BAC Information

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BAC

Clone NameB6Ng01-314G20
Chromosome14 (Build37)
Map Location 24,166,394 - 24,167,475
singlet/doubletsinglet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G20.bB6Ng01-314G20.g
ACCGA105368GA105369
length7251,091
definitionB6Ng01-314G20.b B6Ng01-314G20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaatggcccagaagaactaaaagaaatgtttaatgcccttagtc
atctgggaaatgcaaaccaaaatgactctgagattccatcttacatatga
cagaatgtctaagatcaaaaactcaagtgacagcacattagcacattagt
attgaggatgtggaacactccttcattgcaggtaggattgtaaactttta
caaccactttggaaaacctatttggtggtttttcagaaaattgggaatag
ttccacctcaagatccaagtatgccactcctgggtatataaccaaaagat
gcttcaaccatcccacaaggacacttgctcaactatagtcatcgaggttt
tattcataatagccagaaaataaaacaagctagatgtccttcaaccaaag
aatgggtaaagaaaatggcacatctatacaatggaatgctcttcaattat
taaaaacaagatatcatgaagttttcatgcaaatatatgaaactaggata
tatcatcctgagtgaggtaatgcagacttagaaaaacacatataatatat
actcacttataagtggatattagccatatagtacaggataaccctgctac
aatccacagtcccaaagctaaggaacaagaagggccaaagggaggatgct
tgaatatcactcagaaggggaaataaaacagacatcagtggtagtgtgta
tggagggaggaaagtggatgggaga

gaattcagaagacagctatgtgaagcaactcagtgtgtgggcagaacacc
tctaaggctccccagaggaaaaggctgaaaagctgattggaaatggaagg
gaggagacaacaagtttgaagtgggtgggagtaggaccaagaatcaggac
aggccacttatccctgggaaatagccttggcttgcccttactgcagtagt
gtacatgaaatatggaggcttttcatggacttcttaaccaccaaagagca
tcccatgtcagacctctgctctgacagtggctcctataaaatagtggggg
gttgaacagcagcggcctgggaacctggaacctggaacctcctcggctct
cgtttcactccaagcctcctgactcttggagctgtggtctggccagtttc
ttctggaaacttcagcctctcagaatgaacttgtgaatcccacagagcaa
cagttgccacgtcagcaaagctccactcagcccagaaagactacacgcac
gcaaggctttaagactgccaccttctttccaactttggttaatttataat
tttaaaattgtctctaattacctgaatgaaatgtgctccctttaaaacat
ccaagagctcatataagtaaaatttgggaagacatggtgagcttacacat
tttctatgcatatttgtatgtgtgagtttatacgtttgtgtgcgtgcatg
tacacctatgtgtgcatacatatagaagccacagagcaacttctagctgc
ctcaggcactgtccattgttatttatttattcatttatttatttatttat
ttatttatttatttatagacagagtctcttgctggcctggactctccaag
aaggcttagctaagcccccggagatctgcccatccccagcactgatttta
taaaatgtgtgtcatcctgcccaagtgttttgcacaagtttctggggatt
cgaatcagctcctcttgtttcccaagtcaagcatctggcctgactgtgcc
atgatcctagccaaggatcctaactttcactgctcaaacatacaaaaata
ggacatattggttggtcttccatagataaaaaatactctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24166394_24167475
seq2: B6Ng01-314G20.g_65_1155 (reverse)

seq1  TAAGAAGTA-TTTTTATCTATGG-AGAC--AACAATATGTCCTA-TTTTG  45
      |||| |||| ||||||||||||| ||||  | |||||||||||| |||||
seq2  TAAG-AGTATTTTTTATCTATGGAAGACCAACCAATATGTCCTATTTTTG  49

seq1  TATGTTTGAGCAGTG-AAGTTAGGATCCTTGGCTAGGGCCATGGCACAGT  94
      ||||||||||||||| |||||||||||||||||||||  |||||||||||
seq2  TATGTTTGAGCAGTGAAAGTTAGGATCCTTGGCTAGGATCATGGCACAGT  99

seq1  CAGG-CAGATGCTTGACTTGGG-AACAAGAGGAGCTGATTCGAATCCCCA  142
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGCCAGATGCTTGACTTGGGAAACAAGAGGAGCTGATTCGAATCCCCA  149

