.bB6Ng01-312K20.g
ACCGA104087GA104088
length1,1071,084
definitionB6Ng01-312K20.b B6Ng01-312K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,461,254 - 21,462,360)(21,590,125 - 21,591,219)
sequence
gaattccaggacatgtctctaaaaattcattaattttagaaaataatttg
taatcgatattaatccatttcatttttaagacatggtttcactctgtcac
cctgacatgcctgaactcccagagatcgcctgcttctgcctccgaagtgc
taggaattaaagtcctgaaatgccacactcatccaagattggtgttttcc
cttactttttcagaaaccagtgtttaggggctgaagagagatctcagcgg
ttaagagtatttgtggagagtgtagctcttagacaggaccagggttcaac
taacagctccagctacggaggatctaatgcattctagcttctgcaggcac
tgcatgcgtgaggtgcacagacatgcaggcaaaacatccataggatgtaa
aaaataaaagtagataaaagttttaaaatacttattttgtacttattcca
catttcagtcaaccagaaatgtttaatgaactcagaaatcacatgcagct
tgctaataagtacaatattgtgcagcatagactttgtctccatagtatcg
aatgaatgagcactctccgagagccagagagtaatattctggctatgtga
tttgtaaaagagggacctttaaaattgctaactcaatggcagcaggggct
aggtgaataacaaaagctagtcttgtataatataaaaactagtgagtact
agaacccactagaatcacaaattcttacctgaaaggactctcttgagttg
acaaggtctcactatgtcgctctggctgtcctggaactcactctgtagat
caaagtggccttgaactcagagatccacctgcctctgtctctcaagtgct
gagactaaaggcatgcaccacccataccttcctactcctgaattttaaaa
cagagtaatgtatctggggcttaaattcaatccccaacactgcagtaaaa
taaagatagtaggatgggtgtagtggcagagtcccggagaatcactacaa
ggtctgtgctagcctgttccaccacaagccagccgtggtggcgcatgctc
taatcctagttactccggaaggcagagcacacggatttctgagtttgagc
cagtctg
gaattccagataataaggcagaaggattgccgtaagctctaggcaaacta
ggctacaaagcaatatactatctcaaaaataattaagggctaggcatagt
ggcatactgcccttttaatccccaaactggagaaggcagaggcaggcaga
tctcagtttgaggccagtctagtcttcatcacgagttctaggccagccag
ggctataatagtgggactctgtctcaaaaataaagtggggtggatctatg
gaagaacagaaaatgtgcctcagtgggtaatgtggctcagtaggtagtgt
ttgcctatatacatgaagtcctagatcatccagcaccacactaagtgtgg
tgacacatatctgtaattctagcatttgaaagatagaggcaggaggatca
caagtccagggttgtcctcagctacatattgagtttgagattgtatatac
aaaccctatctcaaagcaggtgctgtgttggttgcctgagtgtgtgtgcg
gcctgctccacatgcctttctgataggttctaccttttcccagaccctct
catcctcctgctcccacttgctcctctgaaagagctcctgtgctctccca
tcttgtctgctgtgccatgcgtcgtgtcttagctgcaccttctgtggggc
ctgcccttccagaggttcttgcttctccacctgactgattcattctctga
gccacgaagcttctatttcttcgtctcggtctgcagtggaaaccaagcac
tagtctcttgctgtgactgtgtacccgtggcccaaggggtactaggtaca
ttgccacttttctctaaaacatcttcagaagcaagccctgtgaggctgac
aagatgggggctggatggggttgctacagagaataggatttctgagttct
tttctgctaatctctgttcccatctcctctcttacagtgcgtctccatga
cagtatttctgagaaggtttcactacctcgtgttgacctgtaagtgcact
ttctgagggtatgggacctttctcctcagctgctgagatgacgcttggga
aaggctacgagccttcagcctctgtgaggctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21461254_21462360
seq2: B6Ng01-312K20.b_46_1152

seq1  GAATTCCAGGACATGTCTCTAAAAATTCATTAATTTTAGAAAATAATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATGTCTCTAAAAATTCATTAATTTTAGAAAATAATTTG  50

seq1  TAATCGATATTAATCCATTTCATTTTTAAGACATGGTTTCACTCTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGATATTAATCCATTTCATTTTTAAGACATGGTTTCACTCTGTCAC  100

seq1  CCTGACATGCCTGAACTCCCAGAGATCGCCTGCTTCTGCCTCCGAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATGCCTGAACTCCCAGAGATCGCCTGCTTCTGCCTCCGAAGTGC  150

seq1  TAGGAATTAAAGTCCTGAAATGCCACACTCATCCAAGATTGGTGTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTAAAGTCCTGAAATGCCACACTCATCCAAGATTGGTGTTTTCC  200

