BAC Information

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BAC

Clone NameB6Ng01-315F05
Chromosome14 (Build37)
Map Location 42,564,836 - 42,732,893
singlet/doubletdoublet
Overlap gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849
Downstream geneLOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315F05.bB6Ng01-315F05.g
ACCGA106006GA106007
length4451,109
definitionB6Ng01-315F05.b B6Ng01-315F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,732,443 - 42,732,893)(42,564,836 - 42,565,937)
sequence
agaacaatatactacccaatgaaaagcccagggacaagtttgggttatct
tgtttggggttgctcatcattgagtctcatacacactccccagtcattaa
agactgatgtcattgctcttccttcctttctggaagataatggtaagaac
acattgctgaagaagatggtatctcgcacaggcatcaattcaggcatcta
tctcattattttctgtgtggtgagaacatatttattactcttttgcagtt
acttggagatatttgaccattgcaacgcatcaaatttctatagacgtggt
aatcccttggtagctgagattgcaactccctgttccccatcaccctccca
acatctgtcttaagatctggcaactgttattttaatttcagcttctctaa
gtgggctaaactgaagagggagcccagggcctcatgcataccaag
gaattcacatgatccttgaggcctgtgtcatggagtagcttcagtgactg
gaagaatgggttagatttatttcctatactcaaagcaggcagaaaaggat
gaaagtcctccatgtaatatcaaatatatccagaagagggtgctagatcc
tcagtacccaaagtatccagaagatgggataagacagattgccatccagt
accaaagacatccagagagcatcttaagatcaaagtcagctggtgttgta
gccctagcagcaaggaggaggaggctgcatcctgatgccctctcctgaca
gtcagaatgaaattaaggaactcttgcagagcagctgcagcattgatatt
tcctgctctctgtcaaacaaactgcttcccagaagctccaagctcctgat
tcccattactggaagtccaagctcaagcccaccttctgtaggaagctccc
tctttcatgcccaggattcacagtgacttcccctgggccattaattcttg
ctctttaacactaagaccaatggccatcttgtggctgcctctttctggtc
tctgtatgttcattgttctctcctccaagaggcctgctcagttttgtcaa
catgtctaagggtgaaccataaaggtagttaatgatgctccaatagcagt
tggagtcaccacacattagtaacatcacagaaaatgccagggctctccag
gatacaacacaacatctagggaagggacttctgatgtcacacaggtcagc
tcttaccttcctgctcagtacctcacccaaatttacctaaagtcaaagtg
ccttttccagagtgtgggatagattgccttttggtactcagaatattaaa
agatgtctatcaatcacctttccaatgacaaatgtatccagaagagatcc
tttggatccccatgcaaatccacatgaaatacccagactccagaataaga
cactagacaatactcaacacatctagataaagtgtgatagatccccttgc
agtactgaaacttatccaagagagtaataacaacgttcagccaggttttc
tattgctgtgaacgactgacctggtacagaattgaaatgtcaccactaat
tgaccaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42732443_42732893
seq2: B6Ng01-315F05.b_47_497 (reverse)

seq1  CTTGGTATGCATGAGGCCCTGGGCTCCCTCTTCAGTTTAGCCCACTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTATGCATGAGGCCCTGGGCTCCCTCTTCAGTTTAGCCCACTTAGA  50

seq1  GAAGCTGAAATTAAAATAACAGTTGCCAGATCTTAAGACAGATGTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAAATTAAAATAACAGTTGCCAGATCTTAAGACAGATGTTGGGA  100

seq1  GGGTGATGGGGAACAGGGAGTTGCAATCTCAGCTACCAAGGGATTACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGGGGAACAGGGAGTTGCAATCTCAGCTACCAAGGGATTACCAC  150

seq1  GTCTATAGAAATTTGATGCGTTGCAATGGTCAAATATCTCCAAGTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAGAAATTTGATGCGTTGCAATGGTCAAATATCTCCAAGTAACTG  200

seq1  CAAAAGAGTAATAAATATGTTCTCACCACACAGAAAATAATGAGATAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGTAATAAATATGTTCTCACCACACAGAAAATAATGAGATAGAT  250