seq1  G-AACTTGTGCAAAACACTTGGGCAGGATGACACACA-TTTATAAAATCA  190
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAACTTGTGCAAAACACTTGGGCAGGATGACACACATTTTATAAAATCA  199

seq1  GTGCTGGGGATGGGCAGATCTCCGGGGGCTTAGCTAAGCCTTCTTGGAGA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGATGGGCAGATCTCCGGGGGCTTAGCTAAGCCTTCTTGGAGA  249

seq1  GTCCAGGCCAGCAAGAGACTCTGTCTATAAATAAATAAATAAATAAATAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGCCAGCAAGAGACTCTGTCTATAAATAAATAAATAAATAAATAA  299

seq1  ATAAATAAATGAATAAATAAATAACAATGGACAGTGCCTGAGGCAGCTAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATGAATAAATAAATAACAATGGACAGTGCCTGAGGCAGCTAG  349

seq1  AAGTTGCTCTGTGGCTTCTATATGTATGCACACATAGGTGTACATGCACG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTCTGTGGCTTCTATATGTATGCACACATAGGTGTACATGCACG  399

seq1  CACACAAACGTATAAACTCACACATACAAATATGCATAGAAAATGTGTAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACGTATAAACTCACACATACAAATATGCATAGAAAATGTGTAA  449

seq1  GCTCACCATGTCTTCCCAAATTTTACTTATATGAGCTCTTGGATGTTTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCATGTCTTCCCAAATTTTACTTATATGAGCTCTTGGATGTTTTA  499

seq1  AAGGGAGCACATTTCATTCAGGTAATTAGAGACAATTTTAAAATTATAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCACATTTCATTCAGGTAATTAGAGACAATTTTAAAATTATAAA  549

seq1  TTAACCAAAGTTGGAAAGAAGGTGGCAGTCTTAAAGCCTTGCGTGCGTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAAGTTGGAAAGAAGGTGGCAGTCTTAAAGCCTTGCGTGCGTGT  599

seq1  AGTCTTTCTGGGCTGAGTGGAGCTTTGCTGACGTGGCAACTGTTGCTCTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTGGGCTGAGTGGAGCTTTGCTGACGTGGCAACTGTTGCTCTG  649

seq1  TGGGATTCACAAGTTCATTCTGAGAGGCTGAAGTTTCCAGAAGAAACTGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCACAAGTTCATTCTGAGAGGCTGAAGTTTCCAGAAGAAACTGG  699

seq1  CCAGACCACAGCTCCAAGAGTCAGGAGGCTTGGAGTGAAACGAGAGCCGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCACAGCTCCAAGAGTCAGGAGGCTTGGAGTGAAACGAGAGCCGA  749

seq1  GGAGGTTCCAGGTTCCAGGTTCCCAGGCCGCTGCTGTTCAACCCCCCACT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTCCAGGTTCCAGGTTCCCAGGCCGCTGCTGTTCAACCCCCCACT  799

seq1  ATTTTATAGGAGCCACTGTCAGAGCAGAGGTCTGACATGGGATGCTCTTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGGAGCCACTGTCAGAGCAGAGGTCTGACATGGGATGCTCTTT  849

seq1  GGTGGTTAAGAAGTCCATGAAAAGCCTCCATATTTCATGTACACTACTGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTAAGAAGTCCATGAAAAGCCTCCATATTTCATGTACACTACTGC  899

seq1  AGTAAGGGCAAGCCAAGGCTATTTCCCAGGGATAAGTGGCCTGTCCTGAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGCAAGCCAAGGCTATTTCCCAGGGATAAGTGGCCTGTCCTGAT  949

seq1  TCTTGGTCCTACTCCCACCCACTTCAAACTTGTTGTCTCCTCCCTTCCAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCCTACTCCCACCCACTTCAAACTTGTTGTCTCCTCCCTTCCAT  999

seq1  TTCCAATCAGCTTTTCAGCCTTTTCCTCTGGGGAGCCTTAGAGGTGTTCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATCAGCTTTTCAGCCTTTTCCTCTGGGGAGCCTTAGAGGTGTTCT  1049

seq1  GCCCACACACTGAGTTGCTTCACATAGCTGTCTTCTGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACACTGAGTTGCTTCACATAGCTGTCTTCTGAATTC  1091


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