seq1  CTTACTTTTTCAGAAACCAGTGTTTAGGGGCTGAAGAGAGATCTCAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTTTCAGAAACCAGTGTTTAGGGGCTGAAGAGAGATCTCAGCGG  250

seq1  TTAAGAGTATTTGTGGAGAGTGTAGCTCTTAGACAGGACCAGGGTTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTATTTGTGGAGAGTGTAGCTCTTAGACAGGACCAGGGTTCAAC  300

seq1  TAACAGCTCCAGCTACGGAGGATCTAATGCATTCTAGCTTCTGCAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTCCAGCTACGGAGGATCTAATGCATTCTAGCTTCTGCAGGCAC  350

seq1  TGCATGCGTGAGGTGCACAGACATGCAGGCAAAACATCCATAGGATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGTGAGGTGCACAGACATGCAGGCAAAACATCCATAGGATGTAA  400

seq1  AAAATAAAAGTAGATAAAAGTTTTAAAATACTTATTTTGTACTTATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGTAGATAAAAGTTTTAAAATACTTATTTTGTACTTATTCCA  450

seq1  CATTTCAGTCAACCAGAAATGTTTAATGAACTCAGAAATCACATGCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGTCAACCAGAAATGTTTAATGAACTCAGAAATCACATGCAGCT  500

seq1  TGCTAATAAGTACAATATTGTGCAGCATAGACTTTGTCTCCATAGTATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAAGTACAATATTGTGCAGCATAGACTTTGTCTCCATAGTATCG  550

seq1  AATGAATGAGCACTCTCCGAGAGCCAGAGAGTAATATTCTGGCTATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAGCACTCTCCGAGAGCCAGAGAGTAATATTCTGGCTATGTGA  600

seq1  TTTGTAAAAGAGGGACCTTTAAAATTGCTAACTCAATGGCAGCAGGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAGAGGGACCTTTAAAATTGCTAACTCAATGGCAGCAGGGGCT  650

seq1  AGGTGAATAACAAAAGCTAGTCTTGTATAATATAAAAACTAGTGAGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATAACAAAAGCTAGTCTTGTATAATATAAAAACTAGTGAGTACT  700

seq1  AGAACCCACTAGAATCACAAATTCTTACCTGAAAGGACTCTCTTGAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACTAGAATCACAAATTCTTACCTGAAAGGACTCTCTTGAGTTG  750

seq1  ACAAGGTCTCACTATGTCGCTCTGGCTGTCCTGGAACTCACTCTGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCTCACTATGTCGCTCTGGCTGTCCTGGAACTCACTCTGTAGAT  800

seq1  CAAAGTGGCCTTGAACTCAGAGATCCACCTGCCTCTGTCTCTCAAGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCCTTGAACTCAGAGATCCACCTGCCTCTGTCTCTCAAGTGCT  850

seq1  GAGACTAAAGGCATGCACCACCCATACCTTCCTACTCCTGAATTTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAAGGCATGCACCACCCATACCTTCCTACTCCTGAATTTTAAAA  900

seq1  CAGAGTAATGTATCTGGGGCTTAAATTCAATCCCCAACACTGCAGTAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGAGTAATGTATCTGGGGCTTAAATTCAATCCCCAACACTGCAGT-AAA  949

seq1  ATAAAGATAGTAGGATGGGTGTAGTGGCAGAGT-CCGGAGAATCACTACA  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAAGATAGTAGGATGGGTGTAGTGGCAGAGTCCCGGAGAATCACTACA  999

seq1  AGGTCTGTGCTAGCCTGTTCCA-CACAAGCCAGGCGTGGTGGCGCATGCC  1048
      |||||||||||||||||||||| |||||||||| |||||||||||||| |
seq2  AGGTCTGTGCTAGCCTGTTCCACCACAAGCCAGCCGTGGTGGCGCATG-C  1048

seq1  TCTAATCCTAG-TACT-CGGAAGGCAGAGGCACACGGATTTCTGAGTTTG  1096
      ||||||||||| |||| ||||||||||| |||||||||||||||||||||
seq2  TCTAATCCTAGTTACTCCGGAAGGCAGA-GCACACGGATTTCTGAGTTTG  1097

seq1  AGGCCAGTCTG  1107
      | |||||||||
seq2  A-GCCAGTCTG  1107

seq1: chr14_21590125_21591219
seq2: B6Ng01-312K20.g_67_1150 (reverse)

seq1  AGGAGCCCTCACAGAGGCTGAAGGCCTCGGTTAGCCTTTCCCAAGCCTTC  50
      ||||| |||||||||||||||||| ||||  |||||||||||||| | ||
seq2  AGGAG-CCTCACAGAGGCTGAAGG-CTCG--TAGCCTTTCCCAAG-CGTC  45