seq1  GCCTGAATTGATGCCTGTGCGAGATACCATCTTCTTCAGCAATGTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATTGATGCCTGTGCGAGATACCATCTTCTTCAGCAATGTGTTCT  300

seq1  TACCATTATCTTCCAGAAAGGAAGGAAGAGCAATGACATCAGTCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTATCTTCCAGAAAGGAAGGAAGAGCAATGACATCAGTCTTTAAT  350

seq1  GACTGGGGAGTGTGTATGAGACTCAATGATGAGCAACCCCAAACAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGAGTGTGTATGAGACTCAATGATGAGCAACCCCAAACAAGATA  400

seq1  ACCCAAACTTGTCCCTGGGCTTTTCATTGGGTAGTATATTGTTCTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTTGTCCCTGGGCTTTTCATTGGGTAGTATATTGTTCTGAATT  450

seq1  C  451
      |
seq2  C  451

seq1: chr14_42564836_42565937
seq2: B6Ng01-315F05.g_66_1174

seq1  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50

seq1  GAAGAATGGGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100

seq1  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150

seq1  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200

seq1  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250

seq1  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTCCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTCCTGACA  300

seq1  GTCAGAATGAAATTAAGGAACTCTTGCAGAGCAGCTGCAGCATTGATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAATTAAGGAACTCTTGCAGAGCAGCTGCAGCATTGATATT  350

seq1  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400

seq1  TCCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCCC  450

seq1  TCTTTCATGCCCAGGATTCACAGTGACTTCCCCTGGGCCATTAATTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGCCCAGGATTCACAGTGACTTCCCCTGGGCCATTAATTCTTG  500

seq1  CTCTTTAACACTAAGACCAATGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAACACTAAGACCAATGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550

seq1  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600

seq1  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGATGCTCCAATAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGATGCTCCAATAGCAGT  650

seq1  TGGAGTCACCACACATTAGTAACATCACAGAAAATGCCAGGGCTCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCACCACACATTAGTAACATCACAGAAAATGCCAGGGCTCTCCAG  700

seq1  GATACAACACAACATCTAGGGAAGGGACTTCTGATGTCACACAGGTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACACAACATCTAGGGAAGGGACTTCTGATGTCACACAGGTCAGC  750

seq1  TCTTACCTTCCTGCTCAGTACCTCACCCAAATTTACCTAAAGTCAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTTCCTGCTCAGTACCTCACCCAAATTTACCTAAAGTCAAAGTG  800

seq1  CCTTTTCCAGAGTGTGGGATAGATTGCCTTTTGGTACTCAGAATATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCAGAGTGTGGGATAGATTGCCTTTTGGTACTCAGAATATTAAA  850

seq1  AGATGTCTATCAATCACC-TTCCAATGACAAATGTATCCAGAAGAGATCC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGATGTCTATCAATCACCTTTCCAATGACAAATGTATCCAGAAGAGATCC  900

seq1  TTTGGATCCCCATGCAAATCCACATGAAATACCCAGACTCCAGAATAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCCCCATGCAAATCCACATGAAATACCCAGACTCCAGAATAAGA  950

seq1  CACTAGACAATACTCAACACATCTAGATAAAGTGTGATAGATCCCCTTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACAATACTCAACACATCTAGATAAAGTGTGATAGATCCCCTTGC  1000

seq1  AGTACTGAAAC-TATCCAGAAGAGGTTAATA--CACGTCCAGCCAG--TT  1044
      ||||||||||| |||||  |||||  |||||   |||| |||||||  ||
seq2  AGTACTGAAACTTATCC--AAGAGAGTAATAACAACGTTCAGCCAGGTTT  1048

seq1  TCTA-TGCTGTG-ACGACTGACCTGG-ACAGAATGGAAAATGTCACCACT  1091
      |||| ||||||| ||||||||||||| ||||||| | |||||||||||||
seq2  TCTATTGCTGTGAACGACTGACCTGGTACAGAATTG-AAATGTCACCACT  1097

seq1  AA-TGACCAAAG  1102
      || |||||||||
seq2  AATTGACCAAAG  1109