BAC Information

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BAC

Clone NameB6Ng01-315J22
Chromosome14 (Build37)
Map Location 102,434,506 - 102,559,339
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315J22.bB6Ng01-315J22.g
ACCGA106219GA106220
length1,119978
definitionB6Ng01-315J22.b B6Ng01-315J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,434,506 - 102,435,429)(102,558,355 - 102,559,339)
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgccactat
cacttagaataaaagccaagatgctcccatatacaggaatttacaatggt
ttaggaagtagatcaggctgtgattttagagtattgcattattcatgaga
tgtttagctagagcagaactccctaattagaaccatgacttgggtgtgaa
agcccttgccctaggagtgtaaagacctcacacctggcttctaagacgat
agctgaccttagatagggctgactttgtctcagttgttttattgcccagt
tcctgccagtctttgtgtttacattcctctgttttgtataagagtcatta
agcatccggtaacctcatttgtaccttgccaacgtgtcacctaacttccc
tattttcttctgtataaaaagtttgatgctcaatttgacaaattacattt
agattctacacaacctcttgtgttgggtctgtctgtcattcattcaccga
ctccttgcccatctgcaactagagatccattccacgcagacaaagggacc
caaagggtctgcggctacagggtttctctgtacagctctggctatcctgg
aactcactctgtagaccaggctgagaaactcagaaatctgcctgcctctg
cctcccgagtgctgggattaaaggcatgagccatcactgcccagccggta
ccttgtctctcaatactcctctttgcactcacatatacaaaatgcagtgg
ttgagtaatttgcaagacagtaaactgccaaatacaatgattacttatct
gtaacagcgatggaatctcggtgaatgggattcagctagaagagaaactt
gtttaggtactagatcttaactctgcaaggagactttctcattcattttt
ctgtttggctaatggcacctcttccttgtctattattttccatggcacac
ctaaagtgagtatgtttcgtcaacatatgttgtccatctttctggcactt
tcattttgcccaaaagaatgctcttcaatatttgagatgctacatcaaag
ccttctttttttttttttttaatgagagtatagttgctatagcttcttgg
ataatcaatttggttttat

gaattcttgcctctccaagttgcttttggttatgatgtttcatcacagca
attgtagccccaactaagatgtggccacttcacagttcctacaagatggt
cacaagtgacatatgcagcatcttcagctcttctttatctccacatcttt
aatatttctcagtgttgaagacatattaaattagtactttcatacagtct
tactattgcccttacttaaacctaaagtttggaccacgtttctgtggtgc
tcatgcagaaaatgatgatattacatttaaataacaagagtggggaaagg
actgcatttgacacctatacacttacttctcaatcagccatttttgattt
ttcatgataaccaaaaaaaaaaaatcataggtcagtaccaatttagatca
tgaaatttggatgatagaaggagagaagcaactcccacaagttgccctct
gacttgcaaaattgtaccatggtacatgtgcgcacacactaggaagtgat
gttactattatgtaggaacatttttgatcttctcacttgaactttatgtc
agagaaaataattcaaaataatgttttgctgttgttttgaaagaaggaag
ctcatgttaatacaacaacatgattaaaattagggaacaagcgacttatt
gagattgtggtggggaaaagtattatagaagtgatataaatgtttctaaa
ttgatatatgctgtacacgggaaagggagtttcacaacaatgtcatcctt
ttttttttattttaatcttgtattagccagtgttatcctcaagtaaagtg
tgtttcttctttcctgtacactgggaaatattgcagacacagcttctgat
gtcaatttaaatcagatttgtggagctgacccagatgctggtattaatct
ggtgaatctctaatgatagacagatatgaaagtcaagaatggacagagac
tcgccctttttaacatacattattgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102434506_102435429
seq2: B6Ng01-315J22.b_244_1164

seq1  AAAGCCCTTGCCCTAGGAGTGTAAAGACCTCACACCTGGCTTCTAAGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTGCCCTAGGAGTGTAAAGACCTCACACCTGGCTTCTAAGACG  50

seq1  ATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGACCTTAGATAGGGCTGACTTTGTCTCAGTTGTTTTATTGCCCA  100

seq1  GTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTATAAGAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCCAGTCTTTGTGTTTACATTCCTCTGTTTTGTATAAGAGTCAT  150