seq1  ATCCTCAGCCAGCTGGAGAGAAAGGTCCCCATACCCTCAGAAAGTGGCAC  100
      || ||||| ||||||  ||||||||| |||||||||||||||||| ||||
seq2  AT-CTCAG-CAGCTGAGGAGAAAGGT-CCCATACCCTCAGAAAGT-GCAC  91

seq1  TTACAGGTCAAACACGAGGTAGTGAAACCCTTCTTCAGAAATACTGTCAT  150
      ||||||||| ||||||||||||||||| ||||| ||||||||||||||||
seq2  TTACAGGTC-AACACGAGGTAGTGAAA-CCTTC-TCAGAAATACTGTCAT  138

seq1  GGAGACGCACTGTAAGAGAGGAGATGGGAACAGAGATTAGCAGAAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGCACTGTAAGAGAGGAGATGGGAACAGAGATTAGCAGAAAAGAA  188

seq1  CTCAGAAATCCTATTCTCTGTAGCAACCCCATCCAG-CCCCATCTTGTCA  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCAGAAATCCTATTCTCTGTAGCAACCCCATCCAGCCCCCATCTTGTCA  238

seq1  GCCTCACAGGGCTTGCTTCTGAAGATGTTTTAGAGAAAAGTGGCAATGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACAGGGCTTGCTTCTGAAGATGTTTTAGAGAAAAGTGGCAATGTA  288

seq1  CCTAGTACCCCTTGGGCCACGGGTACACAGTCACAGCAAGAGACTAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTACCCCTTGGGCCACGGGTACACAGTCACAGCAAGAGACTAGTGC  338

seq1  TTGGTTTCCACTGCAGACCGAGACGAAGAAATAGAAGCTTCGTGGCTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCCACTGCAGACCGAGACGAAGAAATAGAAGCTTCGTGGCTCAG  388

seq1  AGAATGAATCAGTCAGGTGGAGAAGCAAGAACCTCTGGAAGGGCAGGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAATCAGTCAGGTGGAGAAGCAAGAACCTCTGGAAGGGCAGGCCC  438

seq1  CACAGAAGGTGCAGCTAAGACACGACGCATGGCACAGCAGACAAGATGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGGTGCAGCTAAGACACGACGCATGGCACAGCAGACAAGATGGG  488

seq1  AGAGCACAGGAGCTCTTTCAGAGGAGCAAGTGGGAGCAGGAGGATGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGGAGCTCTTTCAGAGGAGCAAGTGGGAGCAGGAGGATGAGAG  538

seq1  GGTCTGGGAAAAGGTAGAACCTATCAGAAAGGCATGTGGAGCAGGCCGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGAAAAGGTAGAACCTATCAGAAAGGCATGTGGAGCAGGCCGCA  588

seq1  CACACACTCAGGCAACCAACACAGCACCTGCTTTGAGATAGGGTTTGTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCAGGCAACCAACACAGCACCTGCTTTGAGATAGGGTTTGTAT  638

seq1  ATACAATCTCAAACTCAATATGTAGCTGAGGACAACCCTGGACTTGTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCTCAAACTCAATATGTAGCTGAGGACAACCCTGGACTTGTGAT  688

seq1  CCTCCTGCCTCTATCTTTCAAATGCTAGAATTACAGATATGTGTCACCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCTCTATCTTTCAAATGCTAGAATTACAGATATGTGTCACCAC  738

seq1  ACTTAGTGTGGTGCTGGATGATCTAGGACTTCATGTATATAGGCAAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGTGGTGCTGGATGATCTAGGACTTCATGTATATAGGCAAACAC  788

seq1  TACCTACTGAGCCACATTACCCACTGAGGCACATTTTCTGTTCTTCCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTGAGCCACATTACCCACTGAGGCACATTTTCTGTTCTTCCATA  838

seq1  GATCCACCCCACTTTATTTTTGAGACAGAGTCCCACTATTATAGCCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCCCACTTTATTTTTGAGACAGAGTCCCACTATTATAGCCCTGG  888

seq1  CTGGCCTAGAACTCGTGATGAAGACTAGACTGGCCTCAAACTGAGATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTAGAACTCGTGATGAAGACTAGACTGGCCTCAAACTGAGATCTG  938

seq1  CCTGCCTCTGCCTTCTCCAGTTTGGGGATTAAAAGGGCAGTATGCCACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTTCTCCAGTTTGGGGATTAAAAGGGCAGTATGCCACTA  988

seq1  TGCCTAGCCCTTAATTATTTTTGAGATAGTATATTGCTTTGTAGCCTAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCCCTTAATTATTTTTGAGATAGTATATTGCTTTGTAGCCTAGT  1038

seq1  TTGCCTAGAGCTTACGGCAATCCTTCTGCCTTATTATCTGGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAGAGCTTACGGCAATCCTTCTGCCTTATTATCTGGAATTC  1084