seq1  TAAGCATCCGGTAACCTCATTTGTACCTTGCCAACGTGTCACCTAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCCGGTAACCTCATTTGTACCTTGCCAACGTGTCACCTAACTTC  200

seq1  CCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAAATTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTCTTCTGTATAAAAAGTTTGATGCTCAATTTGACAAATTACAT  250

seq1  TTAGATTCTACACAACCTCTTGTGTTGGGTCTGTCTGTCATTCATTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCTACACAACCTCTTGTGTTGGGTCTGTCTGTCATTCATTCACC  300

seq1  GACTCCTTGCCCATCTGCAACTAGAGATCCATTCCACGCAGACAAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTGCCCATCTGCAACTAGAGATCCATTCCACGCAGACAAAGGGA  350

seq1  CCCAAAGGGTCTGCGGCTACAGGGTTTCTCTGTACAGCTCTGGCTATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGGTCTGCGGCTACAGGGTTTCTCTGTACAGCTCTGGCTATCCT  400

seq1  GGAACTCACTCTGTAGACCAGGCTGAGAAACTCAGAAATCTGCCTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCTGTAGACCAGGCTGAGAAACTCAGAAATCTGCCTGCCTC  450

seq1  TGCCTCCCGAGTGCTGGGATTAAAGGCATGAGCCATCACTGCCCAGCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCGAGTGCTGGGATTAAAGGCATGAGCCATCACTGCCCAGCCGG  500

seq1  TACCTTGTCTCTCAATACTCCTCTTTGCACTCACATATACAAAATGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTCTCTCAATACTCCTCTTTGCACTCACATATACAAAATGCAGT  550

seq1  GGTTGAGTAATTTGCAAGACAGTAAACTGCCAAATACAATGATTACTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGTAATTTGCAAGACAGTAAACTGCCAAATACAATGATTACTTAT  600

seq1  CTGTAACAGCGATGGAATCTCGGTGAATGGGATTCAGCTAGAAGAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAGCGATGGAATCTCGGTGAATGGGATTCAGCTAGAAGAGAAAC  650

seq1  TTGTTTAGGTACTAGATCTTAACTCTGCAAGGGAGACTTTCTCATTCATT  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTTTAGGTACTAGATCTTAACTCTGCAA-GGAGACTTTCTCATTCATT  699

seq1  TTTCTGTTTGGCTAATGGCACCTCTTCCTTGTCTATTATTTTCCATGGGC  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTGTTTGGCTAATGGCACCTCTTCCTTGTCTATTATTTTCCAT-GGC  748

seq1  ACACCTAAAGTGAGTATGTTTCGTCAACATATGTTGTCCATCTTTCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACCTAAAGTGAGTATGTTTCGTCAACATATGTTGTCCATCTTTCTGG-  797

seq1  CACTTTCATTTTGCCCAAAAGAAATGCTCTTCAAATATTTGAAGATGCTA  850
      ||||||||||||||||||||| |||||||||| |||||||| ||||||||
seq2  CACTTTCATTTTGCCCAAAAG-AATGCTCTTC-AATATTTG-AGATGCTA  844

seq1  CATCAAAGGC--CTCTTTTTTTTTTTTAAATGAGAGTATAGTTGCTATAG  898
      |||||||| |  || |||||||||||| ||||||||||||||||||||||
seq2  CATCAAAGCCTTCTTTTTTTTTTTTTTTAATGAGAGTATAGTTGCTATAG  894

seq1  CTTCTTGGATTAATCA--TTTGTTTTAT  924
      ||||||||| ||||||  || |||||||
seq2  CTTCTTGGA-TAATCAATTTGGTTTTAT  921


seq1: chr14_102558355_102559339
seq2: B6Ng01-315J22.g_65_1042 (reverse)

seq1  AAGCAAATAATGTATGTTAAAAAGGCTGAGTCTCTGCTCCATTCTTTGAC  50
      |||| ||||||||||||||||||||  ||||||||| ||||||| |||||
seq2  AAGC-AATAATGTATGTTAAAAAGGGCGAGTCTCTG-TCCATTC-TTGAC  47

seq1  TCTCATTATCTTGTCTAATCATTTAGAGATTCA-CAAATAAATACCAGCA  99
      | ||| |||| ||||| |||| ||||||||||| || || ||||||||||
seq2  TTTCA-TATC-TGTCT-ATCA-TTAGAGATTCACCAGATTAATACCAGCA  93

seq1  TCTGGGTTCAAGCTCCACAATTCTGA-TTAAATTGACATCAGAAGCTGTG  148
      |||||||   |||||||||| ||||| |||||||||||||||||||||||
seq2  TCTGGGT--CAGCTCCACAAATCTGATTTAAATTGACATCAGAAGCTGTG  141

seq1  TCTGCAATATTTCCCAGTGTACAGGAAAGAGGAAACACACTTTACTTGAG  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGCAATATTTCCCAGTGTACAGGAAAGAAGAAACACACTTTACTTGAG  191

seq1  GATAACACTGGCTAATACAAGATTAAAATAAAAAAAAAAGGATGACATTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACTGGCTAATACAAGATTAAAATAAAAAAAAAAGGATGACATTG  241

seq1  TTGTGAAACTCCCTTTCCCGTGTACAGCATATATCAATTTAGAAACATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAACTCCCTTTCCCGTGTACAGCATATATCAATTTAGAAACATTT  291

seq1  ATATCACTTCTATAATACTTTTCCCCACCACAATCTCAATAAGTCGCTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTTCTATAATACTTTTCCCCACCACAATCTCAATAAGTCGCTTG  341

seq1  TTCCCTAATTTTAATCATGTTGTTGTATTAACATGAGCTTCCTTCTTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATTTTAATCATGTTGTTGTATTAACATGAGCTTCCTTCTTTCA  391

seq1  AAACAACAGCAAAACATTATTTTGAATTATTTTCTCTGACATAAAGTTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGCAAAACATTATTTTGAATTATTTTCTCTGACATAAAGTTCA  441

seq1  AGTGAGAAGATCAAAAATGTTCCTACATAATAGTAACATCACTTCCTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGATCAAAAATGTTCCTACATAATAGTAACATCACTTCCTAGT  491

seq1  GTGTGCGCACATGTACCATGGTACAATTTTGCAAGTCAGAGGGCAACTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCACATGTACCATGGTACAATTTTGCAAGTCAGAGGGCAACTTG  541

seq1  TGGGAGTTGCTTCTCTCCTTCTATCATCCAAATTTCATGATCTAAATTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTGCTTCTCTCCTTCTATCATCCAAATTTCATGATCTAAATTGG  591

seq1  TACTGACCTATGATTTTTTTTTTTTGGTTATCATGAAAAATCAAAAATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCTATGATTTTTTTTTTTTGGTTATCATGAAAAATCAAAAATGG  641

seq1  CTGATTGAGAAGTAAGTGTATAGGTGTCAAATGCAGTCCTTTCCCCACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGAGAAGTAAGTGTATAGGTGTCAAATGCAGTCCTTTCCCCACTC  691

seq1  TTGTTATTTAAATGTAATATCATCATTTTCTGCATGAGCACCACAGAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTAAATGTAATATCATCATTTTCTGCATGAGCACCACAGAAAC  741

seq1  GTGGTCCAAACTTTAGGTTTAAGTAAGGGCAATAGTAAGACTGTATGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCAAACTTTAGGTTTAAGTAAGGGCAATAGTAAGACTGTATGAAA  791

seq1  GTACTAATTTAATATGTCTTCAACACTGAGAAATATTAAAGATGTGGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATTTAATATGTCTTCAACACTGAGAAATATTAAAGATGTGGAGA  841

seq1  TAAAGAAGAGCTGAAGATGCTGCATATGTCACTTGTGACCATCTTGTAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAGCTGAAGATGCTGCATATGTCACTTGTGACCATCTTGTAGG  891

seq1  AACTGTGAAGTGGCCACATCTTAGTTGGGGCTACAATTGCTGTGATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAAGTGGCCACATCTTAGTTGGGGCTACAATTGCTGTGATGAAA  941

seq1  CATCATAACCAAAAGCAACTTGGAGAGGCAAGAATTC  985
      |||||||||||||||||||||||||||||||||||||
seq2  CATCATAACCAAAAGCAACTTGGAGAGGCAAGAATTC  978


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